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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

VEZF1 Gene

protein-coding   GIFtS: 45
GCID: GC17M056048

vascular endothelial zinc finger 1

(Previous name: zinc finger protein 161 )
(Previous symbol: ZNF161)
 Explore 2 diseases affiliated with
VEZF1 via our new
 Human Malady Compendium 
Biological research products
for VEZF1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Vascular Endothelial Zinc Finger 11 2
ZNF1611 2 3 5
Zinc Finger Protein 1611 2 3
DB11 2 3
Putative Transcription Factor DB12 3

External Ids:    HGNC: 129491   Entrez Gene: 77162   Ensembl: ENSG000001364517   OMIM: 6067475   UniProtKB: Q141193   

Export aliases for VEZF1 gene to outside databases

Previous GC identifers: GC17M053403 GC17M051410


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for VEZF1:
Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both
normal and abnormal cellular proliferation and differentiation. ZNF161 is a C2H2-type zinc finger protein
(Koyano-Nakagawa et al., 1994 (PubMed 8035792)). See MIM 603971 for general information on zinc finger
proteins.(supplied by OMIM, Sep 2008)

UniProtKB/Swiss-Prot: VEZF1_HUMAN, Q14119
Function: Possible transcription factor. Specifically binds to the CT/GC-rich region of the interleukin-3 promoter and
mediates tax transactivation of IL-3




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.1  NT_010783.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the VEZF1 gene promoter:
         NRSF form 1   AP-2gamma   Evi-1   AREB6   POU2F1   AP-2beta   AP-2alpha   MRF-2   Ik-1   AP-2alphaA   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidVEZF1 promoter sequence
   Search SABiosciences Chromatin IP Primers for VEZF1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VEZF1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q22   Ensembl cytogenetic band:  17q22   HGNC cytogenetic band: 17q22

VEZF1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
VEZF1 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M056048:  view genomic region     (about GC identifiers)

Start:
56,048,910 bp from pter      End:
56,065,620 bp from pter
Size:
16,711 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: VEZF1_HUMAN, Q14119 (See protein sequence)
Recommended Name: Vascular endothelial zinc finger 1  
Size: 521 amino acids; 56931 Da
Subunit: Interacts with ARHGAP22 (By similarity)
Subcellular location: Nucleus

Explore the universe of human proteins at neXtProt for VEZF1: NX_Q14119

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q14119

  • VEZF1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_009077.2  
    ENSEMBL proteins: 
     ENSP00000258963   ENSP00000464687   ENSP00000462337   ENSP00000463631  

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    Uscn Proteins for VEZF1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--


    VEZF1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    VEZF1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q14119

    ProtoNet protein and cluster: Q14119

    1 Blocks protein family: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: VEZF1_HUMAN, Q14119
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 6 C2H2-type zinc fingers


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: VEZF1_HUMAN, Q14119
    Function: Possible transcription factor. Specifically binds to the CT/GC-rich region of the interleukin-3 promoter and
    mediates tax transactivation of IL-3

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    8/79 QIAGEN miScript miRNA Assays for microRNAs that regulate VEZF1 (see all 79):
    hsa-miR-323-3p hsa-miR-140-5p hsa-miR-100* hsa-miR-361-5p hsa-miR-300 hsa-miR-3074-3p hsa-miR-376c hsa-miR-200b
    SwitchGear 3'UTR luciferase reporter plasmidVEZF1 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0008270zinc ion binding IEA--


    VEZF1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for VEZF1:
     G0/1 arrest  Increased G1 DNA content 

    Animal Models:
         Mouse knock-out Vezf1tm1Stmn for VEZF1
         6 MGI mutant phenotypes (inferred from 1 allele(MGI details for Vezf1):
     cardiovascular system  craniofacial  embryogenesis  growth/size  immune system 
     mortality/aging 

    VEZF1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VEZF1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for VEZF1 (ENSP000002589634) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001525angiogenesis IEA--
    GO:0001885endothelial cell development IEA--
    GO:0006357regulation of transcription from RNA polymerase II promoter TAS8035792
    GO:0006366transcription from RNA polymerase II promoter TAS8035792
    GO:0006968cellular defense response TAS8035792


    VEZF1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for VEZF1
    Search CenterWatch for drugs/clinical trials and news about VEZF1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for VEZF1 gene: 
    NM_007146.2  

    Unigene Cluster for VEZF1:

    Vascular endothelial zinc finger 1
    Hs.463569  [show with all ESTs]
    Unigene Representative Sequence: NM_007146
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000258963(uc002ivf.1) ENST00000584396 ENST00000581208(uc010dcn.1)
    ENST00000583932

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    8/79 QIAGEN miScript miRNA Assays for microRNAs that regulate VEZF1 (see all 79):
    hsa-miR-323-3p hsa-miR-140-5p hsa-miR-100* hsa-miR-361-5p hsa-miR-300 hsa-miR-3074-3p hsa-miR-376c hsa-miR-200b
    SwitchGear 3'UTR luciferase reporter plasmidVEZF1 3' UTR sequence
    Inhib. RNA
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    Additional cDNA sequence: 

    AB593183.1 AK058024.1 BX648862.1 D28118.1 

    11 DOTS entries:

    DT.100793587  DT.92431525  DT.95188994  DT.100793576  DT.100793579  DT.120850471  DT.120937961  DT.75188496 
    DT.92431527  DT.99936620  DT.40294655 

    24/298 AceView cDNA sequences (see all 298):

    BM676135 AW183892 BM977996 T92348 AA227945 AI208612 CB305814 AA973711 
    BG149947 AA731648 BM873386 F36220 AW079327 AI202735 H87224 BU620853 
    BI966844 AI191493 CB529650 AI073705 BF590384 AI090020 AI052492 BI769650 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    VEZF1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See VEZF1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for VEZF1

    SOURCE GeneReport for Unigene cluster: Hs.463569

    UniProtKB/Swiss-Prot: VEZF1_HUMAN, Q14119
    Tissue specificity: Ubiquitously expressed. Highest levels in skeletal muscle and kidney

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for VEZF1 gene from 4/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves VEZF11 vascular endothelial zinc finger 1 86.76(n)
    95.2(a)
      417664  NM_001037827.1  NP_001032916.1 
    lizard
    (Anolis carolinensis)
    Reptilia VEZF16
    --
    --
    94(a)
    72(a)
    1 ↔ 1
    possible ortholog
    AAWZ02037237(9009-13283)
    AAWZ02037404(2979-9818)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.299712 Xenopus laevis transcribed sequence with moderate similarity more 78.7(n)    CF289079.1 
    zebrafish
    (Danio rerio)
    Actinopterygii vezf1b1 vascular endothelial zinc finger 1b 67.74(n)
    71.56(a)
      556915  NM_001079963.1  NP_001073432.1 


    ENSEMBL Gene Tree for VEZF1 (if available)
    TreeFam Gene Tree for VEZF1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for VEZF1 gene
    MAZ2  PATZ12  
    18/56 SIMAP similar genes for VEZF1 using alignment to 4 protein entries:     VEZF1_HUMAN (see all proteins) (see all similar genes):
    A-328A3.4    MAZ    DKFZp686N0199    ZNF219    KLF1    KLF7
    ZNF55    ZNF78L1    KLF13    ZNF516    ZNF263    GZF1
    ZNF    kr-znf3    ZNF138    DKFZp434J0650    DKFZp313M0722    DKFZp686O1631

    VEZF1 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for VEZF1
    PGOHUM00000237903


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/296 NCBI SNPs in VEZF1 are shown (see all 296    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs72085121,2
    C,F,H,--56048501(+) CTAATA/GGTGCG 1 -- ds50016Minor allele frequency- G:0.05NS EA CSA WA 538
    rs1842180581,2
    --56048512(+) TGGCAA/CATTGT 1 -- ds50010--------
    rs1418030291,2
    --56048570(+) AGGGAA/CCCAGC 1 -- ds50010--------
    rs177624341,2
    C,F,H,--56048642(+) CATCTT/GCTCTT 1 -- ds500115Minor allele frequency- G:0.05NA NS EA 1628
    rs1505582831,2
    --56048690(+) TCCATC/GCTAGC 1 -- ds50010--------
    rs80672621,2
    C,F,H,--56048720(+) CTGCTT/GGGGAG 1 -- ds50016Minor allele frequency- G:0.06NS EA WA NA 654
    rs116571281,2
    C,F,H,--56048840(+) AGAAAG/ATACTT 1 -- ds500114Minor allele frequency- A:0.08NS EA NA WA 1890
    rs1867672021,2
    --56049075(+) CAAACA/GCAGGC 1 -- ut310--------
    rs1925226491,2
    --56049173(+) GGAAGC/TTCTCA 1 -- ut310--------
    rs1171416611,2
    F,--56049381(+) CTCCCT/CCCCAA 1 -- ut311Minor allele frequency- C:0.02EA 120

    HapMap Linkage Disequilibrium report for VEZF1 (56048910 - 56065620 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for VEZF1: --

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    VEZF1 for disorders           About GeneDecksing

    OMIM gene information: 606747    OMIM disorders: --

    2 diseases for VEZF1:    About MalaCards
    lymphangioma    cystic lymphangioma


    Export disorders for VEZF1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for VEZF1 gene, integrated from 9 sources (see all 13):
    (articles sorted by number of sources associating them with VEZF1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a novel human cDNA encoding a zinc finger protein that binds to the interleukin-3 promoter. (PubMed id 8035792)1, 2, 3, 9 Koyano-Nakagawa N.... Yokota T. (1994)
    2. Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II. (PubMed id 22308494)1 Gowher H....Felsenfeld G. (2012)
    3. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    4. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    5. Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861)2 Choudhary C.... Mann M. (2009)
    6. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    7. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    8. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)2 Zody M.C.... Nusbaum C. (2006)
    9. Characterization of Mesenchyme Homeobox 2 (MEOX2) transcription factor binding to RING finger protein 10. (PubMed id 16335786)1 Lin J.... Wigle J.T. (2005)
    10. Vezf1/DB1 is an endothelial cell-specific transcription factor that regulates expression of the endothelin-1 promoter. (PubMed id 11504723)1 Aitsebaomo J....Patterson C. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    NCBI Bookshelf
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7716 HGNC: 12949 AceView: ZNF161 Ensembl:ENSG00000136451 euGenes: HUgn7716
    ECgene: VEZF1 H-InvDB: VEZF1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for VEZF1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for VEZF1 gene:
    Search GeneIP for patents involving VEZF1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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    von Willebrand factor
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