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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

VN1R1 Gene

protein-coding   GIFtS: 48
GCID: GC19M057966

vomeronasal 1 receptor 1

(Previous names: vomeronasal olfactory receptor, (chromosome 19) subtype...)
(Previous symbol: VNR19I1)
  Search for VN1R1
in our new
 Human Malady Compendium 
Biological research products
for VN1R1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Vomeronasal 1 Receptor 11 2     G-Protein Coupled Receptor GPCR242 3
V1RL11 2 3 5     HGPCR241
VNR19I11 2 3     V1r-Like Receptor 12 3
ZVNH11 2     V3r-Related Gene Protein2 3
ZVNR11 2     V1R-Like 12
Vomeronasal Olfactory Receptor, (Chromosome 19) Subtype I, Member 11 2     Vomeronasal Type-1 Receptor 12
Vomeronasal Olfactory Receptor Chromosome 19 Subtype I Member 12 3     

External Ids:    HGNC: 135481   Entrez Gene: 571912   Ensembl: ENSG000001782017   OMIM: 6052345   UniProtKB: Q9GZP73   

Export aliases for VN1R1 gene to outside databases

Previous GC identifers: GC19M058408 GC19M062642 GC19M062658 GC19M054279


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for VN1R1:
Pheromones are chemical signals that elicit specific behavioral responses and physiologic alterations in recipients of
the same species. The protein encoded by this gene is similar to pheromone receptors and is primarily localized to the
olfactory mucosa. An alternate splice variant of this gene is thought to exist, but its full length nature has not
been determined. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7
Function: Putative pheromone receptor

Gene Wiki entry for VN1R1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the VN1R1 gene promoter:
         COUP-TF1   FAC1   COUP-TF   HTF   COUP   HNF-4alpha2   XBP-1   HNF-4alpha1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidVN1R1 promoter sequence
   Search SABiosciences Chromatin IP Primers for VN1R1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VN1R1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.4   Ensembl cytogenetic band:  19q13.43   HGNC cytogenetic band: 19q13.4

VN1R1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
VN1R1 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M057966:  view genomic region     (about GC identifiers)

Start:
57,966,542 bp from pter      End:
57,967,854 bp from pter
Size:
1,313 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7 (See protein sequence)
Recommended Name: Vomeronasal type-1 receptor 1  
Size: 353 amino acids; 40021 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Miscellaneous: The chimpanzee and orangutan orthologous proteins do not exist, their genes are pseudogenes
Secondary accessions: B3KSV5 Q7Z5H8 Q7Z5H9

Explore the universe of human proteins at neXtProt for VN1R1: NX_Q9GZP7

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9GZP7

  • VN1R1 Protein expression data from MOPED and PaxDb:    About this image 
    VN1R1 Protein Expression
    REFSEQ proteins: NP_065684.1  
    ENSEMBL proteins: 
     ENSP00000322339  

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    Uscn Proteins for VN1R1

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane IEA--
    GO:0016020membrane NAS--
    GO:0016021integral to membrane IEA--

    VN1R1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    VN1R1 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR004072 Vmron_rcpt_1

    Graphical View of Domain Structure for InterPro Entry Q9GZP7

    ProtoNet protein and cluster: Q9GZP7

    UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7
    Similarity: Belongs to the G-protein coupled receptor 1 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: VN1R1_HUMAN, Q9GZP7
    Function: Putative pheromone receptor

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016503pheromone receptor activity IEA--
         
    VN1R1 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for VN1R1:
     Increased gamma-H2AX phosphory 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1GPCRs, Other
    GPCRs, Other1.00


    1 BioSystems Pathway for VN1R1 
        GPCRs, Other


    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for VN1R1

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--
    GO:0019236response to pheromone IEA--

    VN1R1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for VN1R1
    Search CenterWatch for drugs/clinical trials and news about VN1R1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for VN1R1 gene: 
    NM_020633.3  

    Unigene Cluster for VN1R1:

    Vomeronasal 1 receptor 1
    Hs.677423  [show with all ESTs]
    Unigene Representative Sequence: AK094452
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000321039(uc002qos.2)

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    Inhib. RNA
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    Additional cDNA sequence: 

    AF255342.1 AF302903.1 AK094452.1 BC095508.1 

    1 DOTS entry:

    DT.91742876 

    24/74 AceView cDNA sequences (see all 74):

    AI801007 CD630261 CD630263 CR594998 AF255342 BU931511 BX110882 AF302903 
    NM_020633 BM664629 AA505364 CD630267 AA936324 AI985650 BP871816 BQ709844 
    BG717450 BG167434 AA334110 CD105575 CA393613 CD642604 BX442402 BM721740 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    VN1R1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GATACTGTTA
    VN1R1 Expression
    About this image
    See VN1R1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for VN1R1

    SOURCE GeneReport for Unigene cluster: Hs.677423

    UniProtKB/Swiss-Prot: VN1R1_HUMAN, Q9GZP7
    Tissue specificity: Expressed in the olfactory mucosa, very low expression in brain, lung and kidney

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VN1R1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for VN1R1 gene from 1/5 species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Vmn1r705 vomeronasal 1 receptor 70   --   7 (6.55 cM) 10633587 


    ENSEMBL Gene Tree for VN1R1 (if available)
    TreeFam Gene Tree for VN1R1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for VN1R1 gene
    VN1R22  VN1R42  
    3 SIMAP similar genes for VN1R1 using alignment to 1 protein entry:     VN1R1_HUMAN:
    VN1R3    VN1R2    VN1R4

    VN1R1 for paralogs           About GeneDecksing


    5/16 Pseudogenes.org Pseudogenes for VN1R1 (see all 16)
    PGOHUM00000238575 PGOHUM00000234317 PGOHUM00000234427 PGOHUM00000234784 PGOHUM00000259433


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/89 NCBI SNPs in VN1R1 are shown (see all 89    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs81011581,2
    C,A,H--57966080(+) CCCACA/CTCAGC 1 -- ds50011Minor allele frequency- C:0.00NA 2
    rs1841977801,2
    --57966103(+) TGGGGA/TTACCG 1 -- ds50010--------
    rs1408756091,2
    --57966110(+) ACCGGC/TGTGAC 1 -- ds50010--------
    rs1498315671,2
    --57966120(+) CCCACA/GGTGCC 1 -- ds50010--------
    rs1457445181,2
    --57966195(+) ATTCTC/TGTGCT 1 -- ds50010--------
    rs1895089881,2
    --57966316(+) CTCAAC/GTCATC 1 -- ds50010--------
    rs72474741,2
    C,F,A,H--57966462(+) AAGCAC/ACTGAA 1 -- ds500134Minor allele frequency- A:0.20NS EA NA WA CSA 3379
    rs1818482411,2
    --57966494(+) TTTTTA/CAAACA 1 -- ds50010--------
    rs769970171,2
    C--57966578(+) TGATTT/CCCTGA 1 -- ut312Minor allele frequency- C:0.10CSA WA 120
    rs1860939771,2
    --57966586(+) TGAACC/TTGTCT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for VN1R1 (57966542 - 57967854 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for VN1R1: --

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for VN1R1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    VN1R1 for disorders           About MalaCards

    VN1R1 for disorders           About GeneDecksing

    OMIM gene information: 605234    OMIM disorders: --

    Human Genome Epidemiology (HuGE) Navigator: VN1R1 (2 documents)

    Export disorders for VN1R1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for VN1R1 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with VN1R1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A putative pheromone receptor gene expressed in human olfactory mucosa. (PubMed id 10973240)1, 2, 3 Rodriguez I.... Mombaerts P. (2000)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. (PubMed id 12826614)1, 2 Zhang J. and Webb D.M. (2003)
    5. Identification of G protein-coupled receptor genes from the human genome sequence. (PubMed id 12044878)1, 2 Takeda S.... Mitaku S. (2002)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. Extreme variability among mammalian V1R gene families . (PubMed id 19952141)1 Young J.M....Trask B.J. (2010)
    8. Association study of human VN1R1 pheromone receptor gene alleles and gender. (PubMed id 17627382)1 Mitropoulos C....Patrinos G.P. (2007)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    10. A novel family of candidate pheromone receptors in mammals. (PubMed id 11163270)1 Pantages E. and Dulac C. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57191 HGNC: 13548 AceView: VN1R1 Ensembl:ENSG00000178201 euGenes: HUgn57191
    ECgene: VN1R1 H-InvDB: VN1R1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for VN1R1 Pharmacogenomics, SNPs, Pathways
    Protein Spotlighthttp://web.expasy.org/spotlight/back_issues/sptlt061.shtml

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for VN1R1 gene:
    Search GeneIP for patents involving VN1R1

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
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     Regulatory tfbs in VN1R1 promoter
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     VN1R1 Proteins, Antibodies, CLIAs, and ELISAs
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    Sirion Biotech Customized:
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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    VWF
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    von Willebrand factor
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