Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3 5

External Ids for VIM-AS1 Gene

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VIM-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

GeneHancer (GH) Regulatory Elements for VIM-AS1 Gene

Promoters and enhancers for VIM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I017226 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 576.3 -1.6 -1552 10.6 FEZF1 IRF4 ZNF213 E2F8 ZNF143 SP3 ZFP41 MEF2D ZNF610 ZNF585B VIM-AS1 VIM LOC105376438 TRDMT1 ENSG00000273153 ENSG00000234961
GH10I017237 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 17 -8.7 -8719 1.9 NCOA3 PKNOX1 MZF1 ZNF121 POLR2B GATA3 ZNF213 E2F8 POLR2A ADNP GC10P017237 VIM-AS1 TRDMT1 VIM ST8SIA6-AS1
GH10I017212 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +14.0 14000 7.7 PKNOX1 FOXA2 ARNT IRF4 ZNF766 FOS SP3 JUNB ZNF592 SMARCA4 VIM CUBN VIM-AS1 TRDMT1
GH10I017198 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 7 +29.4 29403 4.5 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 TRDMT1 LOC105376438 CUBN VIM-AS1 GC10P017139
GH10I016890 Enhancer 1.2 Ensembl ENCODE 11.9 +338.2 338229 1.8 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 POLR2B ARID2 ZNF143 ATF7 VIM ENSG00000234961 VIM-AS1 CUBN GC10P016843
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VIM-AS1 Gene

Genomic Locations for VIM-AS1 Gene
chr10:17,214,239-17,229,985
(GRCh38/hg38)
Size:
15,747 bases
Orientation:
Minus strand
chr10:17,256,238-17,271,984
(GRCh37/hg19)

Genomic View for VIM-AS1 Gene

Genes around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains & Families for VIM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

Phenotypes From GWAS Catalog for VIM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways & Interactions for VIM-AS1 Gene

SuperPathways for VIM-AS1 Gene

No Data Available

Interacting Proteins for VIM-AS1 Gene

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIM-AS1 Gene

Drugs & Compounds for VIM-AS1 Gene

No Compound Related Data Available

Transcripts for VIM-AS1 Gene

mRNA/cDNA for VIM-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VIM-AS1 Gene

VIM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1
ECgene alternative splicing isoforms for
VIM-AS1

Expression for VIM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.5) and Artery - Tibial (x4.1).

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene:

Hs.740502
genes like me logo Genes that share expression patterns with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIM-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1085307141 pathogenic, Cataract 30 17,230,709(-) A/G upstream_transcript_variant
rs121917775 pathogenic, not-provided, Cataract 30, not provided 17,229,873(-) G/A genic_upstream_transcript_variant, non_coding_transcript_variant
rs864309690 likely-pathogenic, pathogenic, Congenital cataract, Cataract 30 17,229,436(-) CC/C genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000052726 -- 17,228,351(-) C/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000104769 -- 17,228,140(-) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for VIM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2733617 CNV deletion 23290073
nsv1039697 CNV loss 25217958
nsv508571 CNV deletion 20534489
nsv831801 CNV gain 17160897

Additional Variant Information for VIM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

Additional Disease Information for VIM-AS1

No disorders were found for VIM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 2 3 58
  2. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene

Content
Loading form....