VIT Gene
protein-coding GIFtS : 48
GCID: GC02 P036835
vitrin
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Aliasesfor VIT gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Export aliases for VIT gene to outside databases Previous GC identifers: GC02P036888 GC02P037070 GC02P036898 GC02P036664
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Summariesfor VIT gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: VITRN_HUMAN, Q6UXI7 Function : Promotes matrix assembly and cell adhesiveness (By similarity)
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Genomic Viewsfor VIT gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_022184.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the VIT gene promoter: STAT5B STAT1 AML1a STAT4 STAT6 STAT1beta STAT5A STAT1alpha STAT2 STAT3 Other transcription factors Search SABiosciences Chromatin IP Primers for VIT Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VIT
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p22.2 Ensembl cytogenetic band: 2p22.2 HGNC cytogenetic band: 2p22.2 VIT Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P036835: view genomic region
(about GC identifiers )
Start:
36,923,833 bp from pter
End:
37,041,937 bp from pter
Size:
118,105 bases
Orientation:
plus strand
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Proteinsfor VIT gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: VITRN_HUMAN, Q6UXI7 (See
protein sequence )Recommended Name: Vitrin precursor Size : 678 amino acids; 73930 Da
Subunit : Binds dermatan sulfate and chondroitin sulfate (By similarity)
Subcellular location : Secreted, extracellular space, extracellular matrix (By similarity)
Secondary accessions : A1A526 A6NKI9 A8K7Y4 E9PF47 Q6P7T3 Q96DM8 Q96DT1 Q9UDN0Alternative splicing : 5 isoforms : Q6UXI7-1 Q6UXI7-2 Q6UXI7-3 Q6UXI7-4 Q6UXI7-5 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for VIT: NX_Q6UXI7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6UXI7 VIT Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (5 alternative transcripts):
NP_001171440.1 NP_001171441.1 NP_001171442.1 NP_001171443.1 NP_444506.2 ENSEMBL proteins: ENSP00000368544 ENSP00000393561 ENSP00000417874 ENSP00000384154 ENSP00000368543 ENSP00000385658 ENSP00000419251 ENSP00000374625 Human Recombinant Protein Products for VIT: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005578 proteinaceous extracellular matrix
-- -- GO:0005614 interstitial matrix
IEA -- GO:0031012 extracellular matrix
-- --
VIT for ontologies About GeneDecksing VIT Antibody Products: Assay Products for VIT:
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Protein
Domains / Familiesfor VIT gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
VIT for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6UXI7 ProtoNet protein and cluster: Q6UXI7
1 Blocks protein family : IPB004043 LCCL domain UniProtKB/Swiss-Prot: VITRN_HUMAN, Q6UXI7 Similarity : Contains 1 LCCL domainSimilarity : Contains 2 VWFA domains
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Functionfor VIT gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: VITRN_HUMAN, Q6UXI7 Function : Promotes matrix assembly and cell adhesiveness (By similarity)
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005539 glycosaminoglycan binding
IEA --
VIT for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for VIT : 1 MGI phenotypic allele for Vit (no phenotypes)
VIT for phenotypes About GeneDecksing Animal Models: Mouse knock-out Vit tm1Lex for VITClone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VIT (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VIT (see all 5 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): VIT (NM_053276 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VIT Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VIT
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VIT
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Pathways & Interactionsfor VIT gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VIT Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0010811 positive regulation of cell-substrate adhesion
IEA -- GO:0030198 extracellular matrix organization
IEA --
VIT for ontologies About GeneDecksing
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Drugs & Compoundsfor VIT gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for VIT Search CenterWatch for drugs/clinical trials and news about VIT / VITRN
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Transcriptsfor VIT gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for VIT gene (5 alternative transcripts): NM_001177969.1 NM_001177970.1 NM_001177971.1 NM_001177972.1 NM_053276.3 Unigene Cluster for VIT:
Vitrin Hs.137415 [show with all ESTs ] Unigene Representative Sequence: NM_053276 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000379242 (uc002rpl.3 ) ENST00000457137 (uc002rpk.3 ) ENST00000497382 ENST00000404084 ENST00000379241 ENST00000401530 ENST00000464309 ENST00000389975 (uc010ynf.2 uc002rpm.3 uc010ezv.3 uc010ezw.3 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VIT (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VIT (see all 5 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): VIT (NM_053276 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VIT Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VIT
Additional cDNA sequence: AF063833.1 AK056772.1 AK292149.1 AK299426.1 AL832679.1 AY358338.1 BC061519.1 BC128260.1
7 DOTS entries : DT.437920 DT.40316582
DT.100736925 DT.100746868 DT.100023037 DT.97811644 DT.99976703 24/56 AceView cDNA sequences (see all 56 ):
BU737859 AK056772 NM_053276 CA421947 BF726449 BM712204 BX099804 AW316554 CD679226 BF037138 BM670265 BF726421 BM700383 AL832679 AA227978 BM700057 BF727228 AA346825 AA687616 AY358338 BF726450 BE743922 BC061519 CD516878 GeneLoc Exon Structure
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Expression for VIT gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section VIT expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGCACAGAAAAbout this image VIT expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See VIT Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for VIT SOURCE GeneReport for Unigene cluster: Hs.137415 SABiosciences Custom PCR Arrays for VIT Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VITBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat VIT QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VIT QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VIT In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VIT
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Orthologsfor VIT gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for VIT gene from 4/13 species (see all 13 ) About this table
ENSEMBL Gene Tree for VIT (if available)TreeFam Gene Tree for VIT (if available)
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Paralogsfor VIT gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for VIT gene VWA1 2 MATN4 2 COL14A1 2 COL9A1 2 MATN3 2 MATN2 2 COL12A1 2 COL9A3 2 COCH 2 COL9A2 2 COL20A1 2 VWA2 2 COL21A1 2 MATN1 2 5 SIMAP similar genes for VIT using alignment to 4 protein entries: VITRN_HUMAN (see all proteins ):ITGA2 COL21A1 COCH COL6A6 COL6A5
VIT for paralogs About GeneDecksing
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Genomic Variantsfor VIT gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for VIT (36923833 - 37041937 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 5 variations for VIT 2 CNVs : 58986 67478 3 Indels : 26680 40323 61760
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor VIT gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
VIT for disorders About GeneDecksing 1 disease for VIT : About MalaCards mastocytosis 2 diseases from the University of Copenhagen DISEASES database for VIT :Hypersensitivity reaction type I disease Mastocytosis Human Genome Epidemiology (HuGE) Navigator: VIT (4 documents) Export disorders for VIT gene to outside databases
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Publicationsfor VIT gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for VIT gene integrated from 9 sources : (articles sorted by number of sources associating them with VIT) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) VIT-1: the second member of a new branch of the von Willebrand factor A domain superfamily. (PubMed id 10830112) 1 , 2 Mayne R.... Narayana S. (1999) Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. (PubMed id 12388743) 1 , 9 Whittaker C.A. and Hynes R.O. (2002) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 2 Hillier L.W....Wilson R.K. (2005) Gene expression profile of the human trabecular meshwork: NEIBank sequence tag analysis. (PubMed id 12766061) 1 Tomarev S.I....Malyukova I. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Toward a complete human genome sequence. (PubMed id 9847074) 1 Wilson R. (1998)
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External Searches for VIT gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VIT gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing VIT gene
(According to HUGE )
About This Section --
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Specialized Databases showing VIT gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for VIT Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for VIT gene: Search GeneIP for patents involving VIT GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor VIT gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for VIT OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for VIT OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VIT OriGene Protein Over-expression Lysate for VIT Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for VIT OriGene 3'-UTR Clone for VIT OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VIT OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VIT Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for VIT OriGene Custom Protein Services for VIT OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat VIT Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing VIT QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VIT QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat VIT QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VIT QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VIT
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VIT Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VIT
ThermoFisher Antibodies for VIT
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VIT
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Aliases for VIT
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Expression for VIT
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