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Aliases for VIPR1-AS1 Gene

Subcategory (RNA class) for VIPR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIPR1-AS1 Gene

  • VIPR1 Antisense RNA 1 2 3 5
  • VIPR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VIPR1-AS1 Gene

Previous GeneCards Identifiers for VIPR1-AS1 Gene

  • GC00U933100

Summaries for VIPR1-AS1 Gene

GeneCards Summary for VIPR1-AS1 Gene

VIPR1-AS1 (VIPR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIPR1-AS1 Gene

Genomics for VIPR1-AS1 Gene

Regulatory Elements for VIPR1-AS1 Gene

Enhancers for VIPR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F042501 1.2 FANTOM5 Ensembl ENCODE 12.3 +26.2 26174 10.6 ATF1 PKNOX1 SIN3A YY1 ZNF143 FOS SP3 NFYC MIER2 REST SEC22C VIPR1-AS1 SS18L2 NKTR CCDC13-AS1 VIPR1
GH03F042488 0.7 Ensembl ENCODE 11.6 +42.1 42056 4.8 YBX1 RAD21 ZNF366 ETV6 FOS CREM EGR2 JUNB ZNF217 SP1 VIPR1-AS1 SEC22C VIPR1
GH03F042247 0.6 ENCODE 10.8 +285.6 285575 0.2 CTCF PKNOX1 ZNF362 ZNF654 WRNIP1 TRIM22 ZNF384 REST RAD21 ZNF664 VIPR1 VIPR1-AS1 ENSG00000212145 LOC105377048 RNU4-78P
GH03F042229 0.8 Ensembl 10.4 +303.3 303331 0.7 CTCF GATA3 ZNF654 IKZF1 SMC3 REST RAD21 CCK VIPR1 VIPR1-AS1 RNU4-78P LOC105377048
GH03F042183 1.2 Ensembl ENCODE 10.3 +348.7 348737 2.6 BCOR ZNF146 USF1 JUN NFYC ZMYM3 CEBPB USF2 ZNF384 MNT VIPR1 VIPR1-AS1 TRAK1 GC03P042217 TPMTP2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VIPR1-AS1 Gene

Chromosome:
3
Start:
42,506,465 bp from pter
End:
42,533,258 bp from pter
Size:
26,794 bases
Orientation:
Minus strand

Genomic View for VIPR1-AS1 Gene

Genes around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIPR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIPR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIPR1-AS1 Gene

Proteins for VIPR1-AS1 Gene

Post-translational modifications for VIPR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIPR1-AS1 Gene

Domains & Families for VIPR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIPR1-AS1 Gene

Function for VIPR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIPR1-AS1 Gene

Localization for VIPR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIPR1-AS1 Gene

Pathways & Interactions for VIPR1-AS1 Gene

SuperPathways for VIPR1-AS1 Gene

No Data Available

Interacting Proteins for VIPR1-AS1 Gene

Gene Ontology (GO) - Biological Process for VIPR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIPR1-AS1 Gene

Transcripts for VIPR1-AS1 Gene

mRNA/cDNA for VIPR1-AS1 Gene

(36) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VIPR1-AS1 Gene

No ASD Table

Relevant External Links for VIPR1-AS1 Gene

GeneLoc Exon Structure for
VIPR1-AS1
ECgene alternative splicing isoforms for
VIPR1-AS1

Expression for VIPR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VIPR1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIPR1-AS1 Gene

This gene is overexpressed in Lung (x7.7) and Colon - Transverse (x4.2).
genes like me logo Genes that share expression patterns with VIPR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VIPR1-AS1 Gene

Orthologs for VIPR1-AS1 Gene

Evolution for VIPR1-AS1 Gene

ENSEMBL:
Gene Tree for VIPR1-AS1 (if available)
TreeFam:
Gene Tree for VIPR1-AS1 (if available)

No data available for Orthologs for VIPR1-AS1 Gene

Paralogs for VIPR1-AS1 Gene

No data available for Paralogs for VIPR1-AS1 Gene

Variants for VIPR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIPR1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111818459 -- 42,531,919(+) AGGGC(A/T)GGCAA intron-variant
rs112031322 -- 42,532,417(+) TCCCA(C/T)CCCAA intron-variant
rs113036979 -- 42,533,429(+) GGGGG(-/A)CGGGG intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs11311750 -- 42,532,013(+) ACCCC(-/T)GTCCT intron-variant
rs113287487 -- 42,533,710(+) TGATT(C/T)AAAGA intron-variant, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for VIPR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIPR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VIPR1-AS1 Gene

Disorders for VIPR1-AS1 Gene

Relevant External Links for VIPR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VIPR1-AS1

No disorders were found for VIPR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIPR1-AS1 Gene

Publications for VIPR1-AS1 Gene

No publications were found for VIPR1-AS1 Gene.

Products for VIPR1-AS1 Gene

Sources for VIPR1-AS1 Gene

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