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Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3 5

External Ids for VIM-AS1 Gene

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

Regulatory Elements for VIM-AS1 Gene

Enhancers for VIM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F017226 1.2 ENCODE 26.3 -1.6 -1553 10.6 HDGF PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207 VIM-AS1 LOC102724039 TRDMT1 ENSG00000273153 ENSG00000234961
GH10F017212 1.7 FANTOM5 Ensembl ENCODE 11.7 +14.0 14001 7.7 PKNOX1 ATF1 ARNT SIN3A FOS ZNF263 SP3 JUNB REST TBX21 VIM CUBN LOC105376438 VIM-AS1 TRDMT1
GH10F017021 1.7 FANTOM5 Ensembl ENCODE 11.5 +202.0 202045 13.3 PKNOX1 ATF1 ARNT SIN3A GATA2 CBX5 FOS JUNB NCOA1 TSHZ1 VIM CUBN LOC105376438 VIM-AS1 ENSG00000234961 TRDMT1 GC10P016843
GH10F017237 1 FANTOM5 ENCODE 17 -8.7 -8720 1.9 PKNOX1 RFX1 ZFP37 SIN3A OSR2 ZNF121 POLR2H GATA3 JUND POLR2A VIM-AS1 TRDMT1 VIM GC10P017237 ST8SIA6-AS1
GH10F016890 1.2 Ensembl ENCODE 11.9 +338.2 338230 1.8 ARNT KDM4B GTF2B REST MBD2 MEF2D SMARCA4 PBX2 HMBOX1 KDM1A LOC105376438 VIM ENSG00000234961 VIM-AS1 CUBN GC10P016843
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VIM-AS1 Gene

Chromosome:
10
Start:
17,214,239 bp from pter
End:
17,229,985 bp from pter
Size:
15,747 bases
Orientation:
Minus strand

Genomic View for VIM-AS1 Gene

Genes around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains & Families for VIM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways & Interactions for VIM-AS1 Gene

SuperPathways for VIM-AS1 Gene

No Data Available

Interacting Proteins for VIM-AS1 Gene

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIM-AS1 Gene

Transcripts for VIM-AS1 Gene

mRNA/cDNA for VIM-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VIM-AS1 Gene

VIM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1
ECgene alternative splicing isoforms for
VIM-AS1

Expression for VIM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.5) and Artery - Tibial (x4.1).

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene:

Hs.740502
genes like me logo Genes that share expression patterns with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIM-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs121917775 Pathogenic 17,229,873(+) TCTAC(A/G)AGGAG nc-transcript-variant, reference, missense
rs864309690 Likely pathogenic 17,229,437(+) AGGTC(-/C)GTGTC nc-transcript-variant, reference, frameshift-variant
rs1042003 -- 17,229,860(+) CGCCT(A/G)GGGGA nc-transcript-variant, reference, synonymous-codon
rs10692926 -- 17,219,290(+) TGCTA(-/AC/CA)GTTAA intron-variant
rs10752073 -- 17,222,487(+) CTCCT(C/T)TTCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VIM-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831801 CNV gain 17160897
nsv508571 CNV deletion 20534489
nsv1039697 CNV loss 25217958
esv2733617 CNV deletion 23290073

Relevant External Links for VIM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

Relevant External Links for VIM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VIM-AS1

No disorders were found for VIM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene

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