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Aliases for VENTXP1 Gene

Subcategory (RNA class) for VENTXP1 Gene

lncRNA

Aliases for VENTXP1 Gene

  • VENT Homeobox Pseudogene 1 2 3
  • Cancer/Testis Antigen 18 2 3 4
  • Tumor Antigen NA88A 2 3
  • CT18 3 4
  • VENT Homeobox (Xenopus Laevis) Pseudogene 1 2
  • VENT-Like Homeobox 2 Pseudogene 1 3
  • VENTX2P1 3
  • NA88A 3

External Ids for VENTXP1 Gene

ORGUL Members for VENTXP1 Gene

Summaries for VENTXP1 Gene

Entrez Gene Summary for VENTXP1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for VENTXP1 Gene

VENTXP1 (VENT Homeobox Pseudogene 1) is a Pseudogene, and belongs to lncRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VENTXP1 Gene

Genomics for VENTXP1 Gene

Genomic Location for VENTXP1 Gene

Start:
26,558,337 bp from pter
End:
26,561,052 bp from pter
Size:
2,716 bases
Orientation:
Plus strand

Genomic View for VENTXP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VENTXP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VENTXP1 Gene

Regulatory Elements for VENTXP1 Gene

Proteins for VENTXP1 Gene

  • Protein details for VENTXP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C5K6-CT18_HUMAN
    Recommended name:
    Putative tumor antigen NA88-A
    Protein Accession:
    P0C5K6
    Secondary Accessions:

    Protein attributes for VENTXP1 Gene

    Size:
    33 amino acids
    Molecular mass:
    3500 Da
    Quaternary structure:
    No Data Available

neXtProt entry for VENTXP1 Gene

Proteomics data for VENTXP1 Gene at MOPED

Post-translational modifications for VENTXP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VENTXP1 Gene

Domains for VENTXP1 Gene

Gene Families for VENTXP1 Gene

HGNC:
  • NKL :Homeoboxes / ANTP class : NKL subclass

Protein Domains for VENTXP1 Gene

ProtoNet:
genes like me logo Genes that share domains with VENTXP1: view

No data available for UniProtKB/Swiss-Prot for VENTXP1 Gene

Function for VENTXP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VENTXP1 Gene

Localization for VENTXP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for VENTXP1 Gene COMPARTMENTS Subcellular localization image for VENTXP1 gene
Compartment Confidence
extracellular 3
cytosol 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for VENTXP1 Gene

Pathways for VENTXP1 Gene

SuperPathways for VENTXP1 Gene

No Data Available

Interacting Proteins for VENTXP1 Gene

Gene Ontology (GO) - Biological Process for VENTXP1 Gene

None

No data available for Pathways by source for VENTXP1 Gene

Transcripts for VENTXP1 Gene

mRNA/cDNA for VENTXP1 Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VENTXP1 Gene

No ASD Table

Relevant External Links for VENTXP1 Gene

GeneLoc Exon Structure for
VENTXP1
ECgene alternative splicing isoforms for
VENTXP1

Expression for VENTXP1 Gene

mRNA expression in normal human tissues for VENTXP1 Gene

mRNA differential expression in normal tissues according to GTEx for VENTXP1 Gene

This gene is overexpressed in Testis (53.0).

SOURCE GeneReport for Unigene cluster for VENTXP1 Gene Hs.447377

mRNA Expression by UniProt/SwissProt for VENTXP1 Gene

P0C5K6-CT18_HUMAN
Tissue specificity: Expressed in testis and melanoma cell lines.
genes like me logo Genes that share expressions with VENTXP1: view

Orthologs for VENTXP1 Gene

Evolution for VENTXP1 Gene

ENSEMBL:
Gene Tree for VENTXP1 (if available)
TreeFam:
Gene Tree for VENTXP1 (if available)

No data available for Orthologs for VENTXP1 Gene

Paralogs for VENTXP1 Gene

No data available for Paralogs for VENTXP1 Gene

Variants for VENTXP1 Gene

Sequence variations from dbSNP and Humsavar for VENTXP1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs4537454 -- 26,558,274(+) GCCCT(C/G)TCCAG upstream-variant-2KB
rs5944522 -- 26,556,885(+) GAATA(A/C)TATTC upstream-variant-2KB
rs5944523 -- 26,558,363(+) ACACA(C/T)GCGGT nc-transcript-variant
rs5944524 -- 26,559,056(+) AGTCT(A/G)GAAGT nc-transcript-variant
rs5944525 -- 26,559,147(+) CTGCA(C/T)GCACC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for VENTXP1 Gene

Variant ID Type Subtype PubMed ID
nsv522405 CNV Gain 19592680
nsv525877 CNV Gain 19592680

Relevant External Links for VENTXP1 Gene

HapMap Linkage Disequilibrium report
VENTXP1

Disorders for VENTXP1 Gene

Relevant External Links for VENTXP1

Genetic Association Database (GAD)
VENTXP1
genes like me logo Genes that share disorders with VENTXP1: view

No data available for UniProtKB/Swiss-Prot for VENTXP1 Gene

Publications for VENTXP1 Gene

  1. A processed pseudogene codes for a new antigen recognized by a CD8(+) T cell clone on melanoma. (PMID: 10790436) Moreau-Aubry A. … Breathnach R. (J. Exp. Med. 2000) 3 4
  2. Molecular cloning of a human Vent-like homeobox gene. (PMID: 11549314) Moretti P.A.B. … D'Andrea R.J. (Genomics 2001) 3
  3. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3
  4. Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes. (PMID: 17903304) Larson M.G. … Levy D. (BMC Med. Genet. 2007) 49

Products for VENTXP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate VENTXP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for VENTXP1
    • Block miRNA regulation of VENTXP1 using miScript Target Protectors

    Sources for VENTXP1 Gene

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