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VN1R1 Gene

protein-coding GIFtS: 53

GC19M062658

vomeronasal 1 receptor 1
(Previous names: vomeronasal olfactory receptor, (chromosome 19) subtype I, member 1 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: VNR19I1)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
V1RL1 ^¹, ², ³, ⁵
V3R-related ^²
VNR19I1 ^², ³
ZVNH1 ^¹, ²
ZVNR1 ^¹, ²
hGPCR24 ^³

Descriptions
V1R-like 1 ^²
V1r-like receptor 1 ^³
V3r-related gene protein ^³
Vomeronasal olfactory receptor chromosome 19 subtype I member 1 ^³
vomeronasal 1 receptor 1 ^²
vomeronasal olfactory receptor, (chromosome 19) subtype I, member 1 ^¹, ²

External Ids
HGNC: 13548¹
Entrez Gene: 57191²
UniProtKB: Q9GZP7³
Ensembl: ENSG00000178201⁷

Search outside databases for aliases for VN1R1 gene

Previous GC identifers: GC19M058408 GC19M062642

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for VN1R1:

Pheromones are chemical signals that elicit specific behavioral responses and physiologic

alterations in recipients of the same species. The protein encoded by this gene is similar to

pheromone receptors and is primarily localized to the olfactory mucosa. An alternate splice

variant of this gene is thought to exist, but its full length nature has not been determined.

[provided by RefSeq]

UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7

Function: Putative pheromone receptor

Gene Wiki entry for VN1R1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the VN1R1 gene

Entrez Gene cytogenetic band: 19q13.4 Ensembl cytogenetic band: 19q13.43 HGNC cytogenetic band: 19q13.4

VN1R1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19M062658: (about GC identifiers)

Start:	62,658,354 bp from pter
End:	62,659,666 bp from pter
Size:	1,313 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000019.8 NT_011109.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7 (See protein sequence)

Recommended Name: Vomeronasal type-1 receptor 1

Size: 353 amino acids; 40021 Da

Subcellular location: Cell membrane; Multi-pass membrane protein

Miscellaneous: The chimpanzee and orangutan orthologous proteins do not exist, their genes are

pseudogenes

Secondary accessions: Q7Z5H8 Q7Z5H9

REFSEQ proteins: NP_065684.1

ENSEMBL proteins:

ENSP00000322339

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
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	Browse R&D Systems for human recombinant proteins
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	Recombinant Proteins from Abcam (VN1R1)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

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Antibodies for VN1R1:

	Browse Antibodies Central at Invitrogen
	Millipore Mono- and Polyclonal Antibodies for the study of VN1R1
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	Antibodies from Abcam (VN1R1), each with their Abpromise^SM
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	Novus Biologicals Antibody for VN1R1

Assays for VN1R1:

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	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9GZP7

ProtoNet protein and cluster: Q9GZP7

UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7

Similarity: Belongs to the G-protein coupled receptor 1 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VN1R1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (VN1R1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020633

Applied Biosystems Silencer® siRNAs for VN1R1

Sigma-Aldrich siRNA and siRNA Panels for VN1R1

Sigma-Aldrich shRNA Panels and shRNA for VN1R1

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Clones:		Invitrogen Clones for VN1R1
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_020633
Myc/DDK tagged cDNA clone in CMV expression vector: NM_020633
untagged cDNA clone in CMV expression vector: NM_020633

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_020633

UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7

Function: Putative pheromone receptor

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	IEA	--
GO:0016503	pheromone receptor activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for VN1R1

2 Interacting proteins for VN1R1 (ENSP00000322339³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ZNF419	ENSP00000221735³	STRING (score=.738)
ZNF749	ENSP00000333980³	STRING (score=.738)

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4 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007165	signal transduction	IEA	--
GO:0007186	G-protein coupled receptor protein signaling pathway	IEA	--
GO:0008150	biological_process	ND	--
GO:0019236	response to pheromone	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for VN1R1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VN1R1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (VN1R1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020633

Sigma-Aldrich siRNA and siRNA Panels for VN1R1

Sigma-Aldrich shRNA Panels and shRNA for VN1R1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_020633

REFSEQ mRNAs for VN1R1 gene:

NM_020633.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_020633

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020633
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_020633
                                 untagged cDNA clone in CMV expression vector: NM_020633

Additional cDNA sequence:

AF255342.1 AF302903.1 AK094452.1 BC095508.1

1 DOTS entry:

DT.91742876

24/74 AceView cDNA sequences (see all 74 ):

AI985650 BU931511 AF255342 NM_020633 AA505364 CD630261 BM664629 AI801007

AF302903 CD630263 CR594998 CD630267 BX110882 AA936324 BP872194 AA334110

AK094452 BM677325 CR749225 BE266185 BM979074 BX442402 AA932935 W94574

highest scoring ESTs for VN1R1:

AF255342 AF302903 AK094452 CF147790 BG167434 BC095508 CD237294 CD630256 CD630257 CD630258

Unigene Cluster for VN1R1:

Vomeronasal 1 receptor 1

Hs.677423 [show with all ESTs]

Unigene Representative Sequence: AK094452

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000321039

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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VN1R1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for VN1R1

¹ / ² / ³

2 probe-sets matching VN1R1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
221412_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_020633	0.60	1.00	0.82	1
221412_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GATACTGTTA

SOURCE GeneReport for Unigene cluster: Hs.677423
UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7
Tissue specificity: Expressed in the olfactory mucosa, very low expression in brain, lung and
kidney

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for VN1R1 gene from 3 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
cow (Bos taurus)	VN1R1¹	--	vomeronasal 1 receptor 1	75.66(n) 63.16(a)	790265 XM_001256784.1 XP_001256785.1
rat (Rattus norvegicus)	V1rm6¹	--	vomeronasal 1 receptor, M6	62.58(n) 45.7(a)	494278 NM_001008930.1 NP_001008930.1
mouse (Mus musculus)	V1rl1⁵	7	vomeronasal 1 receptor, L1	--	BC148761

About this table Species with no ortholog for VN1R1

ENSEMBL Gene Tree for VN1R1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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Pseudogenes

3 related pseudogenes

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/23 NCBI SNPs in VN1R1 are shown (see all 23 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 17)

AB	SNP ID	Valid	Chr 19 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs7247474^1,2	A,C,F,H	62658274(+)	`AAGCAC/ACTGAA`	1	--	ng5¹		14		EU EA WA NA	1438
	rs3746223^1,2	C,F,H	62659358(-)	`GGGATA/GCCTCA`	1	I/M	mis¹ ese³		9		EA EU WA	2318
--	rs8109760^1,2	A,C	62660362(+)	`gccctC/Tcagcc`	1	--	ng3¹		0	--	--	--	--
--	rs8101158^1,2	A,C	62657892(+)	`cccacA/Ctcagc`	1	--	ng5¹		0	--	--	--	--
--	rs8113486^1,2	--	62661216(+)	`ccgccA/Cgcctc`	1	--	ng3¹		0	--	--	--	--
--	rs73936946^1,2	--	62659983(+)	`ACTGCG/TTGTGA`	1	--	ng3¹		0	--	--	--	--
--	rs73065251^1,2	--	62661418(+)	`GCTCAC/TGCCTG`	1	--	ng3¹		0	--	--	--	--
--	rs72053389^1,2	--	62661125(+)	`TGTGT-/TGTG TGTGTGGTGTG`	1	--	ng3¹		0	--	--	--	--
--	rs67150776^1,2	--	62661167(+)	`GGGTTG/TCACCG`	1	--	ng3¹		0	--	--	--	--
--	rs67265221^1,2	--	62660404(+)	`AAAAA-/AAAAAA`	1	--	ng3¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for VN1R1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605234

Human Genome Epidemiology Navigator: VN1R1 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10 PubMed articles for VN1R1 gene:

A putative pheromone receptor gene expressed in human olfactory mucosa. (PubMed id 10973240)^{2, 3, 4} Rodriguez I.... Mombaerts P. (2000)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. (PubMed id 12826614)^{3, 4} Zhang J. and Webb D.M. (2003)
Identification of G protein-coupled receptor genes from the human genome sequence. (PubMed id 12044878)^{3, 4} Takeda S.... Mitaku S. (2002)
Association study of human VN1R1 pheromone receptor gene alleles and gender. (PubMed id 17627382)³ Mitropoulos C....Patrinos G.P. (2007)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
A novel family of candidate pheromone receptors in mammals. (PubMed id 11163270)³ Pantages E. and Dulac C. (2000)
Characterization of nonfunctional V1R-like pheromone receptor sequences in human. (PubMed id 11116092)³ Giorgi D....Rouquier S. (2000)
Identification of V1R-like putative pheromone receptor sequences in non-human primates. Characterization of V1R pseudogenes in marmoset, a primate species that possesses an intact vomeronasal organ. (PubMed id 12142329)¹ Giorgi D. and Rouquier S. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 57191	HGNC: 13548	AceView: VN1R1	Ensembl:ENSG00000178201	euGenes: HUgn57191
ECgene: VN1R1	H-InvDB: VN1R1

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
Protein Spotlight	http://www.expasy.org/spotlight/back_issues/sptlt061.shtml

Licensable Technologies for VN1R1
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for VN1R1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
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Invitrogen Clones	Invitrogen Q-PCR Products
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VN1R1 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for VN1R1

Summaries
for VN1R1

Genomic Location
for VN1R1

Proteins
for VN1R1

Protein Domains/
Families
for VN1R1

Gene Function
for VN1R1

Pathways & Interactions
for VN1R1

Drugs & Compounds
for VN1R1

Transcripts
for VN1R1

Expression
for VN1R1

Orthologs
for VN1R1

Paralogs
for VN1R1

SNPs/Variants
for VN1R1

Disorders & Mutations
for VN1R1

Medical News
for VN1R1

Publications
for VN1R1

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Genome Databases showing VN1R1

Other Databases showing VN1R1

Specialized Databases showing VN1R1

Licensable Technologies
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Services
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

VN1R1 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor VN1R1

Summariesfor VN1R1

Genomic Locationfor VN1R1

Proteinsfor VN1R1

Protein Domains/Familiesfor VN1R1

Gene Functionfor VN1R1

Pathways & Interactionsfor VN1R1

Drugs & Compoundsfor VN1R1

Transcriptsfor VN1R1

Expression for VN1R1

Orthologsfor VN1R1

Paralogsfor VN1R1

SNPs/Variantsfor VN1R1

Disorders & Mutationsfor VN1R1

Medical Newsfor VN1R1

Publicationsfor VN1R1

Search for VN1R1

Genome Databases showing VN1R1

Other Databases showing VN1R1

Specialized Databases showing VN1R1

Licensable Technologiesfor VN1R1

Servicesfor VN1R1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for VN1R1

Summaries
for VN1R1

Genomic Location
for VN1R1

Proteins
for VN1R1

Protein Domains/
Families
for VN1R1

Gene Function
for VN1R1

Pathways & Interactions
for VN1R1

Drugs & Compounds
for VN1R1

Transcripts
for VN1R1

Expression
for VN1R1

Orthologs
for VN1R1

Paralogs
for VN1R1

SNPs/Variants
for VN1R1

Disorders & Mutations
for VN1R1

Medical News
for VN1R1

Publications
for VN1R1

Licensable Technologies
for VN1R1

Services
for VN1R1