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Aliases for VAV3-AS1 Gene

Subcategory (RNA class) for VAV3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VAV3-AS1 Gene

  • VAV3 Antisense RNA 1 2 3 5
  • VAV3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VAV3-AS1 Gene

Previous GeneCards Identifiers for VAV3-AS1 Gene

  • GC01P108508

Summaries for VAV3-AS1 Gene

GeneCards Summary for VAV3-AS1 Gene

VAV3-AS1 (VAV3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VAV3-AS1 Gene

Genomics for VAV3-AS1 Gene

Regulatory Elements for VAV3-AS1 Gene

Enhancers for VAV3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F107991 0.2 ENCODE 18.5 +27.4 27375 1.2 HDGF ATF1 PKNOX1 ARNT ZNF766 GATA2 KDM4B NCOA1 REST MBD2 VAV3-AS1 VAV3 ENSG00000226822
GH01F107939 1.6 FANTOM5 Ensembl ENCODE 13 -22.3 -22270 4.7 CTCF ZNF341 CEBPG TRIM24 RAD21 MYC VAV3 VAV3-AS1 MIR7852
GH01F107933 1.5 FANTOM5 Ensembl ENCODE 13 -28.1 -28143 5.4 HDGF PKNOX1 WRNIP1 ZFP64 SIN3A FEZF1 CBX5 FOS ZNF202 JUNB PRPF38B VAV3 VAV3-AS1 MIR7852
GH01F107926 0.2 Ensembl 12.8 -37.1 -37143 1.4 ZBTB48 ZNF692 GLIS1 PRDM10 ZIC2 VAV3 VAV3-AS1 MIR7852
GH01F107919 0.2 Ensembl 12.8 -43.9 -43943 1.8 SCRT2 VAV3 VAV3-AS1 MIR7852
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VAV3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for VAV3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000542204 357 2801 TBL1XR1 ZNF2 ZNF766 GLIS2 ETV6 JUNB ZEB2 ZNF341 IKZF1 PRDM1

Genomic Location for VAV3-AS1 Gene

Chromosome:
1
Start:
107,964,443 bp from pter
End:
107,994,607 bp from pter
Size:
30,165 bases
Orientation:
Plus strand

Genomic View for VAV3-AS1 Gene

Genes around VAV3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VAV3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAV3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAV3-AS1 Gene

Proteins for VAV3-AS1 Gene

Post-translational modifications for VAV3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAV3-AS1 Gene

Domains & Families for VAV3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VAV3-AS1 Gene

Function for VAV3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAV3-AS1 Gene

Localization for VAV3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VAV3-AS1 Gene

Pathways & Interactions for VAV3-AS1 Gene

SuperPathways for VAV3-AS1 Gene

No Data Available

Interacting Proteins for VAV3-AS1 Gene

Gene Ontology (GO) - Biological Process for VAV3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VAV3-AS1 Gene

Transcripts for VAV3-AS1 Gene

mRNA/cDNA for VAV3-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VAV3-AS1 Gene

VAV3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VAV3-AS1 Gene

No ASD Table

Relevant External Links for VAV3-AS1 Gene

GeneLoc Exon Structure for
VAV3-AS1
ECgene alternative splicing isoforms for
VAV3-AS1

Expression for VAV3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VAV3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VAV3-AS1 Gene

This gene is overexpressed in Spleen (x15.1) and Whole Blood (x10.6).

SOURCE GeneReport for Unigene cluster for VAV3-AS1 Gene:

Hs.568676
genes like me logo Genes that share expression patterns with VAV3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VAV3-AS1 Gene

Orthologs for VAV3-AS1 Gene

Evolution for VAV3-AS1 Gene

ENSEMBL:
Gene Tree for VAV3-AS1 (if available)
TreeFam:
Gene Tree for VAV3-AS1 (if available)

No data available for Orthologs for VAV3-AS1 Gene

Paralogs for VAV3-AS1 Gene

No data available for Paralogs for VAV3-AS1 Gene

Variants for VAV3-AS1 Gene

Sequence variations from dbSNP and Humsavar for VAV3-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10881491 -- 107,975,756(+) CAAGA(C/T)ATGAG intron-variant
rs10881492 -- 107,985,761(+) TAACA(C/T)ACACT intron-variant
rs111266222 -- 107,978,773(+) AAAAA(A/G)AAGAA intron-variant
rs111493873 -- 107,980,491(+) CTGTC(C/T)CCACC intron-variant
rs11185219 -- 107,973,545(+) GAAAA(C/T)AGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VAV3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv248n100 CNV gain 25217958
dgv469n54 CNV gain 21841781
nsv1011093 CNV gain 25217958
nsv1078618 CNV deletion 25765185
nsv472134 CNV novel sequence insertion 20440878
nsv524680 CNV gain 19592680

Relevant External Links for VAV3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAV3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VAV3-AS1 Gene

Disorders for VAV3-AS1 Gene

Relevant External Links for VAV3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VAV3-AS1

No disorders were found for VAV3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VAV3-AS1 Gene

Publications for VAV3-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for VAV3-AS1 Gene

Sources for VAV3-AS1 Gene

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