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Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3 5

External Ids for VIM-AS1 Gene

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

Regulatory Elements for VIM-AS1 Gene

Promoters for VIM-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VIM-AS1 Gene

Chromosome:
10
Start:
17,214,239 bp from pter
End:
17,229,985 bp from pter
Size:
15,747 bases
Orientation:
Minus strand

Genomic View for VIM-AS1 Gene

Genes around VIM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VIM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains & Families for VIM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways & Interactions for VIM-AS1 Gene

SuperPathways for VIM-AS1 Gene

No Data Available

Interacting Proteins for VIM-AS1 Gene

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VIM-AS1 Gene

Drugs & Compounds for VIM-AS1 Gene

No Compound Related Data Available

Transcripts for VIM-AS1 Gene

mRNA/cDNA for VIM-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VIM-AS1 Gene

VIM antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1
ECgene alternative splicing isoforms for
VIM-AS1

Expression for VIM-AS1 Gene

mRNA expression in normal human tissues for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.5) and Artery - Tibial (x4.1).

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene Hs.740502

genes like me logo Genes that share expression patterns with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Sequence variations from dbSNP and Humsavar for VIM-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs7081155 -- 17,221,141(+) ACTTA(C/T)AGTCT intron-variant
rs7902710 -- 17,224,471(+) tctct(A/C)tATAT intron-variant
rs7903137 -- 17,217,568(+) GTTAA(C/T)ACATA intron-variant
rs10752073 -- 17,222,487(+) CTCCT(C/T)TTCCT intron-variant
rs10752074 -- 17,222,698(+) GTACT(C/T)ATTCT intron-variant

Relevant External Links for VIM-AS1 Gene

HapMap Linkage Disequilibrium report
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

Relevant External Links for VIM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VIM-AS1

No disorders were found for VIM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene

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