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VILL Gene

protein-coding GIFtS: 49

GC03P038013

villin-like
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
OTTHUMP00000161384 ^²
villin-like ^²

Descriptions
villin-like protein ^²

External Ids
HGNC: 30906¹
Entrez Gene: 50853²
UniProtKB: O15195³
Ensembl: ENSG00000136059⁷

Search outside databases for aliases for VILL gene

Previous GC identifers: GC03P037339 GC03P037845 GC03P037997

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for VILL:

The protein encoded by this gene belongs to the villin/gelsolin family. It contains 6 gelsolin-like

repeats and a headpiece domain. It may play a role in actin-bundling. [provided by RefSeq]

UniProtKB/Swiss-Prot: VILL_HUMAN, O15195

Function: Possible tumor suppressor

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the VILL gene

Entrez Gene cytogenetic band: 3p21.3 Ensembl cytogenetic band: 3p22.2 HGNC cytogenetic band: 3p21

VILL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03P038013: (about GC identifiers)

Start:	38,004,554 bp from pter
End:	38,023,683 bp from pter
Size:	19,130 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000003.10 NT_022517.17

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: VILL_HUMAN, O15195 (See protein sequence)

Recommended Name: Villin-like protein

Size: 856 amino acids; 95907 Da

Secondary accessions: A8MZP1 Q9BT80 Q9BWH7

Alternative splicing: 2 isoforms: O15195-1 O15195-2

REFSEQ proteins: NP_056957.3

ENSEMBL proteins:

ENSP00000283713 ENSP00000373266 ENSP00000348579

Human Recombinant Proteins

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Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0015629	actin cytoskeleton	TAS	9179494

About this table

Antibodies for VILL:

	Browse Antibodies Central at Invitrogen
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	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Novus Biologicals Antibody for VILL

Assays for VILL:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry O15195

ProtoNet protein and cluster: O15195

4 Blocks protein families:

IPB001199 Cytochrome b5

IPB003128 Villin headpiece

IPB007122 Gelsolin family signature

IPB007123 Gelsolin region

UniProtKB/Swiss-Prot: VILL_HUMAN, O15195

Similarity: Belongs to the villin/gelsolin family

Similarity: Contains 6 gelsolin-like repeats

Similarity: Contains 1 HP (headpiece) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VILL)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_015873

Applied Biosystems Silencer® siRNAs for VILL

Sigma-Aldrich siRNA for VILL

Sigma-Aldrich shRNA for VILL

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_015873
Myc/DDK tagged cDNA clone in CMV expression vector: NM_015873
untagged cDNA clones in CMV expression vector (see all 3): BC004300

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_015873

UniProtKB/Swiss-Prot: VILL_HUMAN, O15195

Function: Possible tumor suppressor

Genatlas biochemistry entry for VILL:

Villin-like

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003779	actin binding	IEA	--
GO:0005200	structural constituent of cytoskeleton	TAS	9179494
GO:0005509	calcium ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007010	cytoskeleton organization	IEA	--
GO:0051016	barbed-end actin filament capping	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for VILL

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VILL)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_015873

Sigma-Aldrich siRNA for VILL

Sigma-Aldrich shRNA for VILL

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_015873

REFSEQ mRNAs for VILL gene:

NM_015873.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_015873

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015873
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_015873
                                 untagged cDNA clones in CMV expression vector (see all 3): BC004300

Additional cDNA sequence:

AK309304.1 BC000243.1 BC004300.1 CR591344.1 D88154.1

7 DOTS entries:

DT.308947 DT.95366465 DT.102823312 DT.91749545 DT.95310672 DT.95183565 DT.97839913

24/62 AceView cDNA sequences (see all 62 ):

AA641469 BE615005 AL551271 BC000243 BU689745 CF131450 BM714810 AA992660

CR591344 BC004300 CA433458 AL702875 BM818998 BM673528 BQ478235 AI887514

BU689742 BM837100 BM981806 BM906462 AL040451 AX810726 BU739711 BX382952

highest scoring ESTs for VILL:

D88154 AA088690 AA641469 AI004782 AI207789 AI394648 AI660044 AI699257 AI828390 AI887514

Unigene Cluster for VILL:

Villin-like

Hs.103665 [show with all ESTs]

Unigene Representative Sequence: BC004300

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for VILL (see all 6 )

ExUns:	1	^	2a	·	2b	^	3	^	4	^	5	^	6a	·	6b	^	7a	·	7b	^	8	^	9	^	10	^	11	^	12	^	13	^	14a	·	14b	^	15a	·	15b	^	16	^	17a	·	17b	^	18a	·	18b
SP1:																			-				-										-										-
SP2:
SP3:																			-
SP4:
SP5:

About this scheme

ECgene alternative splicing isoforms for VILL

3 Ensembl transcripts including schematic representations:

ENST00000283713 ENST00000383759 ENST00000356246

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

VILL expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for VILL

¹ / ² / ³

3 probe-sets matching VILL gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
37123_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	D88154	1.00	1.00	1.00	1
209950_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	BC004300	0.80	1.00	0.91	1
209950_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GCCACGTGGA

SOURCE GeneReport for Unigene cluster: Hs.103665
Expression variation in blood from EXPOLDB for VILL
UniProtKB/Swiss-Prot: VILL_HUMAN, O15195
Tissue specificity: Ubiquitously expressed in 16 tissues examined

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for VILL gene from 4 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	VILL¹	--	villin-like	80.83(n) 73.06(a)	485585 XM_542704.2 XP_542704.2
cow (Bos taurus)	LOC781105¹	--	similar to Villin-like protein	83.72(n) 75.64(a)	781105 XM_001249358.1 XP_001249359.1
rat (Rattus norvegicus)	Vill¹	--	villin-like	80.85(n) 73.86(a)	301057 XM_217296.4 XP_217296.4
mouse (Mus musculus)	Vill^{1, 5}	9⁵	villin-like^{1, 5}	78.95(n)¹ 71.34(a)¹	22351¹ NM_011700.1¹ NP_035830.1¹ AJ344341⁵ AK028229⁵ (see all 10)

About this table Species with no ortholog for VILL

ENSEMBL Gene Tree for VILL

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for VILL gene

FLII² SVIL²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/103 NCBI SNPs in VILL are shown (see all 103 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 57)

AB	SNP ID	Valid	Chr 3 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs9816693^1,2	A,C,F,H	38022958(+)	`AACTTG/CCGGCT`	1	F/L	mis¹ ese³		8		EU EA WA	832
	rs1892814^1,2	F,H	38020774(+)	`AGCTTC/GCAGCC`	1	F/L	mis¹ ese³		5		MN EU EA WA	582
--	rs6776766^1,2	A,C	38009825(+)	`CGGGAA/GGATCA`	1	--	ng5¹		0	--	--	--	--
--	rs6550513^1,2	C	38009009(+)	`AACAAC/GTACTT`	1	--	ng5¹		0	--	--	--	--
--	rs9872804^1,2	A	38008466(+)	`GAGGGC/TTTGGC`	1	--	ng5¹		0	--	--	--	--
	rs9843296^1,2	A,C,F,H	38018908(+)	`CACCAT/CGGAAA`	1	H/H	syn¹		5		EU EA WA NA	496
	rs6809649^1,2	A,C,F,H	38013986(+)	`CTGGCT/CTTGAC`	1	A/A	syn¹		5		EU EA WA NA	458
	rs11707277^1,2	C,F	38022684(+)	`CACCCG/ATCCCA`	1	P/P	syn¹ ese³		1		NA	78
	rs928807^1,2	A,C,F,H	38017186(+)	`GGTAAT/GTGCCA`	1	--	int¹		12		NA EA MN EU WA	1262
	rs6550514^1,2	A,C,F,H	38014191(+)	`TACCCC/TTGGGG`	1	--	int¹		4		EU EA WA	412

About this table

HapMap Linkage Disequilibrium images for VILL (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/13 PubMed articles for VILL gene (see all 13 ):

Sequence analysis of a 685-kb genomic region on chromosome 3p22-p21.3 that is homozygously deleted in a lung carcinoma cell line. (PubMed id 9179494)^{2, 3, 4} Ishikawa S.... Nakamura Y. (1997)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Predicting the effect of a point mutation on a protein fold: the villin and advillin headpieces and their Pro62Ala mutants. (PubMed id 18022635)³ Piana S....Martins J.C. (2008)
Frequent loss of Brm expression in gastric cancer correlates with histologic features and differentiation state. (PubMed id 18006815)³ Yamamichi N....Iba H. (2007)
Interaction of phospholipase C-gamma1 with villin regulates epithelial cell migration. (PubMed id 16921170)³ Tomar A....Khurana S. (2006)
The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)⁴ Muzny D.M....Gibbs R.A. (2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
The villin-like protein encoded by the Drosophila quail gene is required for actin bundle assembly during oogenesis. (PubMed id 8044841)¹ Mahajan-Miklos S. and Cooley L. (1994)
Villidin, a novel WD-repeat and villin-related protein from Dictyostelium, is associated with membranes and the cytoskeleton. (PubMed id 12857859)¹ Gloss A....Noegel A.A. (2003)
Drosophila fascin mutants are rescued by overexpression of the villin-like protein, quail. (PubMed id 9405306)¹ Cant K....Cooley L. (1998)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 50853	HGNC: 30906	AceView: VILL	Ensembl:ENSG00000136059	euGenes: HUgn50853
ECgene: VILL	H-InvDB: VILL

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for VILL
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for VILL:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for VILL-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for VILL		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for VILL		Browse small molecules at Sigma-Aldrich
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Antibodies for VILL

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VILL Gene

protein-coding GIFtS: 49

Aliases &
Descriptions
for VILL

Summaries
for VILL

Genomic Location
for VILL

Proteins
for VILL

Protein Domains/
Families
for VILL

Gene Function
for VILL

Pathways & Interactions
for VILL

Drugs & Compounds
for VILL

Transcripts
for VILL

Expression
for VILL

Orthologs
for VILL

Paralogs
for VILL

SNPs/Variants
for VILL

Disorders & Mutations
for VILL

Medical News
for VILL

Publications
for VILL

Search for VILL

Genome Databases showing VILL

Other Databases showing VILL

Specialized Databases showing VILL

Licensable Technologies
for VILL

Services
for VILL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

VILL Gene

protein-coding GIFtS: 49

Aliases & Descriptionsfor VILL

Summariesfor VILL

Genomic Locationfor VILL

Proteinsfor VILL

Protein Domains/Familiesfor VILL

Gene Functionfor VILL

Pathways & Interactionsfor VILL

Drugs & Compoundsfor VILL

Transcriptsfor VILL

Expression for VILL

Orthologsfor VILL

Paralogsfor VILL

SNPs/Variantsfor VILL

Disorders & Mutationsfor VILL

Medical Newsfor VILL

Publicationsfor VILL

Search for VILL

Genome Databases showing VILL

Other Databases showing VILL

Specialized Databases showing VILL

Licensable Technologiesfor VILL

Servicesfor VILL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for VILL

Summaries
for VILL

Genomic Location
for VILL

Proteins
for VILL

Protein Domains/
Families
for VILL

Gene Function
for VILL

Pathways & Interactions
for VILL

Drugs & Compounds
for VILL

Transcripts
for VILL

Expression
for VILL

Orthologs
for VILL

Paralogs
for VILL

SNPs/Variants
for VILL

Disorders & Mutations
for VILL

Medical News
for VILL

Publications
for VILL

Licensable Technologies
for VILL

Services
for VILL