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VMO1 Gene

protein-coding GIFtS: 41
GCID: GC17M004688

Vitelline Membrane Outer Layer 1 Homolog (Chicken)

Search for VMO1
at

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Vitelline Membrane Outer Layer 1 Homolog (Chicken)¹ ²
ERGA6350²
PRO21055²
Vitelline Membrane Outer Layer Protein 1 Homolog²

External Ids:	HGNC: 30387¹	Entrez Gene: 284013²	Ensembl: ENSG00000182853⁷	UniProtKB: Q7Z5L0³

Export aliases for VMO1 gene to outside databases

Previous GC identifers: GC17M004636 GC17M004576

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for VMO1 Gene:

VMO1 (vitelline membrane outer layer 1 homolog (chicken)) is a protein-coding gene.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:

NC_000017.11 NC_018928.2 NT_010718.17

Regulatory elements:

Regulatory transcription factor binding sites in the VMO1 gene promoter:
STAT1 AP-1 ATF-2 Olf-1 FOXD1 STAT1beta Lmo2 STAT1alpha c-Jun LyF-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: VMO1 promoter sequence

Search Chromatin IP Primers for VMO1

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat VMO1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.2 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13.2

VMO1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
VMO1 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17M004688: view genomic region (about GC identifiers)

Start:	4,688,580 bp from pter	End:	4,689,729 bp from pter
Size:	1,150 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: VMO1_HUMAN, Q7Z5L0 (See protein sequence)

Recommended Name: Vitelline membrane outer layer protein 1 homolog precursor

Size: 202 amino acids; 21534 Da

Secondary accessions: C9JQ15 E9PAU9 E9PGP4 Q3SXP1 Q8IUY1

Alternative splicing: 4 isoforms: Q7Z5L0-1 Q7Z5L0-2 Q7Z5L0-3 Q7Z5L0-4 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for VMO1: NX_Q7Z5L0

Explore proteomics data for VMO1 at MOPED

See VMO1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (4 alternative transcripts):

NP_001138411.1 NP_001138412.1 NP_001138413.1 NP_872372.1

ENSEMBL proteins:

ENSP00000408166 ENSP00000390450 ENSP00000328397 ENSP00000346133

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:

IPR005515 VOMI

Graphical View of Domain Structure for InterPro Entry Q7Z5L0

ProtoNet protein and cluster: Q7Z5L0

UniProtKB/Swiss-Prot: VMO1_HUMAN, Q7Z5L0

Similarity: Belongs to the VMO1 family

VMO1 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Phenotypes:
2 GenomeRNAi human phenotypes for VMO1:

Decreased viability of wild-ty

Increased G1 DNA content

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

VMO1_HUMAN, Q7Z5L0: Secreted (Probable)

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
extracellular	4
cytosol	1
endoplasmic reticulum	1
mitochondrion	1
peroxisome	1

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Gene Ontology (GO): 2 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	--	--
GO:0070062	extracellular vesicular exosome	IDA	19056867

VMO1 for ontologies About GeneDecksing

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

Search GeneGlobe Interaction Network for VMO1

Gene Ontology (GO): 1 biological process term: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0030704	vitelline membrane formation	IEA	--

VMO1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for VMO1 gene (4 alternative transcripts):

NM_001144939.1 NM_001144940.1 NM_001144941.1 NM_182566.2

Unigene Cluster for VMO1:

Vitelline membrane outer layer 1 homolog (chicken)

Hs.122561 [show with all ESTs]

Unigene Representative Sequence: BI838614

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000441199 ENST00000416307 ENST00000328739(uc002fyx.3 uc010vsh.2 uc010vsi.2)

ENST00000354194(uc002fyy.3)

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Additional mRNA sequence:

AF521892.1 AY359099.1 BC038467.1 BC104194.2 BC104195.1

6 DOTS entries:

DT.436034 DT.80102098 DT.92418266 DT.95365922 DT.100022754 DT.100755071

Selected AceView cDNA sequences (see all 34):

BQ575991 CA418809 AY359099 T35723 CD367284 CB528310 AI096808 AA371985

BU726217 BM693934 CD367473 AW963390 BM704806 NM_182566 AF521892 BE218112

BI836994 AI373466 BE218357 BC038467 BU684331 AI478392 CD369385 BE669879

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for VMO1 About this scheme

ExUns:	1	^	2a	·	2b	^	3a	·	3b
SP1:					-
SP2:
SP3:			-		-

ECgene alternative splicing isoforms for VMO1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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VMO1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TGCACAGGCA

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VMO1 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

VMO1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.122561

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for VMO1 gene from Selected species (see all 13) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Vmo1^{1 , 5}	vitelline membrane outer layer 1 homolog (chicken)^{1, 5}	73.3(n)¹ 71.64(a)¹		11 (42.99 cM)⁵ 327956¹ NM_001013607.1¹ NP_001013625.1¹ 70513516⁵
chicken (Gallus gallus)	Aves	VMO1¹	vitelline membrane outer layer 1 homolog (chicken)	58.28(n) 59.12(a)		418974 NM_001167761.1 NP_001161233.1
lizard (Anolis carolinensis)	Reptilia	VMO1⁶	vitelline membrane outer layer 1 homolog (chicken)...	39(a)	1 ↔ 1	6(35096256-35101548)
tropical clawed frog (Xenopus tropicalis)	Amphibia	LOC101731130¹	vitelline membrane outer layer protein 1 homolog	57.37(n) 56.97(a)		101731130 XM_004918995.1 XP_004919052.1
zebrafish (Danio rerio)	Actinopterygii	LOC793369¹	vitelline membrane outer layer protein 1 homolog	54.27(n) 53.66(a)		793369 XM_001332044.5 XP_001332080.2
worm (Caenorhabditis elegans)	Secernentea	Y57G11A.2⁶ Y38H6C.19⁶ (see all 12)	Protein Y38H6C.19 (Y38H6C.19) mRNA, complete cds (see all 12)	8(a) 36(a) (see all 12)	many → 1 many → 1 (see all 12)	IV(14517023-14519536) WBGene00013290 V(20552300-20553053) WBGene00012631

ENSEMBL Gene Tree for VMO1 (if available)
TreeFam Gene Tree for VMO1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs58428268^1,2	C,F	--	4688183(+)	`AATGCC/TAAGTT`	4	--	int¹		1		WA	2
rs138092470^1,2		--	4688250(+)	`CATGGC/TGTCTC`	4	--	int¹		0	--	--	--	--
rs185726573^1,2	C	--	4688338(+)	`CACGGC/TGAAAC`	4	--	int¹		0	--	--	--	--
rs188609428^1,2		--	4688400(+)	`GTGGCA/GGGCGC`	4	--	int¹		0	--	--	--	--
rs111913196^1,2	C,F	--	4688519(+)	`GCGATT/ACTCCG`	4	--	int¹		2		CSA	4
rs71367855^1,2	C	--	4688530(+)	`TCTCAAATAAAT AAATT/-AATAA`	4	--	int¹		1		NA	2
rs114217769^1,2	C,F	--	4688600(+)	`TTTAAT/CAGCAA`	4	--	ut3¹		1		WA	118
rs147164089^1,2		--	4688638(+)	`AGAGAC/GCGGCG`	4	--	ut3¹		0	--	--	--	--
rs140800596^1,2	C,F	--	4688682(+)	`AGCGCG/ACGTCG`	5	/A /V	mis¹ ut3¹		2		NA EU	5307
rs192962559^1,2		--	4688704(+)	`GTCATC/TGCCGA`	5	N D	mis¹ ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for VMO1 (4688580 - 4689729 bp)

Structural Variations
Database of Genomic Variants (DGV) 3 variations for VMO1: About this table

Variant ID	Type	Subtype	PubMed ID
nsv907618	CNV	Loss	21882294
nsv833346	CNV	Loss	17160897
nsv833347	CNV	Loss	17160897

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for VMO1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with VMO1)

Utopia: connect your pdf to the dynamic
world of online information

Analysis and comparison of proteomic profiles of tear fluid from human, cow, sheep, and camel eyes. (PubMed id 22025569)^{1, 3} Shamsi F.A....Wu K. (amp 2011)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)^{1, 2} Zhang Z. and Henzel W.J. (Protein Sci. 2004)
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2} Clark H.F.... Gray A.M. (Genome Res. 2003)
Large-scale proteomics and phosphoproteomics of urinary exosomes. (PubMed id 19056867)¹ Gonzales P.A....Knepper M.A. (J. Am. Soc. Nephrol. 2009)
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)² Zody M.C.... Nusbaum C. (Nature 2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
(PubMed id )²

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 284013	HGNC: 30387	AceView: LOC284013	Ensembl:ENSG00000182853	euGenes: HUgn284013
ECgene: VMO1	H-InvDB: VMO1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for VMO1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for VMO1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for VMO1 gene:
Search GeneIP for patents involving VMO1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes VMO1 gene at Home site.

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VMO1 Gene

Vitelline Membrane Outer Layer 1 Homolog (Chicken)

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VMO1 Gene

Vitelline Membrane Outer Layer 1 Homolog (Chicken)

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