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Aliases & Descriptions for VMO1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ERGA6350 2 MGC125880 2 MGC125881 2 PRO21055 2
Descriptions vitelline membrane outer layer 1 2 vitelline membrane outer layer 1 homolog (chicken) 2
Search outside databases for aliases for VMO1 gene
Summaries for VMO1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Location for VMO1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the VMO1 gene Entrez Gene cytogenetic band: 17p13.2 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13.2 VMO1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M004636:
(about GC identifiers )
Start:
4,635,320 bp from pter
End:
4,636,473 bp from pter
Size:
1,154 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000017.9 NT_010718.15 Proteins for VMO1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: VMO1_HUMAN, Q7Z5L0 (See
protein sequence )Recommended Name: Vitelline membrane outer layer protein 1 homolog precursor Size : 202 amino acids; 21534 Da
Subcellular location : Secreted (Probable)
Secondary accessions : Q3SXP1
REFSEQ proteins (4 alternative transcripts):
NP_001138411.1 NP_001138412.1 NP_001138413.1 NP_872372.1 ENSEMBL proteins: ENSP00000346133 ENSP00000328397 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: VMO1 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
About this table Antibodies for VMO1: Assays for VMO1:
Protein
Domains/ Families for VMO1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q7Z5L0 ProtoNet protein and cluster: Q7Z5L0
UniProtKB/Swiss-Prot: VMO1_HUMAN, Q7Z5L0 Similarity : Belongs to the VMO1 family
Gene Function for VMO1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001144939 Applied Biosystems Silencer ® siRNAs for VMO1 Sigma-Aldrich siRNA for VMO1 Sigma-Aldrich shRNA for VMO1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_182566 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008316 structural constituent of vitelline membrane
IEA --
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Pathways & Interactions for VMO1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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--1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0030704 vitelline membrane formation
IEA --
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Drugs & Compounds for VMO1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for VMO1
Transcripts for VMO1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001144939 Sigma-Aldrich siRNA for VMO1 Sigma-Aldrich shRNA for VMO1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_182566
REFSEQ mRNAs for VMO1 gene (4 alternative transcripts): NM_001144939.1 NM_001144940.1 NM_001144941.1 NM_182566.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_182566
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001144939  
Additional cDNA sequence: AF521892.1 AY359099.1 BC038467.1 BC104194.2 BC104195.1
6 DOTS entries : DT.436034 DT.80102098 DT.92418266 DT.95365922 DT.100022754 DT.100755071
24/34 AceView cDNA sequences (see all 34
):CA418809 AI096808 T35723 BQ575991 CD367284 CD367473 BU726217 BM693934 AA371985 AY359099 CB528310 BI836994 AI478392 BE218112 AI373466 NM_182566 AW963390 BU684331 AF521892 BM704806 BC038467 BE218357 CD369385 BF511222
highest scoring ESTs for VMO1 :AF521892 AY359099 BF511222 BG149530 BM693934 BM704806 BU684331 CB528310 AA371985 AA977975
Unigene Cluster for VMO1: Vitelline membrane outer layer 1 homolog (chicken) Hs.122561 [show with all ESTs ] Unigene Representative Sequence: BI838614 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for VMO1 ExUns: 1 ^ 2a · 2b ^ 3a · 3b SP1 :     -       SP2 :           SP3 :   -   -      
About this scheme ECgene alternative splicing isoforms for VMO1 2 Ensembl transcripts including schematic representations : ENST00000354194
ENST00000328739
Expression for VMO1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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VMO1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for VMO1 1 / 2 / 3
5 probe-sets matching VMO1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGCACAGGCASOURCE GeneReport for Unigene cluster: Hs.122561
Orthologs for VMO1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for VMO1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for VMO1 ENSEMBL Gene Tree for VMO1 Paralogs for VMO1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for VMO1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for VMO1 (up to first 250kb)
Disorders & Mutations for VMO1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Medical News for VMO1 (Possibly Related Articles in
Doctor's Guide )
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Publications for VMO1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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5 PubMed articles for VMO1 gene :
Search for VMO1
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VMO1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing VMO1
(According to HUGE )
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Specialized Databases showing VMO1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for VMO1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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