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Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3 5

External Ids for VIM-AS1 Gene

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

Regulatory Elements for VIM-AS1 Gene

Enhancers for VIM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G017226 1.4 ENCODE dbSUPER 26.3 -1.6 -1553 10.6 CREB3L1 AGO1 FEZF1 ZNF143 ZNF263 SP3 TBX21 ZFP41 MEF2D ZNF610 VIM-AS1 TRDMT1 ENSG00000273153 ENSG00000234961
GH10G017237 1.5 FANTOM5 Ensembl ENCODE dbSUPER 17 -8.7 -8720 1.9 PKNOX1 AGO1 SIN3A ZNF121 GATA3 POLR2A ADNP KDM5B FOS ZNF600 VIM-AS1 TRDMT1 VIM GC10P017237 ST8SIA6-AS1
GH10G017212 2 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +14.0 14001 7.7 PKNOX1 FOXA2 ARNT SIN3A ZNF766 FOS ZNF263 SP3 JUNB REST VIM CUBN VIM-AS1 TRDMT1
GH10G016890 1.3 Ensembl ENCODE 11.8 +338.2 338230 1.8 PKNOX1 ATF1 ARNT TCF12 KDM4B JUNB GTF2B REST MEF2D MBD2 VIM ENSG00000234961 VIM-AS1 CUBN GC10P016843
GH10G017205 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.6 +23.5 23454 2.4 HDAC1 CBX3 ARNT FEZF1 CHAMP1 TCF12 GATA2 EGR1 CBX5 KLF7 TRDMT1 VIM ENSG00000234961 CUBN VIM-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for VIM-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000025091 85 5001 CREB3L1 FEZF1 ZNF143 ZNF263 SP3 TBX21 ZFP41 MEF2D ZNF610 ZNF585B

Genomic Location for VIM-AS1 Gene

Chromosome:
10
Start:
17,214,239 bp from pter
End:
17,229,985 bp from pter
Size:
15,747 bases
Orientation:
Minus strand

Genomic View for VIM-AS1 Gene

Genes around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains & Families for VIM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways & Interactions for VIM-AS1 Gene

SuperPathways for VIM-AS1 Gene

No Data Available

Interacting Proteins for VIM-AS1 Gene

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIM-AS1 Gene

Drugs & Compounds for VIM-AS1 Gene

No Compound Related Data Available

Transcripts for VIM-AS1 Gene

mRNA/cDNA for VIM-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VIM-AS1 Gene

VIM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1
ECgene alternative splicing isoforms for
VIM-AS1

Expression for VIM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.5) and Artery - Tibial (x4.1).

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene:

Hs.740502
genes like me logo Genes that share expression patterns with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIM-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs121917775 Pathogenic 17,229,873(+) TCTAC(A/G)AGGAG nc-transcript-variant, reference, missense
rs864309690 Likely pathogenic 17,229,437(+) AGGTC(-/C)GTGTC nc-transcript-variant, reference, frameshift-variant
rs1000052726 -- 17,228,351(+) AGGGG(A/C)GCTCT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000104769 -- 17,228,140(+) AAAAG(C/T)TGGGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000124528 -- 17,228,524(+) GGCGC(A/G)GTGAG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for VIM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2733617 CNV deletion 23290073
nsv1039697 CNV loss 25217958
nsv508571 CNV deletion 20534489
nsv831801 CNV gain 17160897

Relevant External Links for VIM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

Relevant External Links for VIM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VIM-AS1

No disorders were found for VIM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene

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