Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VCAN-AS1 Gene

Subcategory (RNA class) for VCAN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for VCAN-AS1 Gene

  • VCAN Antisense RNA 1 2 3 5
  • VCAN Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-348L14.1 3

External Ids for VCAN-AS1 Gene

Previous GeneCards Identifiers for VCAN-AS1 Gene

  • GC00U933247
  • GC05M082828

Summaries for VCAN-AS1 Gene

GeneCards Summary for VCAN-AS1 Gene

VCAN-AS1 (VCAN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VCAN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VCAN-AS1 Gene

Genomics for VCAN-AS1 Gene

Regulatory Elements for VCAN-AS1 Gene

Enhancers for VCAN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H083095 1.3 Ensembl ENCODE 14.6 +484.1 484138 3.8 PKNOX1 ZNF133 FEZF1 GLI4 ZNF2 GLIS2 ZNF302 ATF7 KLF7 FOS XRCC4 ATP6AP1L VCAN-AS1 RPL13AP14 RPS23 SCARNA18 LOC105379052 TMEM167A RPL13P9
GH05H083509 1.3 Ensembl ENCODE dbSUPER 10.8 +71.4 71440 1.4 ATF1 ZBTB21 JUN ZNF223 FEZF1 CEBPG ZNF664 ZNF302 ZBTB48 ZNF366 VCAN-AS1 VCAN
GH05H083539 0.7 Ensembl dbSUPER 11.5 +42.0 42020 0.2 REST RUNX3 VCAN-AS1 VCAN
GH05H083551 0.6 FANTOM5 ENCODE 12.5 +29.2 29182 0.8 FOS VCAN-AS1 VCAN
GH05H083552 0.4 ENCODE 17 +28.0 27981 1.1 JUND VCAN-AS1 VCAN
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VCAN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VCAN-AS1 Gene

Genomic Locations for VCAN-AS1 Gene
74,281 bases
Minus strand

Genomic View for VCAN-AS1 Gene

Genes around VCAN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VCAN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VCAN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VCAN-AS1 Gene

Proteins for VCAN-AS1 Gene

Post-translational modifications for VCAN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VCAN-AS1 Gene

Domains & Families for VCAN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VCAN-AS1 Gene

Function for VCAN-AS1 Gene

Phenotypes From GWAS Catalog for VCAN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VCAN-AS1 Gene

Localization for VCAN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VCAN-AS1 Gene

Pathways & Interactions for VCAN-AS1 Gene

SuperPathways for VCAN-AS1 Gene

No Data Available

Interacting Proteins for VCAN-AS1 Gene

Gene Ontology (GO) - Biological Process for VCAN-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for VCAN-AS1 Gene

Drugs & Compounds for VCAN-AS1 Gene

No Compound Related Data Available

Transcripts for VCAN-AS1 Gene

mRNA/cDNA for VCAN-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VCAN-AS1 Gene

No ASD Table

Relevant External Links for VCAN-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for VCAN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VCAN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VCAN-AS1 Gene

This gene is overexpressed in Artery - Aorta (x8.1), Whole Blood (x7.7), and Artery - Coronary (x7.4).
genes like me logo Genes that share expression patterns with VCAN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VCAN-AS1 Gene

Orthologs for VCAN-AS1 Gene

Evolution for VCAN-AS1 Gene

Gene Tree for VCAN-AS1 (if available)
Gene Tree for VCAN-AS1 (if available)

No data available for Orthologs for VCAN-AS1 Gene

Paralogs for VCAN-AS1 Gene

No data available for Paralogs for VCAN-AS1 Gene

Variants for VCAN-AS1 Gene

Sequence variations from dbSNP and Humsavar for VCAN-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs397515437 Pathogenic 83,542,270(+) CCAGG(A/T)AAGAT intron-variant, splice-donor-variant
rs80356553 Pathogenic 83,542,269(+) ACCAG(A/G/T)TAAGA intron-variant, splice-donor-variant
rs80356554 Pathogenic 83,537,006(+) TTTCA(A/C/G/T)GTCGA intron-variant, splice-acceptor-variant
rs80356555 Pathogenic 83,537,005(+) TTTTC(A/G/T)GGTCG intron-variant, splice-acceptor-variant
rs80356556 Pathogenic 83,537,002(+) TTTTT(A/C/T)TCAGG intron-variant

Relevant External Links for VCAN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VCAN-AS1 Gene

Disorders for VCAN-AS1 Gene

Relevant External Links for VCAN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for VCAN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VCAN-AS1 Gene

Publications for VCAN-AS1 Gene

No publications were found for VCAN-AS1 Gene.

Products for VCAN-AS1 Gene

Sources for VCAN-AS1 Gene

Loading form....