VAMP5 Gene
protein-coding GIFtS : 55
GCID: GC02 P085811
vesicle-associated membrane protein 5
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Aliasesfor VAMP5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Vesicle-Associated Membrane Protein 5 1 2 VAMP-52 3 Myobrevin3 Myobrevin3
Export aliases for VAMP5 gene to outside databases Previous GC identifers: GC02P085706 GC02P086105 GC02P085786 GC02P085723 GC02P085665 GC02P085708
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Summariesfor VAMP5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for VAMP5 : Synaptobrevins/VAMPs, syntaxins, and the 25-kD synaptosomal-associated protein are the main components of a protein complex involved in the docking and/or fusion of vesicles and cell membranes. The VAMP5 gene is a member of the vesicle-associated membrane protein (VAMP)/synaptobrevin family and the SNARE superfamily. This VAMP family member may participate in vesicle trafficking events that are associated with myogenesis. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: VAMP5_HUMAN, O95183 Function : May participate in trafficking events that are associated with myogenesis, such as myoblast fusion and/orGLUT4 trafficking
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Genomic Viewsfor VAMP5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_022184.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the VAMP5 gene promoter: c-Fos AP-1 JunB Fra-1 FosB JunD FOXC1 E2F-1 Msx-1 c-Jun Other transcription factors Search SABiosciences Chromatin IP Primers for VAMP5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VAMP5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p11.2 Ensembl cytogenetic band: 2p11.2 HGNC cytogenetic band: 2p11.2 VAMP5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P085811: view genomic region
(about GC identifiers )
Start:
85,811,531 bp from pter
End:
85,820,535 bp from pter
Size:
9,005 bases
Orientation:
plus strand
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Proteinsfor VAMP5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: VAMP5_HUMAN, O95183 (See
protein sequence )Recommended Name: Vesicle-associated membrane protein 5 Size : 116 amino acids; 12805 Da
Subcellular location : Cell membrane; Single-pass type IV membrane protein (Probable). Endomembrane system; Single-passtype IV membrane protein (Probable). Golgi apparatus, trans-Golgi network membrane; Single-pass type IV membrane protein (Probable). Note=Associated with the plasma membrane as well as intracellular perinuclear and peripheral vesicular structures of myotubes. Associated with the trans-Golgi, but not with the cis-Golgi apparatus (By similarity)
Secondary accessions : Q9P0T2Explore the universe of human proteins at neXtProt for VAMP5: NX_O95183 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O95183 VAMP5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_006625.1 ENSEMBL proteins: ENSP00000305647 Human Recombinant Protein Products: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
VAMP5 for ontologies About GeneDecksing VAMP5 Antibody Products: Assay Products for VAMP5:
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Protein
Domains / Familiesfor VAMP5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
VAMP5 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O95183 ProtoNet protein and cluster: O95183
1 Blocks protein family : IPB001388 Synaptobrevin UniProtKB/Swiss-Prot: VAMP5_HUMAN, O95183 Similarity : Belongs to the synaptobrevin familySimilarity : Contains 1 v-SNARE coiled-coil homology domain
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Functionfor VAMP5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: VAMP5_HUMAN, O95183 Function : May participate in trafficking events that are associated with myogenesis, such as myoblast fusion and/orGLUT4 trafficking Induction : During myogenesis
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: VAMP5 (NM_006634 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VAMP5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VAMP5
1 GenomeRNAi human phenotype for VAMP5 :
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Pathways & Interactionsfor VAMP5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Nicotine Pathway (Dopaminergic Neuron), Pharmacodynamics
Pathway sources See GeneCards unified pathways Show all pathways 1 PharmGKB Pathway for VAMP5 1
Kegg Pathway (Kegg details for VAMP5) :
VAMP5 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VAMP5 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for VAMP5 (ENSP00000305647 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5 biological process terms (GO ID links to tree view) : About this table
VAMP5 for ontologies About GeneDecksing
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Drugs & Compoundsfor VAMP5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for VAMP5 Search CenterWatch for drugs/clinical trials and news about VAMP5
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Transcriptsfor VAMP5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for VAMP5 gene: NM_006634.2 Unigene Cluster for VAMP5:
Vesicle-associated membrane protein 5 Hs.534373 [show with all ESTs ] Unigene Representative Sequence: BE618868 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000306384 (uc002spu.1 ) ENST00000462451 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: VAMP5 (NM_006634 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VAMP5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VAMP5
Additional cDNA sequence: AF054825.1 AF077197.1 AF151025.1 AK292660.1 BC017891.1 CR542215.1
11 DOTS entries : DT.314218 DT.100748293
DT.100881723 DT.121152203 DT.121152226 DT.100881736 DT.121627652 DT.91772578 DT.100881733 DT.100881747 DT.92431991 24/316 AceView cDNA sequences (see all 316 ):
AA176219 BC017891 CR542215 BM887680 AI418592 CD369345 AA634593 AI568721 AA305331 D19625 BQ227618 AI419209 BI836255 BQ021316 AF077197 BX113655 BM702226 BX092149 W80846 BM767073 AA309787 AA365845 N90862 AI079353 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for VAMP5 About this scheme ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c SP1 :     -           SP2 :     -           SP3 :              
ECgene alternative splicing isoforms for VAMP5
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Expression for VAMP5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section VAMP5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTGGGCCAGC
About this image VAMP5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See VAMP5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for VAMP5 SOURCE GeneReport for Unigene cluster: Hs.534373 SABiosciences Custom PCR Arrays for VAMP5 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VAMP5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat VAMP5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VAMP5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VAMP5
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Orthologsfor VAMP5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for VAMP5 gene from 3/17 species (see all 17 ) About this table
ENSEMBL Gene Tree for VAMP5 (if available)TreeFam Gene Tree for VAMP5 (if available)
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Paralogsfor VAMP5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for VAMP5 gene VAMP2 2 VAMP1 2 VAMP8 2 VAMP3 2 VAMP4 2 ENSG00000263620 2 6 SIMAP similar genes for VAMP5 using alignment to 2 protein entries: VAMP5_HUMAN (see all proteins ):VAMP4 VAMP8 VAMP2 VAMP3 VAMP1 SYBL1
VAMP5 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for VAMP5 PGOHUM00000237420
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Genomic Variantsfor VAMP5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for VAMP5 (85811531 - 85820535 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for VAMP5: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VAMP5
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Disorders
/ Diseasesfor VAMP5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
VAMP5 for disorders About GeneDecksing
OMIM gene information: 607029
OMIM disorders : --5 diseases for VAMP5 : About MalaCards open-angle glaucoma primary open anle glaucoma primary open angle glaucoma glaucoma malaria Genetic Association Database (GAD): VAMP5 Human Genome Epidemiology (HuGE) Navigator: VAMP5 (12 documents) Export disorders for VAMP5 gene to outside databases
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Publicationsfor VAMP5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for VAMP5 gene integrated from 9 sources : (articles sorted by number of sources associating them with VAMP5) Utopia : connect your pdf to the dynamic world of online information
A novel synaptobrevin/VAMP homologous protein (VAMP5) is increased during in vitro myogenesis and present in the plasma membrane. (PubMed id 9725904) 1 , 2 , 3, 9 Zeng Q.... Hong W. (1998) VAMP5 and VAMP8 are most likely not involved in primary open-angle glaucoma. (PubMed id 16110299) 1 , 4 Brinkman J.F....Bergen A.A. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152) 1 , 2 Zhang Q.-H.... Chen Z. (2000) Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724) 1 Udeshi N.D....Carr S.A. (2012) Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118) 1 Woods N.T....Monteiro A.N. (2012) Seven prostate cancer susceptibility loci identified b y a multi-stage genome-wide association study. (PubMed id 21743467) 1 Kote-Jarai Z.... . (2011) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) The cytoplasmic domain of Vamp4 and Vamp5 is responsible for their correct subcellular targeting: the N-terminal extenSion of VAMP4 contains a dominant autonomous targeting signal for the trans-Golgi network. (PubMed id 12682051) 1 Zeng Q....Hong W. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for VAMP5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing VAMP5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing VAMP5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing VAMP5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for VAMP5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for VAMP5 gene: Search GeneIP for patents involving VAMP5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor VAMP5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for VAMP5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for VAMP5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for VAMP5 OriGene Protein Over-expression Lysate for VAMP5 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for VAMP5 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for VAMP5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for VAMP5 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for VAMP5 OriGene Custom Protein Services for VAMP5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat VAMP5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing VAMP5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat VAMP5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat VAMP5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat VAMP5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat VAMP5
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Recombinant Protein for VAMP5
VAMP5 Proteins, Antibodies, CLIAs, and ELISAs
ThermoFisher Antibody for VAMP5
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat VAMP5
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Aliases for VAMP5
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Disorders / Diseases for VAMP5
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Expression for VAMP5
Function for VAMP5
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Transcripts for VAMP5
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