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Aliases for VMP1 Gene

Aliases for VMP1 Gene

  • Vacuole Membrane Protein 1 2 3
  • Transmembrane Protein 49 2 3 4
  • TMEM49 3 4 6
  • EPG3 3 6
  • Ectopic P-Granules Autophagy Protein 3 Homolog (C. Elegans) 2
  • Transport And Golgi Organization 5 Homolog (Drosophila) 2
  • Ectopic P-Granules Autophagy Protein 3 Homolog 3
  • Transport And Golgi Organization 5 Homolog 3
  • TANGO5 3
  • TDC1 4

External Ids for VMP1 Gene

Previous HGNC Symbols for VMP1 Gene

  • TMEM49

Previous GeneCards Identifiers for VMP1 Gene

  • GC17P057536
  • GC17P060234
  • GC17P058126
  • GC17P058259
  • GC17P055139
  • GC17P057785

Summaries for VMP1 Gene

GeneCards Summary for VMP1 Gene

VMP1 (Vacuole Membrane Protein 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for VMP1 Gene

  • Stress-induced protein that, when overexpressed, promotes formation of intracellular vacuoles followed by cell death. May be involved in the cytoplasmic vacuolization of acinar cells during the early stage of acute pancreatitis. Plays a role in the initial stages of the autophagic process through its interaction with BECN1 (By similarity). Involved in cell-cell adhesion. Plays an essential role in formation of cell junctions.

Gene Wiki entry for VMP1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VMP1 Gene

Genomics for VMP1 Gene

Genomic Location for VMP1 Gene

Start:
59,707,192 bp from pter
End:
59,842,255 bp from pter
Size:
135,064 bases
Orientation:
Plus strand

Genomic View for VMP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VMP1 Gene

No data available for Regulatory Elements for VMP1 Gene

Proteins for VMP1 Gene

  • Protein details for VMP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GC9-VMP1_HUMAN
    Recommended name:
    Vacuole membrane protein 1
    Protein Accession:
    Q96GC9
    Secondary Accessions:
    • B4DVV9
    • Q9H0P4
    • Q9P089

    Protein attributes for VMP1 Gene

    Size:
    406 amino acids
    Molecular mass:
    46238 Da
    Quaternary structure:
    • Interacts with BECN1. Interacts with TJP1. Interacts with TP53INP2.

    Alternative splice isoforms for VMP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for VMP1 Gene

Proteomics data for VMP1 Gene at MOPED

Post-translational modifications for VMP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for VMP1 Gene

Domains for VMP1 Gene

Protein Domains for VMP1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q96GC9

UniProtKB/Swiss-Prot:

VMP1_HUMAN :
  • Q96GC9
Family:
  • Belongs to the VMP1 family.
genes like me logo Genes that share domains with VMP1: view

No data available for Gene Families for VMP1 Gene

Function for VMP1 Gene

Molecular function for VMP1 Gene

UniProtKB/Swiss-Prot Function: Stress-induced protein that, when overexpressed, promotes formation of intracellular vacuoles followed by cell death. May be involved in the cytoplasmic vacuolization of acinar cells during the early stage of acute pancreatitis. Plays a role in the initial stages of the autophagic process through its interaction with BECN1 (By similarity). Involved in cell-cell adhesion. Plays an essential role in formation of cell junctions.

Gene Ontology (GO) - Molecular Function for VMP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17724469
genes like me logo Genes that share ontologies with VMP1: view
genes like me logo Genes that share phenotypes with VMP1: view

Animal Model Products

CRISPR Products

miRNA for VMP1 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for VMP1 Gene

Localization for VMP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VMP1 Gene

Endoplasmic reticulum-Golgi intermediate compartment membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein. Vacuole membrane; Multi-pass membrane protein. Endoplasmic reticulum.

Gene Ontology (GO) - Cellular Components for VMP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000407 pre-autophagosomal structure IBA --
GO:0000421 autophagic vacuole membrane ISS --
GO:0005783 endoplasmic reticulum IDA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IBA --
genes like me logo Genes that share ontologies with VMP1: view

No data available for Subcellular locations from COMPARTMENTS for VMP1 Gene

Pathways for VMP1 Gene

SuperPathways for VMP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VMP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006887 exocytosis IBA --
GO:0006914 autophagy IEA --
GO:0007029 endoplasmic reticulum organization IBA --
GO:0007030 Golgi organization IBA --
GO:0007566 embryo implantation IEA --
genes like me logo Genes that share ontologies with VMP1: view

No data available for Pathways by source for VMP1 Gene

Transcripts for VMP1 Gene

Unigene Clusters for VMP1 Gene

Vacuole membrane protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for VMP1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for VMP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c
SP1: - - - -
SP2:
SP3: -
SP4:
SP5: -
SP6: -
SP7:

Relevant External Links for VMP1 Gene

GeneLoc Exon Structure for
VMP1
ECgene alternative splicing isoforms for
VMP1

Expression for VMP1 Gene

mRNA expression in normal human tissues for VMP1 Gene

mRNA differential expression in normal tissues according to GTEx for VMP1 Gene

This gene is overexpressed in Whole Blood (9.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for VMP1 Gene

SOURCE GeneReport for Unigene cluster for VMP1 Gene Hs.444569

genes like me logo Genes that share expressions with VMP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for VMP1 Gene

Orthologs for VMP1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for VMP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia VMP1 35
  • 99.84 (n)
  • 100 (a)
VMP1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia VMP1 35
  • 94.5 (n)
  • 96.06 (a)
VMP1 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia VMP1 35
  • 94.91 (n)
  • 96.06 (a)
VMP1 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Vmp1 35
  • 91.05 (n)
  • 94.09 (a)
Vmp1 16
Vmp1 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 89 (a)
OneToMany
-- 36
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 76 (a)
OneToMany
-- 36
  • 90 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Vmp1 35
  • 90.89 (n)
  • 94.83 (a)
chicken
(Gallus gallus)
Aves VMP1 35
  • 80.54 (n)
  • 85.47 (a)
VMP1 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia VMP1 36
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.13697 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.11181 35
vmp1 35
  • 76.85 (n)
  • 81.28 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.982 35
vmp1 35
  • 69.88 (n)
  • 73.58 (a)
vmp1 36
  • 73 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010304 35
  • 57.25 (n)
  • 53.63 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32087 36
  • 43 (a)
OneToMany
Tango5 35
  • 56.27 (n)
  • 56.18 (a)
Tango5 36
  • 40 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea epg-3 35
  • 54.79 (n)
  • 49.17 (a)
epg-3 36
  • 39 (a)
OneToOne
Y37D8A.22 37
  • 51 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G05360 35
  • 50.64 (n)
  • 39.88 (a)
corn
(Zea mays)
Liliopsida Zm.17241 35
rice
(Oryza sativa)
Liliopsida Os.14351 35
Os01g0778700 35
  • 51.13 (n)
  • 40.96 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.10369 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6481 36
  • 58 (a)
OneToOne
Species with no ortholog for VMP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for VMP1 Gene

ENSEMBL:
Gene Tree for VMP1 (if available)
TreeFam:
Gene Tree for VMP1 (if available)

Paralogs for VMP1 Gene

Pseudogenes.org Pseudogenes for VMP1 Gene

genes like me logo Genes that share paralogs with VMP1: view

No data available for Paralogs for VMP1 Gene

Variants for VMP1 Gene

Sequence variations from dbSNP and Humsavar for VMP1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs950578 -- 59,756,231(+) CTGAA(A/G)AGAAT intron-variant
rs981508 -- 59,783,322(+) TATTT(A/G)TATTC intron-variant
rs1018242 -- 59,728,159(-) GAAAG(C/G)CTATA intron-variant
rs1080655 -- 59,825,028(-) TTTGG(G/T)TCTAT intron-variant
rs1292060 -- 59,836,488(-) ATGTG(C/T)GGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VMP1 Gene

Variant ID Type Subtype PubMed ID
nsv833501 CNV Loss 17160897
nsv908651 CNV Loss 21882294
dgv3238n71 CNV Loss 21882294
esv2483856 CNV Deletion 19546169
nsv512497 CNV Loss 21212237
esv2716083 CNV Deletion 23290073
esv2662935 CNV Deletion 23128226
esv998658 CNV Gain 20482838
nsv821151 CNV Deletion 20802225
nsv828072 CNV Gain+Loss 20364138

Relevant External Links for VMP1 Gene

HapMap Linkage Disequilibrium report
VMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VMP1 Gene

Disorders for VMP1 Gene

No disorders were found for VMP1 Gene.

No data available for UniProtKB/Swiss-Prot for VMP1 Gene

Publications for VMP1 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. Cloning and expression of the rat vacuole membrane protein 1 (VMP1), a new gene activated in pancreas with acute pancreatitis, which promotes vacuole formation. (PMID: 11785947) Dusetti N.J. … Iovanna J.L. (Biochem. Biophys. Res. Commun. 2002) 2 3
  3. Reduced expression of vacuole membrane protein 1 affects the invasion capacity of tumor cells. (PMID: 17724469) Sauermann M. … Arlt D. (Oncogene 2008) 3 4
  4. The TP53INP2 protein is required for autophagy in mammalian cells. (PMID: 19056683) Nowak J. … Iovanna J.L. (Mol. Biol. Cell 2009) 3 4
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3

Products for VMP1 Gene

Sources for VMP1 Gene

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