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Aliases for VCAN-AS1 Gene

Subcategory (RNA class) for VCAN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VCAN-AS1 Gene

  • VCAN Antisense RNA 1 2 3 5
  • VCAN Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-348L14.1 3

External Ids for VCAN-AS1 Gene

Previous GeneCards Identifiers for VCAN-AS1 Gene

  • GC00U933247
  • GC05M082828

Summaries for VCAN-AS1 Gene

GeneCards Summary for VCAN-AS1 Gene

VCAN-AS1 (VCAN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VCAN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VCAN-AS1 Gene

Genomics for VCAN-AS1 Gene

GeneHancer (GH) Regulatory Elements for VCAN-AS1 Gene

Promoters and enhancers for VCAN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I083509 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.8 +71.4 71440 1.4 ATF1 ZBTB6 ZBTB21 JUN ZNF223 MZF1 CEBPG FEZF1 ZNF664 ZNF213 VCAN-AS1 VCAN
GH05I083539 Enhancer 0.6 Ensembl dbSUPER 11.5 +42.0 42019 0.2 REST RUNX3 VCAN-AS1 VCAN
GH05I083551 Enhancer 0.5 FANTOM5 ENCODE 12.5 +29.2 29181 0.8 FOS VCAN-AS1 VCAN
GH05I083552 Enhancer 0.3 ENCODE 17 +28.0 27981 1.1 JUND VCAN-AS1 VCAN
GH05I083531 Enhancer 0.4 dbSUPER 11.4 +49.5 49518 1.4 PRDM6 POLR2A VCAN-AS1 VCAN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VCAN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VCAN-AS1 Gene

Genomic Locations for VCAN-AS1 Gene
chr5:83,507,040-83,581,320
(GRCh38/hg38)
Size:
74,281 bases
Orientation:
Minus strand
chr5:82,827,171-82,877,139
(GRCh37/hg19)

Genomic View for VCAN-AS1 Gene

Genes around VCAN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VCAN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VCAN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VCAN-AS1 Gene

Proteins for VCAN-AS1 Gene

Post-translational modifications for VCAN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VCAN-AS1 Gene

Domains & Families for VCAN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VCAN-AS1 Gene

Function for VCAN-AS1 Gene

Phenotypes From GWAS Catalog for VCAN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VCAN-AS1 Gene

Localization for VCAN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VCAN-AS1 Gene

Pathways & Interactions for VCAN-AS1 Gene

SuperPathways for VCAN-AS1 Gene

No Data Available

Interacting Proteins for VCAN-AS1 Gene

Gene Ontology (GO) - Biological Process for VCAN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VCAN-AS1 Gene

Drugs & Compounds for VCAN-AS1 Gene

No Compound Related Data Available

Transcripts for VCAN-AS1 Gene

mRNA/cDNA for VCAN-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VCAN-AS1 Gene

No ASD Table

Relevant External Links for VCAN-AS1 Gene

GeneLoc Exon Structure for
VCAN-AS1
ECgene alternative splicing isoforms for
VCAN-AS1

Expression for VCAN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VCAN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VCAN-AS1 Gene

This gene is overexpressed in Artery - Aorta (x8.1), Whole Blood (x7.7), and Artery - Coronary (x7.4).
genes like me logo Genes that share expression patterns with VCAN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VCAN-AS1 Gene

Orthologs for VCAN-AS1 Gene

Evolution for VCAN-AS1 Gene

ENSEMBL:
Gene Tree for VCAN-AS1 (if available)
TreeFam:
Gene Tree for VCAN-AS1 (if available)

No data available for Orthologs for VCAN-AS1 Gene

Paralogs for VCAN-AS1 Gene

No data available for Paralogs for VCAN-AS1 Gene

Variants for VCAN-AS1 Gene

Sequence variations from dbSNP and Humsavar for VCAN-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs113014073 benign, not specified, Wagner syndrome, Vitreoretinopathy 83,542,078(-) G/A/C intron_variant
rs113659987 benign, not specified, Wagner syndrome, Vitreoretinopathy 83,539,126(-) C/T intron_variant
rs113965318 benign, not specified, Wagner syndrome, Vitreoretinopathy 83,538,158(-) A/T intron_variant
rs138599596 likely-benign, Wagner syndrome, Vitreoretinopathy 83,538,205(-) G/A intron_variant
rs138937534 likely-benign, Wagner syndrome, Vitreoretinopathy 83,539,130(-) G/A intron_variant

Additional Variant Information for VCAN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VCAN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VCAN-AS1 Gene

Disorders for VCAN-AS1 Gene

Additional Disease Information for VCAN-AS1

No disorders were found for VCAN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VCAN-AS1 Gene

Publications for VCAN-AS1 Gene

No publications were found for VCAN-AS1 Gene.

Products for VCAN-AS1 Gene

Sources for VCAN-AS1 Gene

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