Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3

External Ids for VIM-AS1 Gene

ORGUL Members for VIM-AS1 Gene

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

Genomic Location for VIM-AS1 Gene

Start:
17,214,239 bp from pter
End:
17,229,985 bp from pter
Size:
15,747 bases
Orientation:
Minus strand

Genomic View for VIM-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIM-AS1 Gene

No data available for Regulatory Elements for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains for VIM-AS1 Gene

Gene Families for VIM-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VIM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways for VIM-AS1 Gene

SuperPathways for VIM-AS1 Gene

No Data Available

Interacting Proteins for VIM-AS1 Gene

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source for VIM-AS1 Gene

Transcripts for VIM-AS1 Gene

mRNA/cDNA for VIM-AS1 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VIM-AS1 Gene

VIM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1
ECgene alternative splicing isoforms for
VIM-AS1

Expression for VIM-AS1 Gene

mRNA expression in normal human tissues for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (4.5) and Artery - Tibial (4.1).

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene Hs.740502

genes like me logo Genes that share expressions with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIM-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1470379 -- 17,216,800(+) TTCTG(C/T)GTCCT intron-variant
rs5783537 -- 17,215,307(+) AGATG(-/C)CAAGG nc-transcript-variant
rs7068746 -- 17,215,558(+) GGTAA(A/G)TCCTT intron-variant
rs7081155 -- 17,221,141(+) ACTTA(C/T)AGTCT intron-variant
rs7083383 -- 17,218,574(+) GCAAT(C/G)ATATC intron-variant

Relevant External Links for VIM-AS1 Gene

HapMap Linkage Disequilibrium report
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

No disorders were found for VIM-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene

Back to Top

Content