VENTX Gene
protein-coding GIFtS : 48
GCID: GC10 P135051
VENT homeobox (Previous names: VENT-like homeobox 2, VENT homeobox homolog (Xenopus laevis)... ) (Previous symbol: VENTX2 )
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Aliasesfor VENTX gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases VENT Homeobox 1 2 VENT-Like Homeobox Protein 22 3 HPX42B1 2 3 5 VENT Homeobox Homolog (Xenopus Laevis)1 VENTX21 2 3 5 NA88A2 VENT-Like Homeobox 21 2 Hemopoietic Progenitor Homeobox Protein VENTX22 VENT Homeobox Homolog2 3 Homeobox Protein VENTX2
Export aliases for VENTX gene to outside databases Previous GC identifers: GC10P134941 GC10P128597
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Summariesfor VENTX gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for VENTX : This gene encodes a member of the Vent family of homeodomain proteins. The encoded protein may function as a transcriptional repressor and be involved in mesodermal patterning and hemopoietic stem cell maintenance. Multiple pseudogenes exist for this gene. A transcribed pseudogene located on chromosome X may lead to antigen production in certain melanomas. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: VENTX_HUMAN, O95231 Function : May be involved in ventralization
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Genomic Viewsfor VENTX gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000010.10 NC_018921.1 NT_008818.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the VENTX gene promoter: AhR Nkx3-1 v4 POU2F1 POU2F1a HOXA5 Arnt Other transcription factors Search SABiosciences Chromatin IP Primers for VENTX Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VENTX
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q26.3 Ensembl cytogenetic band: 10q26.3 HGNC cytogenetic band: 10q26.3 VENTX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P135051: view genomic region
(about GC identifiers )
Start:
135,051,175 bp from pter
End:
135,055,433 bp from pter
Size:
4,259 bases
Orientation:
plus strand
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Proteinsfor VENTX gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: VENTX_HUMAN, O95231 (See
protein sequence )Recommended Name: Homeobox protein VENTX Size : 258 amino acids; 27552 Da
Subcellular location : Nucleus (Probable)
Secondary accessions : Q32MZ3Explore the universe of human proteins at neXtProt for VENTX: NX_O95231 VENTX Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_055283.1 ENSEMBL proteins: ENSP00000357556 Human Recombinant Protein Products for VENTX: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
VENTX for ontologies About GeneDecksing VENTX Antibody Products: Assay Products for VENTX:
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Protein
Domains / Familiesfor VENTX gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
VENTX for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O95231 ProtoNet protein and cluster: O95231
UniProtKB/Swiss-Prot: VENTX_HUMAN, O95231 Similarity : Contains 1 homeobox DNA-binding domain
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Functionfor VENTX gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: VENTX_HUMAN, O95231 Function : May be involved in ventralization
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
VENTX for ontologies About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VENTX OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VENTXOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: VENTX (NM_014468 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VENTX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VENTX
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VENTX
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Pathways & Interactionsfor VENTX gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VENTX STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)3 Interacting proteins for VENTX (O95231 3 ENSP00000357556 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007275 multicellular organismal development
IEA --
VENTX for ontologies About GeneDecksing
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Drugs & Compoundsfor VENTX gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for VENTX Search CenterWatch for drugs/clinical trials and news about VENTX
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Transcriptsfor VENTX gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for VENTX gene: NM_014468.2 Unigene Cluster for VENTX:
VENT homeobox Hs.125231 [show with all ESTs ] Unigene Representative Sequence: AF068006 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000325980 (uc010quy.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VENTX OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VENTXOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: VENTX (NM_014468 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VENTX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VENTX
Additional cDNA sequence: AF068006.1 BC108915.1 BC108916.1
1 DOTS entry : DT.95220313
9 AceView cDNA sequences :
NM_014468 AA973729 CA390754 AF068006 BM676533 BX089390 W37703 AA872096 W37326 GeneLoc Exon Structure
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Expression for VENTX gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section VENTX expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image VENTX expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
Stem Cell Differentiation: 2 LifeMap Cells Name Category Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass Definitive endoderm-like cells (A scalable, suspensi... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See VENTX Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for VENTX SOURCE GeneReport for Unigene cluster: Hs.125231 UniProtKB/Swiss-Prot: VENTX_HUMAN, O95231 Tissue specificity : Expressed in bone marrow of patients recovering from chemotherapy. Also expressed in anerythroleukemia cell line SABiosciences Custom PCR Arrays for VENTX Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VENTXBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat VENTX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VENTX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VENTX In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VENTX
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Orthologsfor VENTX gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for VENTX gene from 5/11 species (see all 11 ) About this table
Species with no ortholog for VENTX ENSEMBL Gene Tree for VENTX (if available)TreeFam Gene Tree for VENTX (if available)
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Paralogsfor VENTX gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for VENTX gene 1 SIMAP similar gene for VENTX using alignment to 1 protein entry: VENTX_HUMAN :VENTX1
VENTX for paralogs About GeneDecksing 5/7 Pseudogenes.org Pseudogenes for VENTX (see all 7 )PGOHUM00000239855 PGOHUM00000248448 PGOHUM00000237560 PGOHUM00000237957 PGOHUM00000249291
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Genomic Variantsfor VENTX gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 10 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for VENTX (135051175 - 135055433 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 10 variations for VENTX 10 CNVs : 29878 2896 4723 4721 30525 5272 29879 4722 5273 3829
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VENTX
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Disorders
/ Diseasesfor VENTX gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
VENTX for disorders About GeneDecksing
OMIM gene information: 607158
OMIM disorders : --4 diseases for VENTX : About MalaCards melanoma acute myeloid leukemia myeloid leukemia leukemia Export disorders for VENTX gene to outside databases
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Publicationsfor VENTX gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for VENTX gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with VENTX) Utopia : connect your pdf to the dynamic world of online information
A processed pseudogene codes for a new antigen recognized by a CD8(+) T cell clone on melanoma. (PubMed id 10790436) 1 , 3, 9 Moreau-Aubry A.... Breathnach R. (2000) Molecular cloning of a human Vent-like homeobox gene. (PubMed id 11549314) 1 , 2 Moretti P.A.B....D'Andrea R.J. (2001) Suppression of homeobox transcription factor VentX pro motes expansion of human hematopoietic stem/multipotent progenitor cells. (PubMed id 22791709) 1 Gao H....Zhu Z. (2012) VentX trans-activates p53 and p16ink4a to regulate ce llular senescence. (PubMed id 21325273) 1 Wu X....Zhu Z. (2011) The homeobox transcription factor VentX controls huma n macrophage terminal differentiation and proinflammatory activation. (PubMed id 21670496) 1 Wu X....Zhu Z. (2011) VentX, a novel lymphoid-enhancing factor/T-cell facto r-associated transcription repressor, is a putative tumor suppressor. (PubMed id 20028861) 1 Gao H....Zhu Z. (2010) The vent-like homeobox gene VENTX promotes human myel oid differentiation and is highly expressed in acute myeloid leukemia. (PubMed id 20833819) 1 Rawat V.P....Feuring-Buske M. (2010) An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142) 1 Ravasi T....Hayashizaki Y. (2010) Classification and nomenclature of all human homeobox genes. (PubMed id 17963489) 1 Holland P.W.H.... Bruford E.A. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for VENTX gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VENTX gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing VENTX gene
(According to HUGE )
About This Section --
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Specialized Databases showing VENTX gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for VENTX gene: Search GeneIP for patents involving VENTX GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor VENTX gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for VENTX OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for VENTX OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VENTX OriGene Protein Over-expression Lysate for VENTX Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for VENTX Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VENTX OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VENTX Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for VENTX OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for VENTX OriGene Custom Protein Services for VENTX OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat VENTX QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VENTX QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VENTX QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat VENTX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VENTX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VENTX
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VENTX
ThermoFisher Antibodies for VENTX
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VENTX
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