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Aliases for VIPR1-AS1 Gene

Subcategory (RNA class) for VIPR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIPR1-AS1 Gene

  • VIPR1 Antisense RNA 1 2 3 5
  • VIPR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VIPR1-AS1 Gene

Previous GeneCards Identifiers for VIPR1-AS1 Gene

  • GC00U933100

Summaries for VIPR1-AS1 Gene

GeneCards Summary for VIPR1-AS1 Gene

VIPR1-AS1 (VIPR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIPR1-AS1 Gene

Genomics for VIPR1-AS1 Gene

Regulatory Elements for VIPR1-AS1 Gene

Enhancers for VIPR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G042501 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +26.2 26249 10.5 HDGF PKNOX1 FOXA2 ATF1 SIN3A YY1 ZNF143 FOS SP3 NFYC SEC22C VIPR1-AS1 SS18L2 NKTR CCDC13-AS1 VIPR1
GH03G042177 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +353.3 353316 4.7 HDGF PKNOX1 SIN3A ARID4B FOS DEK SP5 JUNB NFYC SMARCB1 VIPR1 VIPR1-AS1 TRAK1 TPMTP2 GC03P042217
GH03G042492 0.9 Ensembl dbSUPER 11.6 +40.7 40658 0.8 RFX1 ZIC2 CTBP1 ZFHX2 GATA3 ZNF366 IKZF1 EED IKZF2 EGR2 VIPR1-AS1 VIPR1
GH03G042247 0.7 ENCODE 10.8 +285.6 285575 0.2 CTCF PKNOX1 ZNF654 ZNF362 RB1 WRNIP1 TRIM22 ZNF384 REST RAD21 VIPR1 VIPR1-AS1 ENSG00000212145 LOC105377048 RNU4-78P
GH03G042183 0.7 ENCODE 10.3 +348.7 348737 2.6 BCOR USF1 ZNF146 JUN ZMYM3 ZNF384 CEBPG GATA2 POLR2A FOS VIPR1 VIPR1-AS1 TRAK1 GC03P042217 TPMTP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VIPR1-AS1 Gene

Chromosome:
3
Start:
42,506,465 bp from pter
End:
42,533,258 bp from pter
Size:
26,794 bases
Orientation:
Minus strand

Genomic View for VIPR1-AS1 Gene

Genes around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIPR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIPR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIPR1-AS1 Gene

Proteins for VIPR1-AS1 Gene

Post-translational modifications for VIPR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIPR1-AS1 Gene

Domains & Families for VIPR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIPR1-AS1 Gene

Function for VIPR1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIPR1-AS1 Gene

Localization for VIPR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIPR1-AS1 Gene

Pathways & Interactions for VIPR1-AS1 Gene

SuperPathways for VIPR1-AS1 Gene

No Data Available

Interacting Proteins for VIPR1-AS1 Gene

Gene Ontology (GO) - Biological Process for VIPR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIPR1-AS1 Gene

Drugs & Compounds for VIPR1-AS1 Gene

No Compound Related Data Available

Transcripts for VIPR1-AS1 Gene

mRNA/cDNA for VIPR1-AS1 Gene

(36) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VIPR1-AS1 Gene

No ASD Table

Relevant External Links for VIPR1-AS1 Gene

GeneLoc Exon Structure for
VIPR1-AS1
ECgene alternative splicing isoforms for
VIPR1-AS1

Expression for VIPR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VIPR1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIPR1-AS1 Gene

This gene is overexpressed in Lung (x7.7) and Colon - Transverse (x4.2).
genes like me logo Genes that share expression patterns with VIPR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VIPR1-AS1 Gene

Orthologs for VIPR1-AS1 Gene

Evolution for VIPR1-AS1 Gene

ENSEMBL:
Gene Tree for VIPR1-AS1 (if available)
TreeFam:
Gene Tree for VIPR1-AS1 (if available)

No data available for Orthologs for VIPR1-AS1 Gene

Paralogs for VIPR1-AS1 Gene

No data available for Paralogs for VIPR1-AS1 Gene

Variants for VIPR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIPR1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000954513 -- 42,532,813(+) ACACG(C/T)TAAGG intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001006809 -- 42,532,431(+) TCCAG(A/G)GTCAC intron-variant
rs1001289574 -- 42,531,584(+) GCCCC(C/T)TGGGT intron-variant
rs1002101458 -- 42,530,931(+) GGCTG(A/G)GGTAT intron-variant, nc-transcript-variant, reference, stop-gained
rs1003679680 -- 42,532,525(+) AGGCT(A/G)CACTC intron-variant

Relevant External Links for VIPR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIPR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VIPR1-AS1 Gene

Disorders for VIPR1-AS1 Gene

Relevant External Links for VIPR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VIPR1-AS1

No disorders were found for VIPR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIPR1-AS1 Gene

Publications for VIPR1-AS1 Gene

No publications were found for VIPR1-AS1 Gene.

Products for VIPR1-AS1 Gene

Sources for VIPR1-AS1 Gene

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