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Aliases for VIPR1-AS1 Gene

Subcategory (RNA class) for VIPR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIPR1-AS1 Gene

  • VIPR1 Antisense RNA 1 2 3 5
  • VIPR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VIPR1-AS1 Gene

Previous GeneCards Identifiers for VIPR1-AS1 Gene

  • GC00U933100

Summaries for VIPR1-AS1 Gene

GeneCards Summary for VIPR1-AS1 Gene

VIPR1-AS1 (VIPR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VIPR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIPR1-AS1 Gene

Genomics for VIPR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for VIPR1-AS1 Gene

Promoters and enhancers for VIPR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I042532 Enhancer 0.5 dbSUPER 550.8 -0.3 -259 1.8 ZFHX2 FOXA2 MAFK EGR2 VIPR1-AS1 SEC22C VIPR1 SS18L2
GH03I042530 Enhancer 0.4 dbSUPER 550.8 +1.7 1674 2 ZFHX2 EGR2 VIPR1-AS1 VIPR1
GH03I042501 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.3 +26.2 26249 10.5 PKNOX1 ATF1 SIN3A FOS SP3 RXRA NFYC REST SMARCA4 PBX2 VIPR1 NKTR SEC22C VIPR1-AS1 SNRK-AS1 SS18L2 ZNF662 CCDC13-AS1
GH03I042177 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +353.3 353315 4.7 HDGF PKNOX1 ARID4B FOS ATF7 DEK SP5 NFYC MAFF SMARCA4 VIPR1 VIPR1-AS1 TRAK1 TPMTP2 GC03P042217
GH03I042492 Enhancer 0.8 Ensembl dbSUPER 11.6 +40.7 40657 0.8 RFX1 ZIC2 CTBP1 GATA3 ZNF366 GABPB1 IKZF1 ZNF444 IKZF2 SPI1 VIPR1-AS1 VIPR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VIPR1-AS1 Gene

Genomic Locations for VIPR1-AS1 Gene
chr3:42,506,465-42,533,258
(GRCh38/hg38)
Size:
26,794 bases
Orientation:
Minus strand
chr3:42,548,016-42,574,750
(GRCh37/hg19)

Genomic View for VIPR1-AS1 Gene

Genes around VIPR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIPR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIPR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIPR1-AS1 Gene

Proteins for VIPR1-AS1 Gene

Post-translational modifications for VIPR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIPR1-AS1 Gene

Domains & Families for VIPR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIPR1-AS1 Gene

Function for VIPR1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIPR1-AS1 Gene

Localization for VIPR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VIPR1-AS1 Gene

Pathways & Interactions for VIPR1-AS1 Gene

SuperPathways for VIPR1-AS1 Gene

No Data Available

Interacting Proteins for VIPR1-AS1 Gene

Gene Ontology (GO) - Biological Process for VIPR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIPR1-AS1 Gene

Drugs & Compounds for VIPR1-AS1 Gene

No Compound Related Data Available

Transcripts for VIPR1-AS1 Gene

mRNA/cDNA for VIPR1-AS1 Gene

(36) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VIPR1-AS1 Gene

No ASD Table

Relevant External Links for VIPR1-AS1 Gene

GeneLoc Exon Structure for
VIPR1-AS1
ECgene alternative splicing isoforms for
VIPR1-AS1

Expression for VIPR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VIPR1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIPR1-AS1 Gene

This gene is overexpressed in Lung (x7.7) and Colon - Transverse (x4.2).
genes like me logo Genes that share expression patterns with VIPR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VIPR1-AS1 Gene

Orthologs for VIPR1-AS1 Gene

Evolution for VIPR1-AS1 Gene

ENSEMBL:
Gene Tree for VIPR1-AS1 (if available)
TreeFam:
Gene Tree for VIPR1-AS1 (if available)

No data available for Orthologs for VIPR1-AS1 Gene

Paralogs for VIPR1-AS1 Gene

No data available for Paralogs for VIPR1-AS1 Gene

Variants for VIPR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIPR1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000954513 -- 42,532,813(-) C/T upstream_transcript_variant
rs1001006809 -- 42,532,431(-) A/G intron_variant
rs1001289574 -- 42,531,584(-) C/T intron_variant
rs1002101458 -- 42,530,931(-) G/A non_coding_transcript_variant
rs1003679680 -- 42,532,525(-) G/A intron_variant

Additional Variant Information for VIPR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIPR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VIPR1-AS1 Gene

Disorders for VIPR1-AS1 Gene

Additional Disease Information for VIPR1-AS1

No disorders were found for VIPR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIPR1-AS1 Gene

Publications for VIPR1-AS1 Gene

No publications were found for VIPR1-AS1 Gene.

Products for VIPR1-AS1 Gene

Sources for VIPR1-AS1 Gene

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