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Aliases & Descriptions for VCL
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CMD1W 2 , 5 MVCL 2 Metavinculin 3 OTTHUMP00000019861 2 OTTHUMP00000043885 2 metavinculin 2 vinculin 2
Search outside databases for aliases for VCL genePrevious GC identifers: GC10P074712 GC10P074861 GC10P075650 GC10P075102
Summaries for VCL (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for VCL : Vinculin is a cytoskeletal protein associated with cell-cell and cell-matrix junctions, where it isthought to function as one of several interacting proteins involved in anchoring F-actin to themembrane. Defects in VCL are the cause of cardiomyopathy dilated type 1W. Dilated cardiomyopathyis a disorder characterized by ventricular dilation and impaired systolic function, resulting incongestive heart failure and arrhythmia. Multiple alternatively spliced transcript variants havebeen found for this gene, but the biological validity of some variants has not been determined.[provided by RefSeq] UniProtKB/Swiss-Prot: VINC_HUMAN, P18206 Function : Involved in cell adhesion. May be involved in the attachment of the actin-basedmicrofilaments to the plasma membrane. May also play important roles in cell morphology andlocomotion
Gene Wiki entry for VCL (Vinculin)
Genomic Location for VCL
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the VCL gene Entrez Gene cytogenetic band: 10q22.2 Ensembl cytogenetic band: 10q22.2 HGNC cytogenetic band: 10q22.1-q23 VCL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P075427:
(about GC identifiers )
Start:
75,427,878 bp from pter
End:
75,549,924 bp from pter
Size:
122,047 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_008583.16 Proteins for VCL
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: VINC_HUMAN, P18206 (See
protein sequence )Recommended Name: Vinculin Size : 1134 amino acids; 123799 Da
Subunit : Exhibits self-association properties. Interacts with NRAP and SORBS1 (By similarity).Interacts with TLN1. Interacts with SYNM
Subcellular location : Cytoplasm, cytoskeleton. Cell junction, adherens junction. Cell membrane;Peripheral membrane protein; Cytoplasmic side. Note=Cytoplasmic face of adhesion plaques
PDB structures from and Proteopedia : 1RKC (3D)
 1RKE (3D)
 1SYQ (3D)
 1TR2 (3D)
 1YDI (3D)
 2GWW (3D)
 2HSQ (3D)
 2IBF (3D)
 
Secondary accessions : Q16450 Q5SWX2 Q7Z3B8 Q8IXU7Alternative splicing : 3 isoforms : P18206-1 P18206-2 P18206-3
Post-translational modifications:
Phosphorylated; on serines, threonines and tyrosines. Phosphorylation on Tyr-1133 in activatedplatelets affects head-tail interactions and cell spreading but has no effect on actin binding noron localization to focal adhesion plaques (By similarity)1
Aceylated; mainly by myristic acid but also small amount of palmitic acid (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003364.1 NP_054706.1 ENSEMBL proteins: ENSP00000211998 ENSP00000361841 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/9 Gene Ontology (GO) cellular component terms (links to tree view) (see all 9
):
About this table Antibodies for VCL: Assays for VCL:
Protein
Domains/ Families for VCL(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P18206 ProtoNet protein and cluster: P18206
UniProtKB/Swiss-Prot: VINC_HUMAN, P18206 Similarity : Belongs to the vinculin/alpha-catenin family
Gene Function for VCL
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003373 Applied Biosystems Silencer ® siRNAs for VCL Sigma-Aldrich siRNA and siRNA Panels for VCL Sigma-Aldrich shRNA Panels and shRNA for VCL Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003373                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003373                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003373  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_014000 UniProtKB/Swiss-Prot: VINC_HUMAN, P18206 Function : Involved in cell adhesion. May be involved in the attachment of the actin-basedmicrofilaments to the plasma membrane. May also play important roles in cell morphology andlocomotion
Genatlas biochemistry entry for VCL :vinculin,130kDa,component of adherens type of cell junction (catenin family)
11 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Vcl) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for VCL
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for VCL (Your Favorite Gene powered by Ingenuity) (see all 6
) Gene Network CentralTM Interacting Genes and Proteins Network for VCL 5/87 Interacting proteins for VCL (ENSP00000211998 3 P18206 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 87
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for VCL (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for VCL 10/40 Novoseek chemical compound relationships for VCL gene (see all 40
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
phosphotyrosine
71.14
28
10318759 (2), 12584242 (2), 7507854 (1), 7518470 (1) (see all 25 )
phalloidin
62.07
5
11581207 (1), 9224767 (1), 10438068 (1), 8392930 (1) (see all 5 )
tyrosine
61.35
62
15229287 (7), 7691054 (4), 8288618 (2), 9364324 (2) (see all 43 )
swinholide a
56.62
2
9178097 (2)
cytochalasin
42.79
1
1629252 (1)
titanium
40.74
6
15472401 (2), 1722250 (1), 7512646 (1), 17628662 (1)
pip2
39.06
11
8288618 (4), 9560340 (3), 15037311 (1)
matrigel
35.05
1
8773143 (1)
cytochalasin b
35.00
2
8843917 (1), 2169493 (1)
sodium orthovanadate
29.46
1
11159014 (1)
About this table
Transcripts for VCL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003373 Sigma-Aldrich siRNA and siRNA Panels for VCL Sigma-Aldrich shRNA Panels and shRNA for VCL Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003373 NM_014000
REFSEQ mRNAs for VCL gene (2 alternative transcripts): NM_003373.3 NM_014000.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003373 NM_014000
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003373                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003373                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003373  
Additional cDNA sequence: AK055524.1 AK126978.1 AK296509.1 AK300280.1 AK304823.1 AL832130.1 BC013847.1 BC039174.1 CR612677.1 M33308.1
24/26 DOTS entries (see all 26
): DT.91768787 DT.100725860 DT.92411715 DT.91768786 DT.101959960 DT.87008295 DT.95095432 DT.95366359 DT.91825146 DT.95159491 DT.100030402 DT.121291153 DT.100030408 DT.100030403 DT.100827836 DT.100827838 DT.100827845 DT.121291034 DT.121291095 DT.40225418 DT.86846851 DT.91650533 DT.91812583 DT.95340721
24/504 AceView cDNA sequences (see all 504
):BU557072 BM787152 BC013847 AW589920 W76280 AU133247 BM738572 BC039174 AU133271 BQ898452 CN482073 CA393075 AL708715 AU131827 BU507716 BM737598 AU102359 CB267748 CA489202 BM791106 BF034214 CN483080 BF992633 BM819220
highest scoring ESTs for VCL :M33308 AA031688 AA031689 AA036840 AA045285 AA046566 AA090531 AA099284 AA132058 AA132202
Unigene Cluster for VCL: Vinculin Hs.643896 [show with all ESTs ] Unigene Representative Sequence: NM_014000 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for VCL (see all 12
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17a · 17b · SP1 :     -                                             -     SP2 :                                                 -     SP3 :                                                 -     SP4 :                                                     SP5 :     -       -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -       -    
ExUns: 17c ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b · 24c · 24d SP1 :     -     -   -     -             SP2 :     -     -   -     -             SP3 :     -       -     -             SP4 :         -   -     -             SP5 :                          
About this scheme ECgene alternative splicing isoforms for VCL 2 Ensembl transcripts including schematic representations : ENST00000211998
ENST00000372755
Expression for VCL
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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VCL expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for VCL 1 / 2 / 3
5 probe-sets matching VCL gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTGCTCTCCSOURCE GeneReport for Unigene cluster: Hs.643896 Expression variation in blood from EXPOLDB for VCL
UniProtKB/Swiss-Prot: VINC_HUMAN, P18206 Tissue specificity : Metavinculin is muscle-specific
Orthologs for VCL
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for VCL gene from 5/12 species (see all 12
)
About this table Species with no ortholog for VCL ENSEMBL Gene Tree for VCL Paralogs for VCL (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for VCL gene CTNNAL1 2
SNPs/Variants for VCL (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for VCL (up to first 250kb)
Disorders & Mutations for VCL
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 193065 disorders : 611407 UniProtKB/Swiss-Prot: VINC_HUMAN, P18206
Defects in VCL are the cause of cardiomyopathy dilated type 1W (CMD1W) [MIM:611407].Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolicfunction, resulting in congestive heart failure and arrhythmia. Patients are at risk of prematuredeath
10/41 Novoseek disease relationships for VCL gene (see all 41
)
About this table 1 PharmGKB disease relationship for VCL gene About this table GeneTests: VCL Dilated Cardiomyopathy Human Gene Mutation Database : VCL Human Genome Epidemiology Navigator: VCL (2 documents)
Medical News for VCL (Possibly Related Articles in
Doctor's Guide )
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--
Publications for VCL (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/552 PubMed articles for VCL gene (see all 552
): An additional exon in the human vinculin gene specifically encodes meta-vinculin-specific difference peptide. Cross-species comparison reveals variable and conserved motifs in the meta-vinculin insert. (PubMed id 1339348) 2, 3, 4 Koteliansky V.E.... Small J.V. (1992) The phosphorylation of vinculin on tyrosine residues 100 and 1065, mediated by SRC kinases, affects cell spreading. (PubMed id 15229287) 1, 3, 4 Zhang Z....Haimovich B. (2004) Human alpha-synemin interacts directly with vinculin and metavinculin. (PubMed id 18028034) 1, 3, 4 Sun N....Robson R.M. (2008) Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy. (PubMed id 16236538) 1, 3, 4 Vasile V.C....Ackerman M.J. (2006) A missense mutation in a ubiquitously expressed protein, vinculin, confers susceptibility to hypertrophic cardiomyopathy. (PubMed id 16712796) 1, 3, 4 Vasile V.C.... Ackerman M.J. (2006) Structural basis for amplifying vinculin activation by talin. (PubMed id 15070891) 1, 3, 4 Izard T. and Vonrhein C. (2004) Vinculin activation by talin through helical bundle conversion. (PubMed id 14702644) 1, 3, 4 Izard T.... Bois P.R.J. (2004) Complete sequence of human vinculin and assignment of the gene to chromosome 10. (PubMed id 2116004) 1, 3, 4 Weller P.A.... Critchley D.R. (1990) Organization of the human gene encoding the cytoskeletal protein vinculin and the sequence of the vinculin promoter. (PubMed id 8440716) 1, 3, 4 Moiseyeva E.P.... Critchley D.R. (1993) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006)
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Genome Databases showing VCL
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing VCL
(According to HUGE )
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Specialized Databases showing VCL (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for VCL (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for VCL:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009