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VAMP2 Gene

protein-coding   GIFtS: 59

GC17M007987
vesicle-associated membrane protein 2 (synaptobrevin 2)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: SYB2)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
FLJ11460 2
SYB2 2, 3, 5
Synaptobrevin-2 3
VAMP-2 1, 2, 3
Descriptions
synaptobrevin 2 2
vesicle associated membrane protein 2 2
vesicle-associated membrane protein 2 (synaptobrevin 2) 2
External Ids
HGNC: 126431
Entrez Gene: 68442
UniProtKB: P630273
Ensembl: ENSG000001790367
Search outside databases for aliases for VAMP2 gene

Previous GC identifers: GC17U990100 GC17M009150 GC17M008005 GC17M008263

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for VAMP2:
The protein encoded by this gene is a member of the vesicle-associated membrane protein
(VAMP)/synaptobrevin family. Synaptobrevins/VAMPs, syntaxins, and the 25-kD
synaptosomal-associated protein SNAP25 are the main components of a protein complex involved in
the docking and/or fusion of synaptic vesicles with the presynaptic membrane. This gene is thought
to participate in neurotransmitter release at a step between docking and fusion. The protein forms
a stable complex with syntaxin, synaptosomal-associated protein, 25 kD, and synaptotagmin. It also
forms a distinct complex with synaptophysin. It is a likely candidate gene for familial infantile
myasthenia (FIMG) because of its map location and because it encodes a synaptic vesicle protein of
the type that has been implicated in the pathogenesis of FIMG. [provided by RefSeq]

UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027
Function: Involved in the targeting and/or fusion of transport vesicles to their target membrane

Gene Wiki entry for VAMP2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the VAMP2 gene  

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17pter-p12

VAMP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M007987:     (about GC identifiers)

Start:
8,003,146 bp from pter
End:
8,007,017 bp from pter
Size:
3,872 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000017.9  NT_010718.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027 (See protein sequence)
Recommended Name: Vesicle-associated membrane protein 2  
Size: 116 amino acids; 12649 Da
Subunit: Interacts with VAPA and VAPB
Subcellular location: Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane;
Single-pass type IV membrane protein. Cell junction, synapse, synaptosome. Note=Neuronal synaptic
vesicles
Secondary accessions: P19065

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_055047.2  

    ENSEMBL proteins: 
    ENSP00000379599 ENSP00000385595 ENSP00000379602 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Sigma-Aldrich AQUA Peptides for VAMP2  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (VAMP2, Synaptobrevin)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005887 integral to plasma membrane TAS1976629
    GO:0016020 membrane IEA--
    GO:0019717 synaptosome IEA--
    GO:0030054 cell junction IEA--
    GO:0031410 cytoplasmic vesicle IEA--
    About this table

    Antibodies for VAMP2: 
    Browse Antibodies Central at Invitrogen
    Millipore Mono- and Polyclonal Antibodies for the study of VAMP2
    Sigma-Aldrich Antibodies for VAMP2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (VAMP2, Synaptobrevin), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (VAMP2)
    Novus Biologicals Antibodies for VAMP2

    Assays for VAMP2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR016444 Synaptobrevin_met/fun
     IPR001388 Synaptobrevin


       GeneDecks  VAMP2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P63027

    ProtoNet protein and cluster: P63027

    1 Blocks protein family: IPB001388 Synaptobrevin

    UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027
    Similarity: Belongs to the synaptobrevin family
    Similarity: Contains 1 v-SNARE coiled-coil homology domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (VAMP2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014232

                  Applied Biosystems Silencer® siRNAs for VAMP2

                  Sigma-Aldrich siRNA for VAMP2  
                         Sigma-Aldrich shRNA for VAMP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for VAMP2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_014232
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_014232
                                     untagged cDNA clone in CMV expression vector: NM_014232 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_014232

    UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027
    Function: Involved in the targeting and/or fusion of transport vesicles to their target membrane

    Genatlas biochemistry entry for VAMP2:
    vesicule associated membrane protein 2,synaptobrevin 2,expressed in neurons forming a synaptic core
    complex with syntaxin and synaptosome associated proteins,playing a central role in neural
    exocytosis,soluble N ethylmaleimide-sensitive factor-attachment protein receptor,SNARE protein

    8 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Vamp2):

    endocrine/exocrine glandgrowth/sizehematopoietic systemimmune systemlethality-postnatal
    lethality-prenatal/perinatalnervous systemnormal

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI9920726
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for VAMP2
     Clathrin-dependent protein traffic

       GeneDecks  VAMP2 for the pathways selected above  
    About GeneDecksing

    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  VAMP2  (Your Favorite Gene powered by Ingenuity) 
     Insulin Receptor Signaling

       GeneDecks  VAMP2 for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for VAMP2):
     hsa04130 SNARE interactions in vesicular transport

       GeneDecks  VAMP2 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  VAMP2 


    1 Interacting protein for VAMP2 (P630271) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PRKD3O948061EBI-520113, EBI-1255366
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016192 vesicle-mediated transport IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for VAMP2
    7 Novoseek chemical compound relationships for VAMP2 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    glucose 38.87 13 15537656 (3), 8772493 (2), 10713150 (1), 11208137 (1) (see all 9)
    phosphatidylinositol 21.77 1 11297538 (1)
    phorbol 18.37 2 11162495 (1), 11263991 (1)
    calcium 0.36 4 15846778 (1), 18715899 (1), 17204559 (1), 15028755 (1)
    hydrogen 0.00 1 17311420 (1)
    lipid 0.00 3 15073181 (1), 16439800 (1), 12376543 (1)
    tyrosine 0.00 1 16018556 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (VAMP2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014232

                  Sigma-Aldrich siRNA for VAMP2  
                         Sigma-Aldrich shRNA for VAMP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_014232  

    REFSEQ mRNAs for VAMP2 gene: 

    NM_014232.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_014232  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_014232
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_014232
                                     untagged cDNA clone in CMV expression vector: NM_014232 

    Additional cDNA sequence: 

    AJ225044.1 AK021522.1 AK225777.1 AK289555.1 AL050223.1 BC002737.2 BC019608.1 BC033870.1 
    BC150138.1 

    15 DOTS entries:

    DT.40107989  DT.100794299  DT.448468  DT.91787682  DT.95353896  DT.65287860  DT.100794300  DT.100794301 
    DT.98081774  DT.75161839  DT.75180389  DT.92426527  DT.95149295  DT.95170329  DT.91766472 

    24/455 AceView cDNA sequences (see all 455 ):

    AA490787 AI804192 AI815549 F08744 BM717200 AA971398 AA864450 AA909154 
    BM511675 H84469 BQ269273 BM849581 BM021268 H27871 BM671785 AL549959 
    BU729490 CD514276 BU740280 F04440 BM141929 H92470 BX508108 AK021522 

    highest scoring ESTs for VAMP2:

    AI815549 AL050223 BC002737 BC019608 BC033870 BE382373 BG707935 BG708134 BG708156 BG713895 

    Unigene Cluster for VAMP2:

    Vesicle-associated membrane protein 2 (synaptobrevin 2)
    Hs.25348  [show with all ESTs]
    Unigene Representative Sequence: NM_014232


    GeneLoc Exon Structure

    3 Ensembl transcripts including schematic representations:
    ENST00000396305  ENST00000404970  ENST00000396308  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    VAMP2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for VAMP2

    1 / 2 / 3

    7 probe-sets matching VAMP2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32254_at2, 3 U95-A 2 1.00 0.50 1.00 1.00 AL050223 0.80 1.00 0.91 1

    214792_x_at2, 3 U133-A 2 1.00 0.55 -- -- AI955119 0.40 1.00 0.76 1

    201557_at2, 3 U133-A 2 1.00 0.50 -- -- NM_014232 0.60 1.00 0.82 1

    201556_s_at2, 3 U133-A 2 1.00 0.50 -- -- BC002737 0.80 1.00 0.91 1

    214792_x_at2 U133Plus2 2 1.00 0.55 -- -- -- -- -- -- --

    201557_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --

    201556_s_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CCCCCAATTC

    SOURCE GeneReport for Unigene cluster: Hs.25348

    Expression variation in blood from EXPOLDB for VAMP2

    UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027
    Tissue specificity: Nervous system and skeletal muscle

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for VAMP2 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    VAMP21   -- vesicle-associated membrane protein 2 (synaptobrevin more 96.55(n)
    100(a)
    479491  XM_536630.2  XP_536630.2 
    chimpanzee
    (Pan troglodytes)
    VAMP21   -- vesicle-associated membrane protein 2 (synaptobrevin more 99.43(n)
    99.14(a)
    747237  XM_001156324.1  XP_001156324.1 
    cow
    (Bos taurus)
    VAMP21   -- vesicle-associated membrane protein 2 (synaptobrevin more 94.54(n)
    100(a)
    282116  NM_174483.2  NP_776908.1 
    rat
    (Rattus norvegicus)
    Vamp21   -- vesicle-associated membrane protein 2 93.39(n)
    98.28(a)
    24803  NM_012663.2  NP_036795.1 
    mouse
    (Mus musculus)
    Vamp21, 5 115
    vesicle-associated membrane protein 21, 5 93.97(n)1
    98.28(a)1
    223181  NM_009497.31  NP_033523.11 
     AF0071685  AI8386015  (see all 11)
    About this table        Species with no ortholog for VAMP2

    ENSEMBL Gene Tree for VAMP2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for VAMP2 gene
    VAMP12  VAMP32  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/35 NCBI SNPs in VAMP2 are shown (see all 35 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 48)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 17 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs98995331,2
    A,C,F,H8008770(+) GTCTTG/CAAATG 1 -- ng318Minor allele frequency- C:0.45EU EA WA 830
    rs11501,2
    A,C,F,H8003308(+) GTCTAG/AAACAC 1 -- ut31 ese34Minor allele frequency- A:0.41EU EA WA 400
    rs22786371,2
    A,C,F,H8002827(+) GCCACT/GGCAGA 1 -- ng515Minor allele frequency- G:0.46EA EU WA 1890
    rs80676061,2
    A,C,F,H8007508(+) ACCTTG/ACTGCT 1 -- ng314Minor allele frequency- A:0.42EU EA WA 416
    --
    rs10610321,2
    A,C,F,H8004808(-) CCCCCC/ACTCCC 1 -- ut31 ese36Minor allele frequency- A:0.21MN EU EA WA 776
    --
    rs80665131,2
    A,C,H8007166(+) CGCCAC/TCATGC 1 -- ng314Minor allele frequency- T:0.00EU EA WA 420
    rs9593031,2
    A,C,F8002924(+) GACCAT/CAGGGC 1 -- ng512Minor allele frequency- C:0.43MN EA 1478
    rs118684101,2
    C8006356(+) GTGCAA/GGGGGA 1 P/L mis1 ese30--------
    --
    rs10516671,2
    F8003422(-) GGGGGC/GCCCCA 1 -- ut31 ese31Minor allele frequency- G:0.10MN 184
    --
    rs80665111,2
    A8007158(+) GGGCCC/TCGCGC 1 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for VAMP2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 185881

    2 Novoseek disease relationships for VAMP2 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tetanus 79.03 45 11068046 (3), 10888677 (2), 7560075 (2), 18511417 (2) (see all 30)
    insulinoma 13.99 2 12887316 (1), 11502551 (1)
    About this table

    Human Genome Epidemiology Navigator: VAMP2 (4 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/228 PubMed articles for VAMP2 gene (see all 228 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 6844 HGNC: 12643 AceView: VAMP2 Ensembl:ENSG00000179036 euGenes: HUgn6844
    ECgene: VAMP2 H-InvDB: VAMP2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for VAMP2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for VAMP2

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