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VAMP8 Gene

protein-coding   GIFtS: 63

GC02P085658
vesicle-associated membrane protein 8 (endobrevin)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
EDB 1, 2, 3
Endobrevin 3
VAMP-8 3
endobrevin 2
Descriptions
vesicle-associated membrane protein 8 2
vesicle-associated membrane protein 8 (endobrevin) 2
External Ids
HGNC: 126471
Entrez Gene: 86732
UniProtKB: Q9BV403
Ensembl: ENSG000001186407
Search outside databases for aliases for VAMP8 gene

Previous GC identifers: GC02P085700 GC02P086098 GC02P085779 GC02P085716

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for VAMP8:
Synaptobrevins/VAMPs, syntaxins, and the 25-kD synaptosomal-associated protein SNAP25 are the main
components of a protein complex involved in the docking and/or fusion of synaptic vesicles with
the presynaptic membrane. The protein encoded by this gene is a member of the vesicle-associated
membrane protein (VAMP)/synaptobrevin family. It is associated with the perinuclear vesicular
structures of the early endocytic compartment. It has been found that VAMP8 interacts specifically
with the soluble NSF-attachment protein (alpha-SNAP), most likely through an VAMP8-containing
SNARE complex. [provided by RefSeq]

UniProtKB/Swiss-Prot: VAMP8_HUMAN, Q9BV40
Function: Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Involved for dense-granule secretion in platelets. Plays a role in regulated enzyme secretion in
pancreatic acinar cells. Involved in the abscission of the midbody during cell division, which
leads to completely separate daughter cells. Involved in the homotypic fusion of early and late
endosomes (By similarity)

Gene Wiki entry for VAMP8 (Vesicle-associated_membrane_protein_8)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the VAMP8 gene  

Entrez Gene cytogenetic band: 2p12-p11.2   Ensembl cytogenetic band:  2p11.2   HGNC cytogenetic band: 2p12-p11.2

VAMP8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P085658:     (about GC identifiers)

Start:
85,658,227 bp from pter
End:
85,662,665 bp from pter
Size:
4,439 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000002.10  NT_022184.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: VAMP8_HUMAN, Q9BV40 (See protein sequence)
Recommended Name: Vesicle-associated membrane protein 8  
Size: 100 amino acids; 11438 Da
Subunit: Found in a number of SNARE complexes with NAPA, SNAP23, SNAP25, STX1A, STX4, STX7, STX8
and VTI1B (By similarity). Interacts with STX8 (By similarity)
Subcellular location: Membrane; Single-pass type IV membrane protein (Probable)
Secondary accessions: O60625 Q53SP9 Q6IB09

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_003752.2  

    ENSEMBL proteins: 
    ENSP00000387094 ENSP00000263864 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Sigma-Aldrich AQUA Peptides for VAMP8  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (VAMP8)
    Human Recombinant Proteins from Abnova (VAMP8)
                  OriGene Purified Recombinant Human Protein: VAMP8 

    4 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005624 membrane fraction TAS9614193
    GO:0005769 early endosome TAS9614193
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    Antibodies for VAMP8: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for VAMP8
    R&D Systems Antibodies for VAMP8 (VAMP-8)
    Antibodies from Abcam (VAMP8), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (VAMP8)
    Novus Biologicals Antibodies for VAMP8

    Assays for VAMP8: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR016444 Synaptobrevin_met/fun
     IPR001388 Synaptobrevin


       GeneDecks  VAMP8 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9BV40

    ProtoNet protein and cluster: Q9BV40

    1 Blocks protein family: IPB001388 Synaptobrevin

    UniProtKB/Swiss-Prot: VAMP8_HUMAN, Q9BV40
    Similarity: Belongs to the synaptobrevin family
    Similarity: Contains 1 v-SNARE coiled-coil homology domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (VAMP8)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003761

                  Applied Biosystems Silencer® siRNAs for VAMP8

                  Sigma-Aldrich siRNA for VAMP8  
                         Sigma-Aldrich shRNA for VAMP8  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for VAMP8
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003761
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003761
                                     untagged cDNA clone in CMV expression vector: NM_003761 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003761

    UniProtKB/Swiss-Prot: VAMP8_HUMAN, Q9BV40
    Function: Involved in the targeting and/or fusion of transport vesicles to their target membrane.
    Involved for dense-granule secretion in platelets. Plays a role in regulated enzyme secretion in
    pancreatic acinar cells. Involved in the abscission of the midbody during cell division, which
    leads to completely separate daughter cells. Involved in the homotypic fusion of early and late
    endosomes (By similarity)

    Genatlas biochemistry entry for VAMP8:
    vesicle associated membrane protein 8,endobrevin,member of the VAMP synaptobrevin protein family
    (soluble N ethylmaleimide-sensitive factor-attachment protein receptor,SNARE protein),associated
    with the early endosome,involved in regulating membrane traffic

    7 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Vamp8):

    digestive/alimentaryendocrine/exocrine glandgrowth/sizehematopoietic systemhomeostasis/metabolism
    immune systemlethality-postnatal

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Kegg Pathway  (Kegg details for VAMP8):
     hsa04130 SNARE interactions in vesicular transport

       GeneDecks  VAMP8 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  VAMP8 


    5/40 Interacting proteins for VAMP8 (ENSP000002638643) via UniProtKB, MINT, and/or STRING (see all 40 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SNAP23ENSP000002496473STRING (score=.999)
    STX4ENSP000003177143STRING (score=.999)
    STX2ENSP000003425543STRING (score=.996)
    STX7ENSP000003096003STRING (score=.972)
    SNAP25ENSP000002549763STRING (score=.968)
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016192 vesicle-mediated transport IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for VAMP8

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (VAMP8)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003761

                  Sigma-Aldrich siRNA for VAMP8  
                         Sigma-Aldrich shRNA for VAMP8  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003761  

    REFSEQ mRNAs for VAMP8 gene: 

    NM_003761.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003761  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003761
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003761
                                     untagged cDNA clone in CMV expression vector: NM_003761 

    Additional cDNA sequence: 

    AF053233.1 BC001634.1 BT006700.1 CR456995.1 CR594380.1 

    13 DOTS entries:

    DT.75123759  DT.101963601  DT.100861790  DT.95201826  DT.91891588  DT.91732827  DT.97780127  DT.121006292 
    DT.92024796  DT.92431989  DT.95201827  DT.87011100  DT.92431991 

    24/316 AceView cDNA sequences (see all 316 ):

    N90862 CR542215 AA361428 AA365845 W80846 AA309787 BM761526 AA371270 
    BM767073 AI419209 AA305331 BQ021316 AA634593 AA836089 BM702226 AI079353 
    NM_006634 BQ675243 BX092149 CR594380 BI836255 CB108371 BQ227618 BM887680 

    highest scoring ESTs for VAMP8:

    AF053233 AI087923 AA165027 AA299296 AA467782 AA469453 AA526368 AA577146 AA630775 AA677095 

    Unigene Cluster for VAMP8:

    Vesicle-associated membrane protein 8 (endobrevin)
    Hs.714302  [show with all ESTs]
    Unigene Representative Sequence: BU199072


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for VAMP8

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d
    SP1:                                                            
    SP2:                                -                           
    SP3:                                -     -                     
    SP4:                                                            

    About this scheme

    ECgene alternative splicing isoforms for VAMP8

    2 Ensembl transcripts including schematic representations:
    ENST00000409760  ENST00000263864  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    VAMP8 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for VAMP8

    1 / 2 / 3

    4 probe-sets matching VAMP8 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    49686_s_at2, 3 U95-C 1 1.00 1.00 0.99 1.12 AI087923 1.00 0.90 0.95 1
    32715_at2, 3 U95-A 1 1.00 1.00 0.99 0.88 AF053233 1.00 0.90 0.95 1

    202546_at2, 3 U133-A 1 1.00 1.00 -- -- NM_003761 0.60 0.83 0.73 1

    202546_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  VAMP8 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGGCTGGGAA

    SOURCE GeneReport for Unigene cluster: Hs.714302

    Expression variation in blood from EXPOLDB for VAMP8

    UniProtKB/Swiss-Prot: VAMP8_HUMAN, Q9BV40
    Tissue specificity: Platelets

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for VAMP8 gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    VAMP81   -- vesicle-associated membrane protein 8 (endobrevin) 92.52(n)
    95.92(a)
    609784  XM_847219.1  XP_852312.1 
    cow
    (Bos taurus)
    VAMP81   -- vesicle-associated membrane protein 8 (endobrevin) 88.54(n)
    94.79(a)
    507309  NM_001034290.1  NP_001029462.1 
    rat
    (Rattus norvegicus)
    Vamp81   -- vesicle-associated membrane protein 8 85.26(n)
    89.47(a)
    83730  NM_031827.1  NP_114015.1 
    mouse
    (Mus musculus)
    Vamp81, 5 6 (31.50 cM)5
    vesicle-associated membrane protein 81, 5 85.91(n)1
    89.69(a)1
    223201  NM_016794.21  NP_058074.21 
     AA0491405  AF0456615  (see all 16)
    zebrafish
    (Danio rerio)
    vamp81   -- vesicle-associated membrane protein 8 (endobrevin) 68.58(n)
    68.97(a)
    327007  NM_199759.1  NP_956053.1 
    About this table        Species with no ortholog for VAMP8

    ENSEMBL Gene Tree for VAMP8
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for VAMP8 gene
    VAMP52  VAMP42  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/44 NCBI SNPs in VAMP8 are shown (see all 44 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 40)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 2 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs10585881,2
    A,C,F,H85662382(+) CTTCTC/TTTCAG 1 -- ut31 ese3 trp39Minor allele frequency- T:0.39EA MN NA EU WA 1854
    rs101666121,2
    A,C,F,H85657607(+) CCAGAA/GCTTTC 1 -- ng517Minor allele frequency- G:0.09EU EA WA NA 562
    rs67572631,2
    A,C,F,H85657053(+) TCCTCC/TGATCA 1 -- ng5113Minor allele frequency- T:0.49EU EA WA NA 1160
    rs134260381,2
    A,C,F,H85656909(+) TGTTCG/CTTCCC 1 -- ng51 tfbs311Minor allele frequency- C:0.08EU EA WA NA 980
    rs10101,2
    C,F,H85662493(-) ACAACA/GTGGCA 1 -- ut318Minor allele frequency- G:0.46MN NA EU EA WA 744
    rs22899731,2
    F,H85658193(+) AGTTGG/AAGCAA 1 -- ut515Minor allele frequency- A:0.04EA EU WA 1912
    --
    rs134258211,2
    A,C85656753(+) tgcagG/Tgtgct 1 -- ng510--------
    rs12548991,2
    C,O85658051(-) TAGGGC/TTCTCA 1 -- ng511Minor allele frequency- T:0.00MN 184
    --
    rs10111,2
    C85662247(-) TTTTTC/TGGAGC 2 R/Q R/R fra10--------
    rs10586151,2
    H85662542(+) AAAAAG/AAGAGA 1 -- ut31 trp35Minor allele frequency- A:0.00MN EU EA WA 604
    About this table

    HapMap Linkage Disequilibrium images for VAMP8 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 603177

    Genetic Association Database: VAMP8
    Human Genome Epidemiology Navigator: VAMP8 (6 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/41 PubMed articles for VAMP8 gene (see all 41 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 8673 HGNC: 12647 AceView: VAMP8andVAMP5 Ensembl:ENSG00000118640 euGenes: HUgn8673
    ECgene: VAMP8 H-InvDB: VAMP8
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for VAMP8:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Explore super-pooled esiRNAs Proteins for VAMP8
     Lentivirus-delivered shRNAs for VAMP8 Browse small molecules at Sigma-Aldrich
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     Validated SYBR primer pairs
     Purified proteins from HEK293T cells
     Western blot validated antibodies
     shRNA in GFP-retroviral vector
     Search Tocris compounds for VAMP8




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for VAMP8

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