Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VENTXP2 Gene

Subcategory (RNA class) for VENTXP2 Gene

lncRNA

Aliases for VENTXP2 Gene

  • VENT Homeobox Pseudogene 2 2 3 5
  • VENT Homeobox (Xenopus Laevis) Pseudogene 2 2

External Ids for VENTXP2 Gene

ORGUL Members for VENTXP2 Gene

Previous GeneCards Identifiers for VENTXP2 Gene

  • GC13P083380
  • GC13P084481
  • GC13M084483

Summaries for VENTXP2 Gene

Entrez Gene Summary for VENTXP2 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the VENT homeobox gene family [provided by RefSeq, Mar 2013]

GeneCards Summary for VENTXP2 Gene

VENTXP2 (VENT Homeobox Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for VENTXP2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VENTXP2 Gene

Genomics for VENTXP2 Gene

Regulatory Elements for VENTXP2 Gene

Enhancers for VENTXP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H083906 0.4 FANTOM5 0.7 +1.3 1272 0 VENTXP2 SLITRK1
GH13H083940 0.6 ENCODE 0.3 -33.8 -33817 1 MAX CEBPB REST SETDB1 TCF7L2 TRIM28 VENTXP2 UBE2D3P4
GH13H083883 0.5 ENCODE 0.3 +24.7 24739 0 PKNOX1 CTBP1 L3MBTL2 SLITRK1 VENTXP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VENTXP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for VENTXP2 Gene

Chromosome:
13
Start:
83,907,301 bp from pter
End:
83,907,839 bp from pter
Size:
539 bases
Orientation:
Minus strand

Genomic View for VENTXP2 Gene

Genes around VENTXP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VENTXP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VENTXP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VENTXP2 Gene

Proteins for VENTXP2 Gene

Post-translational modifications for VENTXP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VENTXP2 Gene

Domains & Families for VENTXP2 Gene

Gene Families for VENTXP2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VENTXP2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VENTXP2 Gene

Function for VENTXP2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for VENTXP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VENTXP2 Gene

Localization for VENTXP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VENTXP2 Gene

Pathways & Interactions for VENTXP2 Gene

SuperPathways for VENTXP2 Gene

No Data Available

Interacting Proteins for VENTXP2 Gene

Gene Ontology (GO) - Biological Process for VENTXP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VENTXP2 Gene

Drugs & Compounds for VENTXP2 Gene

No Compound Related Data Available

Transcripts for VENTXP2 Gene

mRNA/cDNA for VENTXP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for VENTXP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for VENTXP2 Gene

No ASD Table

Relevant External Links for VENTXP2 Gene

GeneLoc Exon Structure for
VENTXP2
ECgene alternative splicing isoforms for
VENTXP2

Expression for VENTXP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VENTXP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of VENTXP2 Gene:

VENTXP2
genes like me logo Genes that share expression patterns with VENTXP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VENTXP2 Gene

Orthologs for VENTXP2 Gene

Evolution for VENTXP2 Gene

ENSEMBL:
Gene Tree for VENTXP2 (if available)
TreeFam:
Gene Tree for VENTXP2 (if available)

No data available for Orthologs for VENTXP2 Gene

Paralogs for VENTXP2 Gene

No data available for Paralogs for VENTXP2 Gene

Variants for VENTXP2 Gene

Relevant External Links for VENTXP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VENTXP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VENTXP2 Gene

Disorders for VENTXP2 Gene

Relevant External Links for VENTXP2

Genetic Association Database (GAD)
VENTXP2

No disorders were found for VENTXP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VENTXP2 Gene

Publications for VENTXP2 Gene

  1. Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci. (PMID: 22365631) Greenwood TA … Kelsoe JR (Biological psychiatry 2012) 45 60
  2. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. (PMID: 21347282) Lettre G … Boerwinkle E (PLoS genetics 2011) 45 60
  3. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 45 60
  4. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 45 60
  5. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 45 60

Products for VENTXP2 Gene

Sources for VENTXP2 Gene

Content
Loading form....