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VGLL3 Gene

protein-coding GIFtS: 49

GC03M087071

vestigial like 3 (Drosophila)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
DKFZp686O1845 ^²
FLJ38507 ^²
VGL-3 ^¹, ²
VGL3 ^², ⁵
Vgl-3 ^³

Descriptions
colon carcinoma related protein ^²
vestigial like 3 (Drosophila) ^²
vestigial-like 3 ^²

External Ids
HGNC: 24327¹
Entrez Gene: 389136²
UniProtKB: A8MV65³
Ensembl: ENSG00000206538⁷

Search outside databases for aliases for VGLL3 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: VGLL3_HUMAN, A8MV65

Function: May act as a specific coactivator for the mammalian TEFs (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the VGLL3 gene

Entrez Gene cytogenetic band: 3p12.1 Ensembl cytogenetic band: 3p12.1 HGNC cytogenetic band: 3p12.1

VGLL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M087071: (about GC identifiers)

Start:	87,069,813 bp from pter
End:	87,122,947 bp from pter
Size:	53,135 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000003.10 NT_022459.14

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: VGLL3_HUMAN, A8MV65 (See protein sequence)

Recommended Name: Transcription cofactor vestigial-like protein 3

Size: 326 amino acids; 36009 Da

Subcellular location: Nucleus (By similarity)

Secondary accessions: Q504T7

Alternative splicing: 2 isoforms: A8MV65-1 A8MV65-2

REFSEQ proteins: NP_057290.2

ENSEMBL proteins:

ENSP00000381436 ENSP00000373199

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (VGLL3)
	Human Recombinant Proteins from Abnova (VGLL3)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

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Antibodies for VGLL3:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (VGLL3), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (VGLL3)
	Novus Biologicals Antibodies for VGLL3

Assays for VGLL3:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry A8MV65

ProtoNet protein and cluster: A8MV65

UniProtKB/Swiss-Prot: VGLL3_HUMAN, A8MV65

Similarity: Belongs to the vestigial family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VGLL3)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016206

Applied Biosystems Silencer® siRNAs for VGLL3

Sigma-Aldrich siRNA for VGLL3

Sigma-Aldrich shRNA for VGLL3

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for VGLL3
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_016206
Myc/DDK tagged cDNA clone in CMV expression vector: NM_016206
untagged cDNA clones in CMV expression vector (see all 2): NM_016206

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_016206

UniProtKB/Swiss-Prot: VGLL3_HUMAN, A8MV65

Function: May act as a specific coactivator for the mammalian TEFs (By similarity)

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0030528	transcription regulator activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Interacting protein for VGLL3 (ENSP00000373199³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TEAD1	ENSP00000334754³	STRING (score=.883)

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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006355	regulation of transcription, DNA-dependent	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for VGLL3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VGLL3)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016206

Sigma-Aldrich siRNA for VGLL3

Sigma-Aldrich shRNA for VGLL3

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_016206

REFSEQ mRNAs for VGLL3 gene:

NM_016206.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_016206

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016206
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_016206
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_016206

Additional cDNA sequence:

AF099505.1 AK095826.1 BC017383.1 BC062478.1 BC094780.1 CR600157.1 CR605157.1 CR936700.1

CR936712.1

8 DOTS entries:

DT.116514 DT.91728554 DT.431947 DT.95159509 DT.91698637 DT.91750179 DT.120912721 DT.91828388

24/135 AceView cDNA sequences (see all 135 ):

CA448176 H12878 BC062478 BF438851 BX107192 AI754423 BC017383 BF109698

AI827242 AA331532 BX324361 AA382459 AI472828 BQ716748 AA419546 AI762215

D79815 AI753095 BU752050 AI635277 CB267646 BX116348 BQ716683 BG571471

highest scoring ESTs for VGLL3:

AA031790 AI123415 AA031657 AA382460 AA417640 AA419546 AA599530 AF099505 AI005399 AI016191

Unigene Cluster for VGLL3:

Vestigial like 3 (Drosophila)

Hs.435013 [show with all ESTs]

Unigene Representative Sequence: NM_016206

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000398399 ENST00000383698

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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VGLL3 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for VGLL3

¹ / ² / ³

10 probe-sets matching VGLL3 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
87107_at²^{, 3}	U95-D	1	1.00	1.00	0.50	0.60	AI379920	0.60	1.00	0.82	1
44656_r_at²^{, 3}	U95-B	1	1.00	1.00	0.96	1.16	AA031790	0.80	1.00	0.91	1
44655_i_at²^{, 3}	U95-B	1	1.00	1.00	0.95	1.16	AA031790	0.80	1.00	0.91	1
73987_at²^{, 3}	U95-E	1	1.00	1.00	0.60	1.09	AI741577	0.40	1.00	0.76	1
50887_at²^{, 3}	U95-C	1	1.00	1.00	0.78	1.09	AI123415	0.80	1.00	0.91	1
83007_at²^{, 3}	U95-D	1	0.88	1.00	0.76	0.97	AI472828	0.60	1.00	0.82	1
227399_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AI754423	0.40	1.00	0.76	1
220327_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_016206	0.60	1.00	0.82	1
227399_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
220327_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks VGLL3 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: CTATGTGCCA

SOURCE GeneReport for Unigene cluster: Hs.435013
UniProtKB/Swiss-Prot: VGLL3_HUMAN, A8MV65
Tissue specificity: Enriched in placenta

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for VGLL3 gene from 5/7 species (see all 7 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	VGLL3¹	--	vestigial like 3 (Drosophila)	91.85(n) 90.88(a)	607015 XM_843537.1 XP_848630.1
chimpanzee (Pan troglodytes)	VGLL3¹	--	vestigial like 3 (Drosophila)	99.49(n) 100(a)	460524 XM_001134745.1 XP_001134745.1
cow (Bos taurus)	VGLL3¹	--	vestigial like 3 (Drosophila)	89.67(n) 88.96(a)	781333 XM_001249734.1 XP_001249735.1
rat (Rattus norvegicus)	Vgll3¹	--	vestigial like 3 (Drosophila)	91.15(n) 90.12(a)	498038 XM_573239.2 XP_573239.2
mouse (Mus musculus)	Vgll3^{1, 5}	16⁵	vestigial like 3 (Drosophila)^{1, 5}	90.09(n)¹ 90.09(a)¹	73569¹ XM_283372.6¹ XP_283372.5¹ AA172584⁵ AK007165⁵ (see all 12)

About this table Species with no ortholog for VGLL3

ENSEMBL Gene Tree for VGLL3

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for VGLL3 gene

VGLL1² VGLL2²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/288 NCBI SNPs in VGLL3 are shown (see all 288 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 84)

AB	SNP ID	Valid	Chr 3 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs2028088^1,2	A,C,F,H,O	87069473(-)	`TGGCAG/ATGTGG`	1	--	ng5¹		13	MN EU EA WA NA	1230
	rs1436639^1,2	A,C,F,H	87077814(-)	`GAAGGT/GCATTT`	1	--	ut3¹		8	MN NA EU EA WA	744
	rs2232716^1,2	C,F,H,O	87070906(-)	`AGTTAT/CTATAG`	1	--	ut3¹		15	EU EA WA NA	1400
	rs13356^1,2	A,C,F,H	87072769(-)	`ACAAGC/AAGTTG`	1	--	ut3¹		13	MN EU EA WA NA	1352
	rs6788631^1,2	A,C,F,H	87072711(+)	`AAATGA/GCAGCA`	1	--	ut3¹		8	EU EA WA	840
	rs13074432^1,2	A,C,F,H	87072024(+)	`CCCACG/TTAGAG`	1	--	ut3¹		19	EU EA WA NA	1762
	rs9863011^1,2	A,C,F,H	87069510(+)	`GAGTTC/TACCCT`	1	--	ng5¹		12	EA NA EU WA	1050
	rs6789975^1,2	A,C,F,H	87074912(+)	`ATTATC/TCCATT`	1	--	ut3¹		8	EA NA EU WA	628
--	rs9834197^1,2	A,C,F	87074574(+)	`TGACAC/TACTAA`	1	--	ut3¹		3	NA	142
	rs13324964^1,2	C,F,H	87077996(+)	`AGAGAA/GTTAGT`	1	--	ut3¹		4	EU EA WA	420

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HapMap Linkage Disequilibrium images for VGLL3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 609980

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

7 PubMed articles for VGLL3 gene:

Mammalian vestigial-like 2, a cofactor of TEF-1 and MEF2 transcription factors that promotes skeletal muscle differentiation. (PubMed id 12376544)^{1, 2, 3, 4} Maeda T.... Stewart A.F. (2002)
The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)⁴ Muzny D.M....Gibbs R.A. (2006)
Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)³ Brandenberger R.... Stanton L.W. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Comparison of gene expression between normal colon mucosa and colon carcinoma by means of messenger RNA differential display. (PubMed id 11819507)³ Wang L....Gu J.R. (1999)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 389136	HGNC: 24327	AceView: FLJ38507	Ensembl:ENSG00000206538	euGenes: HUgn389136
ECgene: VGLL3	H-InvDB: VGLL3

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for VGLL3
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for VGLL3:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for VGLL3-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for VGLL3		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for VGLL3		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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Search OriGene for VGLL3

Search Tocris compounds for VGLL3

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Antibodies for VGLL3

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VGLL3 Gene

protein-coding GIFtS: 49

Aliases &
Descriptions
for VGLL3

Summaries
for VGLL3

Genomic Location
for VGLL3

Proteins
for VGLL3

Protein Domains/
Families
for VGLL3

Gene Function
for VGLL3

Pathways & Interactions
for VGLL3

Drugs & Compounds
for VGLL3

Transcripts
for VGLL3

Expression
for VGLL3

Orthologs
for VGLL3

Paralogs
for VGLL3

SNPs/Variants
for VGLL3

Disorders & Mutations
for VGLL3

Medical News
for VGLL3

Publications
for VGLL3

Search for VGLL3

Genome Databases showing VGLL3

Other Databases showing VGLL3

Specialized Databases showing VGLL3

Licensable Technologies
for VGLL3

Services
for VGLL3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

VGLL3 Gene

protein-coding GIFtS: 49

Aliases & Descriptionsfor VGLL3

Summariesfor VGLL3

Genomic Locationfor VGLL3

Proteinsfor VGLL3

Protein Domains/Familiesfor VGLL3

Gene Functionfor VGLL3

Pathways & Interactionsfor VGLL3

Drugs & Compoundsfor VGLL3

Transcriptsfor VGLL3

Expression for VGLL3

Orthologsfor VGLL3

Paralogsfor VGLL3

SNPs/Variantsfor VGLL3

Disorders & Mutationsfor VGLL3

Medical Newsfor VGLL3

Publicationsfor VGLL3

Search for VGLL3

Genome Databases showing VGLL3

Other Databases showing VGLL3

Specialized Databases showing VGLL3

Licensable Technologiesfor VGLL3

Servicesfor VGLL3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for VGLL3

Summaries
for VGLL3

Genomic Location
for VGLL3

Proteins
for VGLL3

Protein Domains/
Families
for VGLL3

Gene Function
for VGLL3

Pathways & Interactions
for VGLL3

Drugs & Compounds
for VGLL3

Transcripts
for VGLL3

Expression
for VGLL3

Orthologs
for VGLL3

Paralogs
for VGLL3

SNPs/Variants
for VGLL3

Disorders & Mutations
for VGLL3

Medical News
for VGLL3

Publications
for VGLL3

Licensable Technologies
for VGLL3

Services
for VGLL3