VEGFA Gene
protein-coding GIFtS : 71
GCID: GC06 P043737
vascular endothelial growth factor A (Previous name: vascular endothelial growth factor ) (Previous symbol: VEGF )
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Aliasesfor VEGFA gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Vascular Endothelial Growth Factor A 1 2 Vascular Permeability Factor2 3 VEGF1 2 3 5 MVCD12 5 VPF1 2 3 Vascular Endothelial Growth Factor1 VEGF-A1 3
Export aliases for VEGFA gene to outside databases Previous GC identifers: GC06P043846 GC06P043458
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Summariesfor VEGFA gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for VEGFA : This gene is a member of the PDGF/VEGF growth factor family and encodes a protein that is often found as a disulfide linked homodimer. This protein is a glycosylated mitogen that specifically acts on endothelial cells and has various effects, including mediating increased vascular permeability, inducing angiogenesis, vasculogenesis and endothelial cell growth, promoting cell migration, and inhibiting apoptosis. Elevated levels of this protein is linked to POEMS syndrome, also known as Crow-Fukase syndrome. Mutations in this gene have been associated with proliferative and nonproliferative diabetic retinopathy. Alternatively spliced transcript variants, encoding either freely secreted or cell-associated isoforms, have been characterized. There is also evidence for the use of non-AUG (CUG) translation initiation sites upstream of, and in-frame with the first AUG, leading to additional isoforms. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692 Function : Growth factor active in angiogenesis, vasculogenesis and endothelial cell growth. Induces endothelial cellproliferation, promotes cell migration, inhibits apoptosis and induces permeabilization of blood vessels. Binds to the FLT1/VEGFR1 and KDR/VEGFR2 receptors, heparan sulfate and heparin. NRP1/Neuropilin-1 binds isoforms VEGF-165 and VEGF-145. Isoform VEGF165B binds to KDR but does not activate downstream signaling pathways, does not activate angiogenesis and inhibits tumor growth summary
for VEGFA : Vascular endothelial growth factor is a signaling protein involved in the regulation of angiogenesis andvasculogenesis. VEGF binds to and activates a receptor tyrosine kinase, VEGFR. Three VEGFR isoforms havebeen identified in humans; VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFR-2 mediates themajority of cellular responses to VEGF. VEGFR-1 is thought to modulate VEGFR-2 signaling or to act as adummy/decoy receptor to sequester VEGF away from VEGFR-2. Gene Wiki entry for VEGFA (Vascular endothelial growth factor A)
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Genomic Viewsfor VEGFA gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_007592.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the VEGFA gene promoter: PPAR-alpha PPAR-gamma1 Other transcription factors Search SABiosciences Chromatin IP Primers for VEGFA Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VEGFA
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p12 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p12 VEGFA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P043737: view genomic region
(about GC identifiers )
Start:
43,737,921 bp from pter
End:
43,754,224 bp from pter
Size:
16,304 bases
Orientation:
plus strand
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Proteinsfor VEGFA gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692 (See
protein sequence )Recommended Name: Vascular endothelial growth factor A precursor Size : 232 amino acids; 27042 Da
Subunit : Homodimer; disulfide-linked. Also found as heterodimer with PGF (By similarity)
Subcellular location : Secreted. Note=VEGF121 is acidic and freely secreted. VEGF165 is more basic, has heparin-bindingproperties and, although a signicant proportion remains cell-associated, most is freely secreted. VEGF189 is very basic, it is cell-associated after secretion and is bound avidly by heparin and the extracellular matrix, although it may be released as a soluble form by heparin, heparinase or plasmin
Sequence caution : Sequence=AAC63102.1; Type=Erroneous initiation; Sequence=AAC63143.1; Type=Miscellaneous discrepancy;Note=Unusual initiator. The initiator methionine is coded by a non-canonical CTG leucine codon; Sequence=CAC19512.2; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical CTG leucine codon; Sequence=CAC19516.2; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical CTG leucine codon;
6/28 PDB 3D structures from and Proteopedia for VEGFA (see all 28 ):1BJ1 (3D)
  1CZ8 (3D)
  1FLT (3D)
  1KAT (3D)
  1KMX (3D)
  1MJV (3D)
 
Secondary accessions : B5BU86 O60720 O75875 Q074Z4 Q16889 Q5UB46 Q6P0P5 Q96KJ0 Q96L82 Q96NW5 Q9H1W8Q9H1W9 Q9UH58 Q9UL23 Alternative promoter usage, Alternative splicing, Alternative initiation : 13 isoforms : P15692-1 P15692-2 P15692-3 P15692-4 P15692-5 P15692-6 P15692-8 P15692-9 P15692-10 P15692-11 P15692-12 P15692-13 P15692-14 (Gene prediction based on EST data. Produced by alternative promoter usage and alternative initiation. Starts at an alternative upstream CUG codon)Explore the universe of human proteins at neXtProt for VEGFA: NX_P15692 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P15692 VEGFA Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (18 alternative transcripts):
NP_001020537.2 NP_001020538.2 NP_001020539.2 NP_001020540.2 NP_001020541.2 NP_001028928.1 NP_001165093.1 NP_001165094.1 NP_001165095.1 NP_001165096.1 NP_001165097.1 NP_001165098.1 NP_001165099.1 NP_001165100.1 NP_001165101.1 NP_001191313.1 NP_001191314.1 NP_003367.4 ENSEMBL proteins: ENSP00000361137 ENSP00000317598 ENSP00000388663 ENSP00000389864 ENSP00000361125 ENSP00000421561 ENSP00000388465 ENSP00000361134 ENSP00000361148 ENSP00000430594 ENSP00000428321 ENSP00000430479 ENSP00000429643 ENSP00000409911 ENSP00000430829 ENSP00000429008 ENSP00000430002 ENSP00000230480 ENSP00000429592 Reactome Protein details: P15692 Human Recombinant Protein Products: Gene Ontology (GO): 5/10 cellular component terms (GO ID links to tree view) (see all 10 ): About this table
VEGFA for ontologies About GeneDecksing VEGFA Antibody Products: Assay Products for VEGFA:
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Protein
Domains / Familiesfor VEGFA gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
VEGFA for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P15692 ProtoNet protein and cluster: P15692
1 Blocks protein family : IPB000072 Platelet-derived growth factor (PDGF) UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692 Similarity : Belongs to the PDGF/VEGF growth factor family
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Functionfor VEGFA gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692 Function : Growth factor active in angiogenesis, vasculogenesis and endothelial cell growth. Induces endothelial cellproliferation, promotes cell migration, inhibits apoptosis and induces permeabilization of blood vessels. Binds to the FLT1/VEGFR1 and KDR/VEGFR2 receptors, heparan sulfate and heparin. NRP1/Neuropilin-1 binds isoforms VEGF-165 and VEGF-145. Isoform VEGF165B binds to KDR but does not activate downstream signaling pathways, does not activate angiogenesis and inhibits tumor growth Induction : Regulated by growth factors, cytokines, gonadotropins, nitric oxide, hypoxia, hypoglycemia and oncogenicmutations Summary:
During embryonic development, VEGFA as signaling molecule is secreted from the following cells: Branchial Arch 2 Ectoderm Cells in Branchial Arch 2 , Hypertrophic Chondrocytes in Cervical Vertebrae (see all 14 ). It affects the following cells: Angioblasts in Perineural capillary Plexus , Arterial endothelial cells in Paired Dorsal Aorta (see all 15 ). miRNA Products: miRTarBase miRNAs that target VEGFA:hsa-mir-34a (MIRT004513 ), hsa-mir-378 (MIRT004277 ), hsa-mir-17 (MIRT004271 ), hsa-mir-330-3p (MIRT004278 ), hsa-mir-140-5p (MIRT003812 ), hsa-mir-520h (MIRT004458 ), hsa-mir-20b (MIRT004451 ), hsa-mir-20a (MIRT004450 ), hsa-mir-125a-5p (MIRT004445 ), hsa-mir-107 (MIRT003814 ), hsa-mir-372 (MIRT004461 ), hsa-mir-383 (MIRT004443 ), hsa-mir-34b (MIRT004519 ), hsa-mir-302d (MIRT000722 ), hsa-mir-29b (MIRT003813 ), hsa-mir-150 (MIRT004272 ), hsa-mir-16 (MIRT003890 ), hsa-mir-504 (MIRT004457 ), hsa-mir-361-5p (MIRT004447 ), hsa-mir-126 (MIRT003428 ), hsa-mir-93 (MIRT004055 ), hsa-mir-205 (MIRT004518 ), hsa-mir-15a (MIRT004275 ), hsa-mir-134 (MIRT003811 ), hsa-mir-106a (MIRT004465 ), hsa-mir-373 (MIRT000721 ), hsa-mir-15b (MIRT004274 ), hsa-mir-106b (MIRT004466 ), hsa-mir-195 (MIRT004273 ), hsa-mir-147 (MIRT003810 ), hsa-mir-520g (MIRT004276 ) OriGene 3'-UTR Clone (see all 7 ): VEGFA Browse MicroRNA Expression Plasmids QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat VEGFA 8/115 QIAGEN miScript miRNA Assays for microRNAs that regulate VEGFA (see all 115 ): hsa-miR-576-3p hsa-miR-140-5p hsa-miR-579 hsa-miR-361-5p hsa-miR-3152-3p hsa-miR-520e hsa-miR-1321 hsa-miR-15a Browse SwitchGear 3'UTR luciferase reporter plasmids
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA (see all 27 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA (see all 16 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 18 ): VEGFA (NM_001204384 ) Sino Biological Human cDNA Clone for VEGFA DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VEGFA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VEGFA
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VEGFA
Gene Ontology (GO): 5/16 molecular function terms (GO ID links to tree view) (see all 16 ): About this table
VEGFA for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for VEGFA :Animal Models: Mouse knock-outs for VEGFA: Vegfa tm1Gne Vegfa tm1Dco Vegfa tm2Pec Vegfa tm1Pec 15/25 MGI mutant phenotypes (inferred from 12 alleles ) (MGI details for Vegfa) (see all 25 ):
VEGFA for phenotypes About GeneDecksing
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Pathways & Interactionsfor VEGFA gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/38 super-pathways (see all 38 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Development_CNTF receptor signaling 2 Development VEGF signaling via VEGFR2 - generic cascades 3 Signaling by VEGF 4 Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha 5 Transcription_P53 signaling pathway
Pathway sources See GeneCards unified pathways Show all pathways 5/10 EMD Millipore Pathways for VEGFA (see all 10 )5/10 GeneGo (Thomson Reuters) Pathways for VEGFA (see all 10 )5/17 BioSystems Pathways for VEGFA (see all 17 ) 5/13
Reactome Pathways for VEGFA (see all 13 )2 PharmGKB Pathways for VEGFA 5/9
Kegg Pathways (Kegg details for VEGFA) (see all 9 ):
VEGFA for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for VEGFA STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/61 Interacting proteins for VEGFA (P15692 1 , 2 , 3 ENSP00000361125 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 61 )Interactant Interaction Details GeneCard External ID(s) FLT1 P17948 1 , 3 , ENSP00000282397 4 EBI-1026643,EBI-1026718 I2D:
score=5 STRING: ENSP00000282397 NRP1 O14786 2 , 3 , ENSP00000265371 4 MINT-2834244 MINT-2834194 MINT-2834269 I2D:
score=4 STRING: ENSP00000265371 KDR P35968 1 , 2 , 3 , ENSP00000263923 4 EBI-1026691,EBI-1005487 MINT-2834174 I2D:
score=5 STRING: ENSP00000263923 SPARC P09486 3 , ENSP00000231061 4 I2D:
score=4 STRING: ENSP00000231061 GPC1 P35052 3 , ENSP00000264039 4 I2D:
score=3 STRING: ENSP00000264039
About this table Gene Ontology (GO): 5/105 biological process terms (GO ID links to tree view) (see all 105 ): About this table
VEGFA for ontologies About GeneDecksing
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Drugs & Compoundsfor VEGFA gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
VEGFA for compounds About GeneDecksing Compounds for VEGFA available from Tocris Bioscience About this table Compound Action
CAS
# SU 5416 VEGFR inhibitor. Also inhibits KIT, RET, MET and FLT3 [204005-46-9] Ki 8751 Potent, selective VEGFR-2 inhibitor [228559-41-9] SU 4312 Potent inhibitor of VEGFR tyrosine kinase [5812-07-7] ZM 323881 hydrochloride Potent, selective inhibitor of VEGFR-2 [324077-30-7] ZM 306416 hydrochloride Inhibitor of VEGF receptor tyrosine kinase [690206-97-4]
3 HMDB Compounds for VEGFA About this table 8 DrugBank Compounds for VEGFA About this table 10/106 Novoseek chemical compound relationships for VEGFA gene (see all 106 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
vegf
99.5
91016
9921991 (15), 10070308 (15), 15790460 (15), 15748443 (15) (see all 99 )
su5416
84.2
93
15474452 (5), 17169805 (4), 11156244 (3), 19420288 (3) (see all 51 )
pegaptanib
83.9
91
17509689 (3), 19668746 (3), 10548435 (2), 19734041 (2) (see all 54 )
matrigel
83.7
155
16447633 (2), 18080776 (2), 10634803 (2), 19616847 (2) (see all 99 )
ranibizumab
82.8
135
17714704 (5), 19643496 (4), 19674731 (3), 19553804 (3) (see all 66 )
sunitinib
82.2
97
17605814 (3), 19277038 (2), 17710208 (2), 18669461 (2) (see all 75 )
ptk787
80.7
50
10786682 (2), 19577260 (2), 15705616 (1), 15979888 (1) (see all 32 )
zd6474
80.1
52
19447868 (5), 19528456 (4), 12183421 (3), 19949019 (2) (see all 30 )
tyrosine
79.5
1237
19376222 (6), 9182576 (6), 10976958 (4), 9625748 (4) (see all 99 )
azd 2171
77.3
15
15899831 (1), 17592499 (1), 17906459 (1), 17634482 (1) (see all 12 )
Search CenterWatch for drugs/clinical trials and news about VEGFA
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Transcriptsfor VEGFA gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for VEGFA gene (18 alternative transcripts): NM_001025366.2 NM_001025367.2 NM_001025368.2 NM_001025369.2 NM_001025370.2 NM_001033756.2 NM_001171622.1 NM_001171623.1 NM_001171624.1 NM_001171625.1 NM_001171626.1 NM_001171627.1 NM_001171628.1 NM_001171629.1 NM_001171630.1 NM_001204384.1 NM_001204385.1 NM_003376.5 Unigene Cluster for VEGFA:
Vascular endothelial growth factor A Hs.73793 [show with all ESTs ] Unigene Representative Sequence: NM_001025366 18/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25 ): ENST00000476772 (uc003owb.3 ) ENST00000372067 (uc003owd.3 uc010jyx.3 uc003owf.3 uc003owg.3 uc003owh.3 uc003owe.3 uc021yzu.1 uc003owj.3 uc003owi.3 )ENST00000324450 ENST00000417285 ENST00000413642 ENST00000372055 ENST00000482630 ENST00000425836 ENST00000372064 ENST00000372077 ENST00000519767 ENST00000520948 ENST00000518538 ENST00000523873 ENST00000523950 ENST00000512683 ENST00000457104 ENST00000518689 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA (see all 27 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA (see all 16 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 18 ): VEGFA (NM_001204384 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VEGFA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VEGFA
Additional cDNA sequence: AB021221.1 AB451322.1 AB451451.1 AF022375.1 AF024710.1 AF062645.1 AF091352.1 AF214570.1 AF430806.1 AF486837.1 AJ010438.1 AK056914.1 AK125666.1 AY047581.1 AY263145.1 AY500353.1 AY766116.1 BC011177.1 BC019867.2 BC058855.1 BC065522.1 DQ229900.1 M27281.1 M32977.1 S85192.1 X62568.1
22 DOTS entries : DT.101962506 DT.100817302
DT.95350198 DT.95339476 DT.100743047 DT.453994 DT.100817298 DT.121334558 DT.100817299 DT.101976085 DT.92450656 DT.92450657 DT.100817293 DT.102828056 DT.121334539 DT.40235175 DT.92450653 DT.100817297 DT.92450650 DT.92450651 DT.95182536 DT.95262131 24/416 AceView cDNA sequences (see all 416 ):
CR592173 BQ880667 AY263145 AA923135 AA992216 CK299337 AW572374 CA866775 BM970555 BM053003 AI085744 CD617014 AA724008 CA307359 AF430806 BQ632326 BQ006682 AF062645 AW571763 AA358986 CA442374 BF343433 W52131 CK904368 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for VEGFA (see all 7 ) About this scheme ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b · 9c · 9d SP1 :         -   -               -   -             SP2 :         -   -                 -             SP3 :         -   -           -   -   -   -             SP4 :         -   -             -   -   -             SP5 :         -   -           -   -   -   -     -        
ECgene alternative splicing isoforms for VEGFA
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Expression for VEGFA gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section VEGFA expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTTCCAATCT
About this image VEGFA expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See VEGFA Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for VEGFA SOURCE GeneReport for Unigene cluster: Hs.73793 UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692 Tissue specificity : Isoform VEGF189, isoform VEGF165 and isoform VEGF121 are widely expressed. Isoform VEGF206 andisoform VEGF145 are not widely expressed SABiosciences Expression via Pathway-Focused PCR Arrays including VEGFA (see all 42 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VEGFABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat VEGFA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VEGFA Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat VEGFA In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VEGFA
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Orthologsfor VEGFA gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for VEGFA gene from 4/11 species (see all 11 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
VEGFA1
vascular endothelial growth factor A
78.29(n) 74.88(a)
 
395909 NM_205042.2 NP_990373.1
lizard (Anolis carolinensis)
Reptilia
VEGFA6
--
64(a)
1 ↔ 1
1(226686337-226703857)
African clawed frog (Xenopus laevis)
Amphibia
vegf-A2
vascular endothelial growth factor
82.81(n)
 
AF008594.1
zebrafish (Danio rerio)
Actinopterygii
vegf2
vascular endothelial growth factor
75.7(n)
 
30682 AF016244.1
ENSEMBL Gene Tree for VEGFA (if available)TreeFam Gene Tree for VEGFA (if available)
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Paralogsfor VEGFA gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for VEGFA gene VEGFC 2 PGF 2 FIGF 2 VEGFB 2 4 SIMAP similar genes for VEGFA using alignment to 13 protein entries: VEGFA_HUMAN (see all proteins ):VEGF VEGF41 PGF VEGFB
VEGFA for paralogs About GeneDecksing
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Genomic Variantsfor VEGFA gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for VEGFA (43737921 - 43754224 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for VEGFA: -- Human Gene Mutation Database (HGMD) : VEGFA SABiosciences Cancer Mutation PCR Assays
2 SABiosciences qBiomarker Copy Number PCR Arrays containing VEGFA :
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VEGFA
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Disorders
/ Diseasesfor VEGFA gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
VEGFA for disorders About GeneDecksing OMIM gene information: 192240 OMIM disorders : 603933 UniProtKB/Swiss-Prot: VEGFA_HUMAN, P15692
Defects in VEGFA are a cause of susceptibility to microvascular complications of diabetes type 1 (MVCD1) [MIM:603933]. These are pathological conditions that develop in numerous tissues and organs as a consequence of diabetes mellitus. They include diabetic retinopathy, diabetic nephropathy leading to end-stage renal disease, and diabetic neuropathy. Diabetic retinopathy remains the major cause of new-onset blindness among diabetic adults. It is characterized by vascular permeability and increased tissue ischemia and angiogenesis 20/524 diseases for VEGFA (see all 524 ): About MalaCards diabetic retinopathy poems syndrome von hippel-lindau disease crimean-congo hemorrhagic fever kuhnt-junius degeneration twin-to-twin transfusion syndrome retinal vein occlusion central retinal vein occlusion progesterone-receptor positive breast cancer rubeosis iridis sturge-weber syndrome growth hormone secreting pituitary adenoma twin twin transfusion syndrome alpha 1-antitrypsin deficiency estrogen-receptor negative breast cancer estrogen-receptor positive breast cancer severe nonproliferative diabetic retinopathy angioid streaks shwachman-diamond syndrome b-cell non-hodgkin lymphoma 20/59 diseases from the University of Copenhagen DISEASES database for VEGFA (see all 59 ):Diabetic retinopathy Age related macular degeneration Kuhnt-Junius degeneration Colorectal cancer Carcinoma Retinopathy of prematurity Lung cancer Macular retinal edema Renal cell carcinoma Malignant glioma Breast cancer Hypertension Blindness Ovarian hyperstimulation syndrome Heart disease Retinal vein occlusion Keratitis Ovarian cancer Hepatocellular carcinoma POEMS syndrome 10/97 Novoseek disease relationships for VEGFA gene (see all 97 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
neovascularization
92.9
1184
10406801 (4), 16179869 (4), 19639355 (4), 9815760 (4) (see all 99 )
tumors
88.1
9908
16222693 (9), 11176129 (9), 1940805 (9), 15699727 (8) (see all 99 )
metastasis
83.9
1955
15473929 (8), 12926153 (6), 10070308 (6), 17283532 (6) (see all 99 )
cancer
80.7
1954
9933044 (8), 12726933 (6), 19633424 (6), 10853032 (6) (see all 99 )
proliferative diabetic retinopathy
80.2
196
7943121 (4), 11935151 (4), 15767056 (3), 18053608 (3) (see all 95 )
diabetic retinopathy
79.8
354
19216096 (5), 19646547 (4), 11440280 (4), 11642376 (4) (see all 99 )
solid tumor
79.7
294
11734110 (3), 10811135 (3), 11297245 (2), 11776866 (2) (see all 99 )
retinal neovascularization
78
88
16936124 (4), 7479819 (3), 16785756 (3), 11740151 (2) (see all 43 )
choroidal neovascularization
76.2
124
10410552 (3), 10484206 (2), 15389527 (2), 18728623 (2) (see all 74 )
retinopathy
73.9
314
11437859 (4), 18382886 (4), 20169883 (4), 9046048 (4) (see all 99 )
Human Genome Epidemiology (HuGE) Navigator: VEGFA (439 documents) Export disorders for VEGFA gene to outside databases
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Publicationsfor VEGFA gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for VEGFA gene, integrated from 9 sources (see all 8942 ): (articles sorted by number of sources associating them with VEGFA) Utopia : connect your pdf to the dynamic world of online information
The crystal structure of vascular endothelial growth factor (VEGF) refined to 1.93-A resolution: multiple copy flexibility and receptor binding. (PubMed id 9351807) 1 , 2 , 9 Muller Y.A.... de Vos A.M. (1997) A common polymorphism in the 5'-untranslated region of the VEGF gene is associated with diabetic retinopathy in type 2 diabetes. (PubMed id 11978667) 1 , 2 , 9 Awata T....Katayama S. (2002) Solution structure of the heparin-binding domain of vascular endothelial growth factor. (PubMed id 9634701) 1 , 2 , 9 Fairbrother W.J....Starovasnik M.A. (1998) AIDS-associated Kaposi's sarcoma cells in culture express vascular endothelial growth factor. (PubMed id 1567395) 1 , 2 , 9 Weindel K.... Weich H.A. (1992) Heterogeneous vascular endothelial growth factor (VEGF) isoform mRNA and receptor mRNA expression in human glomeruli, and the identification of VEGF148 mRNA, a novel truncated splice variant. (PubMed id 10464055) 1 , 2 , 9 Whittle C.J....Harper S.J. (1999) VEGF145, a secreted vascular endothelial growth factor isoform that binds to extracellular matrix. (PubMed id 9054410) 1 , 2 , 9 Poltorak Z.... Neufeld G. (1997) Minimal active domain and mechanism of action of the angiogenesis inhibitor histidine-rich glycoprotein. (PubMed id 16489009) 1 , 2 Dixelius J....Claesson-Welsh L. (2006) Nuclear localization of long-VEGF is associated with hypoxia and tumor angiogenesis. (PubMed id 15896327) 1 , 2 Rosenbaum-Dekel Y....Levi B.Z. (2005) Control of the vascular endothelial growth factor internal ribosome entry site (IRES) activity and translation initiation by alternatively spliced coding sequences. (PubMed id 14764596) 1 , 2 Bornes S.... Touriol C. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004)
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External Searches for VEGFA gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VEGFA gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing VEGFA gene
(According to HUGE )
About This Section --
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Specialized Databases showing VEGFA gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for VEGFA Pharmacogenomics, SNPs, Pathways R&D Systems' cytokine mini-reviews: VEGF http://www.rndsystems.com/molecule_detail.aspx?m=2247 Wikipedia http://en.wikipedia.org/wiki/Vascular_endothelial_growth_factor SeattleSNPs http://pga.gs.washington.edu/data/vegf/
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About This Section Patent Information for VEGFA gene: Search GeneIP for patents involving VEGFA Licensable Technologies for VEGFA gene: GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor VEGFA gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for VEGFA OriGene shRNA RFP for VEGFA OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for VEGFA OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VEGFA OriGene Protein Over-expression Lysate for VEGFA Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for VEGFA OriGene 3'-UTR Clone for VEGFA OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VEGFA Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for VEGFA OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for VEGFA OriGene Custom Protein Services for VEGFA OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat VEGFA QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VEGFA QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VEGFA QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat VEGFA Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat VEGFA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VEGFA
Tocris compounds for VEGFA
Recombinant Protein for VEGFA
VEGFA Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VEGFA
ThermoFisher Antibody for VEGFA
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VEGFA
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