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VGLL1 Gene

protein-coding GIFtS: 53

GC0XP135441

vestigial like 1 (Drosophila)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
OTTHUMP00000024123 ^²
TDU ^¹, ², ³, ⁵
TONDU ^¹, ²
VGL1 ^², ⁵
Vgl-1 ^³
WUGSC:H_GS188P18.1b ^²

Descriptions
Protein TONDU ^³
vestigial like 1 ^²
vestigial like 1 (Drosophila) ^²

External Ids
HGNC: 20985¹
Entrez Gene: 51442²
UniProtKB: Q99990³
Ensembl: ENSG00000102243⁷

Search outside databases for aliases for VGLL1 gene

Previous GC identifers: GC0XP133559 GC0XP134319 GC0XP135339

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: VGLL1_HUMAN, Q99990

Function: May act as a specific coactivator for the mammalian TEFs

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the VGLL1 gene

Entrez Gene cytogenetic band: Xq26.3 Ensembl cytogenetic band: Xq26.3 HGNC cytogenetic band: Xq26.3

VGLL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP135441: (about GC identifiers)

Start:	135,441,977 bp from pter
End:	135,466,629 bp from pter
Size:	24,653 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: VGLL1_HUMAN, Q99990 (See protein sequence)

Recommended Name: Transcription cofactor vestigial-like protein 1

Size: 258 amino acids; 28707 Da

Subunit: Interacts with TEFs

Subcellular location: Nucleus

REFSEQ proteins: NP_057351.1

ENSEMBL proteins:

ENSP00000359668

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (VGLL1)
	Human Recombinant Proteins from Abnova (VGLL1)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	NAS	10518497

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Antibodies for VGLL1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for VGLL1
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (VGLL1), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (VGLL1)
	Novus Biologicals Antibodies for VGLL1

Assays for VGLL1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q99990

ProtoNet protein and cluster: Q99990

1 Blocks protein family: IPB011520 Vestigial/tondu

UniProtKB/Swiss-Prot: VGLL1_HUMAN, Q99990

Similarity: Belongs to the vestigial family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VGLL1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (VGLL1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016267

Applied Biosystems Silencer® siRNAs for VGLL1

Sigma-Aldrich siRNA for VGLL1

Sigma-Aldrich shRNA for VGLL1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for VGLL1
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_016267
Myc/DDK tagged cDNA clone in CMV expression vector: NM_016267
untagged cDNA clone in CMV expression vector: NM_016267

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_016267

UniProtKB/Swiss-Prot: VGLL1_HUMAN, Q99990

Function: May act as a specific coactivator for the mammalian TEFs

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003713	transcription coactivator activity	TAS	10518497
GO:0030528	transcription regulator activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for VGLL1

3 Interacting proteins for VGLL1 (ENSP00000359668³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TEAD1	ENSP00000334754³	STRING (score=.996)
TEAD4	ENSP00000352926³	STRING (score=.936)
YAP1	ENSP00000282441³	STRING (score=.828)

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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006355	regulation of transcription, DNA-dependent	NAS	10518497

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for VGLL1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (VGLL1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (VGLL1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016267

Sigma-Aldrich siRNA for VGLL1

Sigma-Aldrich shRNA for VGLL1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_016267

REFSEQ mRNAs for VGLL1 gene:

NM_016267.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_016267

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016267
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_016267
                                 untagged cDNA clone in CMV expression vector: NM_016267

Additional cDNA sequence:

AF137387.1 AK309912.1 BC000045.1 BC003362.1 CR590059.1 CR595192.1 CR602014.1 CR607030.1

CR608272.1 CR608710.1 CR609159.1 CR610361.1 CR611631.1 CR612495.1 CR614664.1 CR619873.1

CR625530.1

4 DOTS entries:

DT.451550 DT.86802990 DT.97840907 DT.40107609

24/142 AceView cDNA sequences (see all 142 ):

CR614664 AL544599 BM844553 CR610361 CR612495 AI871871 CA311702 CR611631

AL551760 BE535201 BI087731 BE731137 NM_016267 BC003362 CR608272 AI142461

CR602014 AI142456 CR625530 CR590059 CR609159 BC000045 CR595192 AI383337

highest scoring ESTs for VGLL1:

AA505326 AA524341 AA614529 AA642211 AA700322 AA707147 AF137387 AI091425 AI142456 AI142461

Unigene Cluster for VGLL1:

Vestigial like 1 (Drosophila)

Hs.496843 [show with all ESTs]

Unigene Representative Sequence: NM_016267

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for VGLL1

ExUns:	1	^	2a	·	2b	^	3a	·	3b	^	4a	·	4b	^	5a	·	5b	·	5c
SP1:											-
SP2:									-		-
SP3:

About this scheme

ECgene alternative splicing isoforms for VGLL1

1 Ensembl transcript including schematic representation:

ENST00000370634

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

VGLL1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for VGLL1

¹ / ² / ³

5 probe-sets matching VGLL1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
38249_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	Z97632	0.20	0.33	0.27	1
215729_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	BE542323	0.60	1.00	0.82	1
205487_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_016267	0.60	1.00	0.82	1
215729_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
205487_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GCTGTGAATC

SOURCE GeneReport for Unigene cluster: Hs.496843
Expression variation in blood from EXPOLDB for VGLL1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for VGLL1 gene from 5/6 species (see all 6 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	VGLL1¹	--	vestigial like 1 (Drosophila)	79.78(n) 63.03(a)	492164 XM_549284.2 XP_549284.2
chimpanzee (Pan troglodytes)	VGLL1¹	--	vestigial like 1 (Drosophila)	97.6(n) 97.03(a)	739277 XM_001140554.1 XP_001140554.1
cow (Bos taurus)	VGLL1¹	--	vestigial like 1 (Drosophila)	81.5(n) 67.94(a)	613549 XM_864293.2 XP_869386.1
rat (Rattus norvegicus)	Vgll1¹	--	vestigial like 1 (Drosophila)	71.93(n) 54.82(a)	363508 XM_343832.3 XP_343833.3
mouse (Mus musculus)	Vgll1^{1, 5}	X⁵	vestigial like 1 homolog (Drosophila)^{1, 5}	71.93(n)¹ 53.51(a)¹	170828¹ NM_133251.1¹ NP_573514.1¹ AB036708⁵ AK146118⁵ (see all 8)

About this table Species with no ortholog for VGLL1

ENSEMBL Gene Tree for VGLL1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for VGLL1 gene

VGLL3² VGLL2²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/64 NCBI SNPs in VGLL1 are shown (see all 64 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 34)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs2071911^1,2	A,C,F,H	135466636(-)	`aacccG/Agcata`	1	--	ng3¹		4	EU EA WA	416
	rs9119^1,2	C,F,H	135466489(+)	`AGCTTC/TGTGTC`	1	--	ut3¹ ese³		8	MN NA EU EA WA	720
	rs3027855^1,2	F,H	135442058(+)	`GAAGTG/AAGCCA`	1	--	ut5¹		4	EU EA WA	416
	rs3027860^1,2	C,H	135446021(+)	`ATTGAC/TCCCCT`	1	T/I	mis¹ ese³		5	EU EA WA NA	494
	rs3027868^1,2	H	135466358(+)	`CAGCAT/ACTTTA`	1	Q/H	mis¹ ese³		4	EU EA WA	416
	rs3027859^1,2	A,C,F,H,O	135445890(+)	`GGCAAA/GCAGAA`	1	K/K	syn¹ ese³		12	EU EA WA NA	926
	rs3027867^1,2	A,C,F,H,O	135459638(+)	`GCAAGA/CTTTGC`	1	--	int¹		14	EU EA WA NA	1125
	rs2285180^1,2	A,C,F,H	135448710(-)	`AGCTCT/CACATC`	1	--	int¹		7	EU EA WA NA	556
	rs5975745^1,2	A,C,F,H	135446711(+)	`GCACTG/ATATCT`	1	--	int¹		4	EU EA WA	418
	rs3027861^1,2	A,C,F,H	135446205(+)	`CCTTCT/CTAGAA`	1	--	int¹		4	EU EA WA	418

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HapMap Linkage Disequilibrium images for VGLL1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300583

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

8 PubMed articles for VGLL1 gene:

TONDU (TDU), a novel human protein related to the product of vestigial (vg) gene of Drosophila melanogaster interacts with vertebrate TEF factors and substitutes for Vg function in wing formation. (PubMed id 10518497)^{1, 2, 3, 4} Vaudin P.... Zider A. (1999)
The DNA sequence of the human X chromosome. (PubMed id 15772651)^{3, 4} Ross M.T.... Bentley D.R. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Mammalian vestigial-like 2, a cofactor of TEF-1 and MEF2 transcription factors that promotes skeletal muscle differentiation. (PubMed id 12376544)¹ Maeda T.... Stewart A.F. (2002)
The transcriptional co-activator TAZ interacts differentially with transcriptional enhancer factor-1 (TEF-1) family members. (PubMed id 15628970)¹ Mahoney W.M....Farrance I.K. (2005)
VITO-1, a novel vestigial related protein is predominantly expressed in the skeletal muscle lineage. (PubMed id 14516696)¹ Mielcarek M....Braun T. (2002)
VITO-1, a novel vestigial related protein is predominantly expressed in the skeletal muscle lineage. (PubMed id 12617818)¹ Mielcarek M.... Braun T. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 51442	HGNC: 20985	AceView: VGLL1	Ensembl:ENSG00000102243	euGenes: HUgn51442
ECgene: VGLL1	H-InvDB: VGLL1

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for VGLL1
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for VGLL1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for VGLL1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for VGLL1		Antibodies for VGLL1
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for VGLL1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (VGLL1)
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VGLL1 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for VGLL1

Summaries
for VGLL1

Genomic Location
for VGLL1

Proteins
for VGLL1

Protein Domains/
Families
for VGLL1

Gene Function
for VGLL1

Pathways & Interactions
for VGLL1

Drugs & Compounds
for VGLL1

Transcripts
for VGLL1

Expression
for VGLL1

Orthologs
for VGLL1

Paralogs
for VGLL1

SNPs/Variants
for VGLL1

Disorders & Mutations
for VGLL1

Medical News
for VGLL1

Publications
for VGLL1

Search for VGLL1

Genome Databases showing VGLL1

Other Databases showing VGLL1

Specialized Databases showing VGLL1

Licensable Technologies
for VGLL1

Services
for VGLL1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

VGLL1 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor VGLL1

Summariesfor VGLL1

Genomic Locationfor VGLL1

Proteinsfor VGLL1

Protein Domains/Familiesfor VGLL1

Gene Functionfor VGLL1

Pathways & Interactionsfor VGLL1

Drugs & Compoundsfor VGLL1

Transcriptsfor VGLL1

Expression for VGLL1

Orthologsfor VGLL1

Paralogsfor VGLL1

SNPs/Variantsfor VGLL1

Disorders & Mutationsfor VGLL1

Medical Newsfor VGLL1

Publicationsfor VGLL1

Search for VGLL1

Genome Databases showing VGLL1

Other Databases showing VGLL1

Specialized Databases showing VGLL1

Licensable Technologiesfor VGLL1

Servicesfor VGLL1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for VGLL1

Summaries
for VGLL1

Genomic Location
for VGLL1

Proteins
for VGLL1

Protein Domains/
Families
for VGLL1

Gene Function
for VGLL1

Pathways & Interactions
for VGLL1

Drugs & Compounds
for VGLL1

Transcripts
for VGLL1

Expression
for VGLL1

Orthologs
for VGLL1

Paralogs
for VGLL1

SNPs/Variants
for VGLL1

Disorders & Mutations
for VGLL1

Medical News
for VGLL1

Publications
for VGLL1

Licensable Technologies
for VGLL1

Services
for VGLL1