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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

VASH1 Gene

protein-coding   GIFtS: 50
GCID: GC14P077228

vasohibin 1

(Previous name: KIAA1036 )
(Previous symbol: KIAA1036)
 Explore 11 diseases affiliated with
VASH1 via our new
 Human Malady Compendium 
Biological research products
for VASH1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Vasohibin 11 2
KIAA10361 2 3
Vasohibin-11
VASH3

External Ids:    HGNC: 199641   Entrez Gene: 228462   Ensembl: ENSG000000712467   OMIM: 6090115   UniProtKB: Q7L8A93   

Export aliases for VASH1 gene to outside databases

Previous GC identifers: GC14P076299 GC14P057396


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: VASH1_HUMAN, Q7L8A9
Function: Angiogenesis inhibitor. Inhibits migration, proliferation and network formation by endothelial cells as well
as angiogenesis. This inhibitory effect is selective to endothelial cells as it does not affect the migration of
smooth muscle cells or fibroblasts. Does not affect the proliferation of cancer cells in vitro, but inhibits tumor
growth and tumor angiogenesis. Acts in an autocrine manner. Inhibits artery neointimal formation and macrophage
infiltration. Exhibits heparin-binding activity

Gene Wiki entry for VASH1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.1  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the VASH1 gene promoter:
         AhR   Egr-3   Egr-1   MyoD   LUN-1   CUTL1   LCR-F1   Arnt   Egr-4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidVASH1 promoter sequence
   Search SABiosciences Chromatin IP Primers for VASH1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VASH1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q24.3   Ensembl cytogenetic band:  14q24.3   HGNC cytogenetic band: 14q24.3

VASH1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
VASH1 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P077228:  view genomic region     (about GC identifiers)

Start:
77,228,235 bp from pter      End:
77,249,363 bp from pter
Size:
21,129 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: VASH1_HUMAN, Q7L8A9 (See protein sequence)
Recommended Name: Vasohibin-1  
Size: 365 amino acids; 40957 Da
Subcellular location: Secreted
Caution: Although probably secreted, it lacks a canonical signal sequence
Sequence caution: Sequence=AAD44361.1; Type=Erroneous gene model prediction; Sequence=BAA82988.2; Type=Erroneous
initiation;
Secondary accessions: Q96H02 Q9UBF4 Q9Y629
Alternative splicing: 2 isoforms:  Q7L8A9-1   Q7L8A9-2   

Explore the universe of human proteins at neXtProt for VASH1: NX_Q7L8A9

Post-translational modifications:

  • 2 major forms (42 and 36 kDa) and 2 minors (32 and 27 kDa) may be processed by proteolytic cleavage. The largest form
  • (42 kDa) seems to be secreted and the other major form (63 kDa) seems to accumulate within the cells or pericellular
    milieu. Polypeptide consisting of Met-77 to Arg-318 may correspond to the 27 kDa form and that consisting of Met-77 to
    Val-365 may correspond to the 36 kDa form1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q7L8A9

  • VASH1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_055724.1  
    ENSEMBL proteins: 
     ENSP00000167106   ENSP00000451613   ENSP00000451351   ENSP00000451908  

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    Uscn Proteins for VASH1

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IDA--
    GO:0005737cytoplasm IDA15467828
    GO:0005783endoplasmic reticulum IDA15467828
    GO:0045177apical part of cell IDA--


    VASH1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q7L8A9

    UniProtKB/Swiss-Prot: VASH1_HUMAN, Q7L8A9
    Similarity: Belongs to the vasohibin family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: VASH1_HUMAN, Q7L8A9
    Function: Angiogenesis inhibitor. Inhibits migration, proliferation and network formation by endothelial cells as well
    as angiogenesis. This inhibitory effect is selective to endothelial cells as it does not affect the migration of
    smooth muscle cells or fibroblasts. Does not affect the proliferation of cancer cells in vitro, but inhibits tumor
    growth and tumor angiogenesis. Acts in an autocrine manner. Inhibits artery neointimal formation and macrophage
    infiltration. Exhibits heparin-binding activity
    Induction: By VEGF

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    Animal Models:
         Mouse knock-out Vash1tm1Ysat for VASH1
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Vash1):
     cardiovascular system 

    VASH1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VASH1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for VASH1 (Q7L8A93 ENSP000001671064) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CCDC23Q8N3003, ENSP000003615994I2D: score=1 STRING: ENSP00000361599
    About this table

    Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001525angiogenesis IDA15467828
    GO:0001937negative regulation of endothelial cell proliferation IDA19204325
    GO:0007050cell cycle arrest IEA--
    GO:0010596negative regulation of endothelial cell migration IGI--
    GO:0016525negative regulation of angiogenesis IGI--


    VASH1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    VASH1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for VASH1
    1 Novoseek chemical compound relationship for VASH1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    vegf 63.1 22 18486097 (3), 15649403 (2), 17095714 (2), 20035291 (2) (see all 10)

    Search CenterWatch for drugs/clinical trials and news about VASH1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for VASH1 gene: 
    NM_014909.4  

    Unigene Cluster for VASH1:

    Vasohibin 1
    Hs.525479  [show with all ESTs]
    Unigene Representative Sequence: NM_014909
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000167106(uc001xst.2) ENST00000554237(uc001xss.3) ENST00000556967
    ENST00000556038 ENST00000553518 ENST00000554743

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    8/37 QIAGEN miScript miRNA Assays for microRNAs that regulate VASH1 (see all 37):
    hsa-miR-3194-5p hsa-miR-429 hsa-miR-765 hsa-miR-29a hsa-miR-30d hsa-miR-486-3p hsa-miR-30a hsa-miR-1184
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    Additional cDNA sequence: 

    AB028959.1 AF055021.1 AK094330.1 AK291377.1 AL832588.2 BC009031.1 BC051896.1 

    12 DOTS entries:

    DT.453848  DT.311953  DT.425108  DT.70100318  DT.108020  DT.65284442  DT.92430720  DT.100654054 
    DT.100781246  DT.95241664  DT.100781249  DT.95375355 

    24/166 AceView cDNA sequences (see all 166):

    AI694412 BE349025 BE674799 AF055021 CD626309 BU782643 AI338488 BQ233634 
    BU621127 BU731931 BM708077 H08665 AA115240 AI624553 BE222175 AW172651 
    AW206719 BM675057 AI873697 CK725196 AI801580 CA389776 AL041425 AK094330 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    VASH1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGTGTGCTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    VASH1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    HeartOutflow TractHeart
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 5 LifeMap Cells 
    NameCategory
    PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ mesenchymal progenitor 7PEND24 (Embryonic Progenitor Cell)Cartilage, Neural Crest
    PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)Endothelium
    PureStem™ progenitor EN7 (Embryonic Progenitor Cell)
    Definitive endoderm-like cells (Generation of mesend...)

    See VASH1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for VASH1

    SOURCE GeneReport for Unigene cluster: Hs.525479

    UniProtKB/Swiss-Prot: VASH1_HUMAN, Q7L8A9
    Tissue specificity: Preferentially expressed in endothelial cells. Highly expressed in fetal organs. Expressed in brain
    and placenta, and at lower level in heart and kidney. Highly detected in microvessels endothelial cells of
    atherosclerotic lesions

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for VASH1 gene from 4/17 species (see all 17)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Vash11 , 5 vasohibin 11, 5 89.13(n)1
    93.7(a)1
      12 (40.84 cM)5
    2383281  NM_177354.41  NP_796328.21 
     866787005 
    chicken
    (Gallus gallus)
    Aves VASH11 vasohibin 1 83.27(n)
    86.93(a)
      423369  XM_003641364.1  XP_003641412.1 
    lizard
    (Anolis carolinensis)
    Reptilia VASH16
    --
    87(a)
    1 ↔ 1
    1(21397487-21413894)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1000017481 vasohibin-1-like 70.5(n)
    68.97(a)
      100001748  XM_003200403.1  XP_003200451.1 


    ENSEMBL Gene Tree for VASH1 (if available)
    TreeFam Gene Tree for VASH1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for VASH1 gene
    VASH22  
    1 SIMAP similar gene for VASH1 using alignment to 3 protein entries:     VASH1_HUMAN (see all proteins):
    VASH2

    VASH1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/390 NCBI SNPs in VASH1 are shown (see all 390    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs113348051,2
    C,F--57408600(+) GCCTTA/-AAAAA 1 -- int1 trp33Minor allele frequency- -:0.50NA CSA 6
    rs133792091,2
    C,F,H,--77226307(+) TTCATT/AAGACA 1 -- us2k118Minor allele frequency- A:0.07NS EA NA WA CSA 2224
    rs1910883861,2
    --77226350(+) AAAGGA/CATTAG 1 -- us2k10--------
    rs801135951,2
    F,--77226401(+) AATTTT/GAAAAC 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs1495406681,2
    --77226440(+) ATGTAC/TAGAGT 1 -- us2k10--------
    rs1857187611,2
    --77226572(+) TGTTGA/GTCCCT 1 -- us2k10--------
    rs1905399001,2
    --77226573(+) GTTGAC/TCCCTA 1 -- us2k10--------
    rs1431634921,2
    --77226576(+) GATCCC/TTAGTG 1 -- us2k10--------
    rs118475661,2
    C,F,H,--77226654(+) TGGAGT/ACTTGC 1 -- us2k116Minor allele frequency- A:0.17NS EA NA WA 1442
    rs1823832441,2
    --77226692(+) GTTTCC/TGACCC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for VASH1 (77228235 - 77249363 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for VASH1: --

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    VASH1 for disorders           About GeneDecksing

    OMIM gene information: 609011    OMIM disorders: --

    11 diseases for VASH1:    About MalaCards
    pre-eclampsia    severe pre-eclampsia    proliferative diabetic retinopathy    diabetic retinopathy
    female breast carcinoma    eclampsia    breast carcinoma    nephropathy
    endometrial cancer    choroiditis    carcinoma

    1 disease from the University of Copenhagen DISEASES database for VASH1:
    Female breast carcinoma

    1 Novoseek disease relationship for VASH1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0 15 19498005 (4), 19886910 (2), 15467828 (1)


    Export disorders for VASH1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for VASH1 gene, integrated from 9 sources (see all 39):
    (articles sorted by number of sources associating them with VASH1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Vasohibin prevents arterial neointimal formation through angiogenesis inhibition. (PubMed id 16707096)1, 2, 9 Yamashita H.... Sato Y. (2006)
    2. Gene regulation of a novel angiogenesis inhibitor, vasohibin, in endothelial cells. (PubMed id 15649403)1, 2, 9 Shimizu K.... Sato Y. (2005)
    3. Vasohibin as an endothelium-derived negative feedback regulator of angiogenesis. (PubMed id 15467828)1, 2, 9 Watanabe K.... Sato Y. (2004)
    4. Multiple processing forms and their biological activities of a novel angiogenesis inhibitor vasohibin. (PubMed id 16488400)1, 2, 9 Sonoda H.... Sato Y. (2006)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (2003)
    7. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 2 Kikuno R....Ohara O. (1999)
    8. Vasohibin-1 in human breast carcinoma: a potential negative feedback regulator of angiogenesis. (PubMed id 19037993)1, 9 Tamaki K....Sasano H. (2009)
    9. Expression of vasohibin as a novel endothelium-derived angiogenesis inhibitor in endometrial cancer. (PubMed id 18325046)1, 9 Yoshinaga K....Sato Y. (2008)
    10. Inflammatory cytokine-induced expression of vasohibin -1 by rheumatoid synovial fibroblasts. (PubMed id 20035291)1, 9 Miyake K....Makino H. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 22846 HGNC: 19964 AceView: KIAA1036 Ensembl:ENSG00000071246 euGenes: HUgn22846
    ECgene: VASH1 H-InvDB: VASH1

    (According to HUGE)
    About This Section
    HUGE: KIAA1036

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for VASH1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for VASH1 gene:
    Search GeneIP for patents involving VASH1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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