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Aliases & Descriptions for VAMP2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ11460 2 | | SYB2 2, 3, 5 | | Synaptobrevin-2 3 | | VAMP-2 1, 2, 3 |
| | | Descriptions |
|---|
| synaptobrevin 2 2 | | vesicle associated membrane protein 2 2 | | vesicle-associated membrane protein 2 (synaptobrevin 2) 2 |
|
| | Search outside databases for aliases for VAMP2 genePrevious GC identifers: GC17U990100 GC17M009150 GC17M008005 GC17M008263 |
Summaries for VAMP2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for VAMP2: The protein encoded by this gene is a member of the vesicle-associated membrane protein (VAMP)/synaptobrevin family. Synaptobrevins/VAMPs, syntaxins, and the 25-kD synaptosomal-associated protein SNAP25 are the main components of a protein complex involved in the docking and/or fusion of synaptic vesicles with the presynaptic membrane. This gene is thought to participate in neurotransmitter release at a step between docking and fusion. The protein forms a stable complex with syntaxin, synaptosomal-associated protein, 25 kD, and synaptotagmin. It also forms a distinct complex with synaptophysin. It is a likely candidate gene for familial infantile myasthenia (FIMG) because of its map location and because it encodes a synaptic vesicle protein of the type that has been implicated in the pathogenesis of FIMG. [provided by RefSeq] UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027Function: Involved in the targeting and/or fusion of transport vesicles to their target membraneGene Wiki entry for VAMP2 |
Genomic Location for VAMP2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the VAMP2 gene 
Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17pter-p12VAMP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17M007987:
(about GC identifiers)
Start:
|
8,003,146 bp from pter |
End:
|
8,007,017 bp from pter |
Size:
|
3,872 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010718.15
| Proteins for VAMP2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027 (See
protein sequence)Recommended Name: Vesicle-associated membrane protein 2 Size: 116 amino acids; 12649 Da
Subunit: Interacts with VAPA and VAPB
Subcellular location: Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane; Single-pass type IV membrane protein. Cell junction, synapse, synaptosome. Note=Neuronal synaptic vesicles
Secondary accessions: P19065Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_055047.2
ENSEMBL proteins: ENSP00000379599 ENSP00000385595 ENSP00000379602
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
): About this table
Antibodies for VAMP2: Assays for VAMP2: | Protein
Domains/ Families for VAMP2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P63027
ProtoNet protein and cluster: P63027 1 Blocks protein family: IPB001388 Synaptobrevin
UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027Similarity: Belongs to the synaptobrevin familySimilarity: Contains 1 v-SNARE coiled-coil homology domain | Gene Function for VAMP2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014232
Applied Biosystems Silencer® siRNAs for VAMP2
Sigma-Aldrich siRNA for VAMP2  Sigma-Aldrich shRNA for VAMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_014232                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_014232                                  untagged cDNA clone in CMV expression vector: NM_014232 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_014232
UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027Function: Involved in the targeting and/or fusion of transport vesicles to their target membraneGenatlas biochemistry entry for VAMP2:vesicule associated membrane protein 2,synaptobrevin 2,expressed in neurons forming a synaptic core complex with syntaxin and synaptosome associated proteins,playing a central role in neural exocytosis,soluble N ethylmaleimide-sensitive factor-attachment protein receptor,SNARE protein8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Vamp2):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for VAMP2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for VAMP2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for VAMP2 
1 Interacting protein for VAMP2 (P630271) via UniProtKB, MINT, and/or STRINGAbout this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016192 | vesicle-mediated transport |
IEA | -- | About this table
|
Drugs & Compounds for VAMP2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for VAMP2 7 Novoseek chemical compound relationships for VAMP2 gene
About this table
|
Transcripts for VAMP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014232
Sigma-Aldrich siRNA for VAMP2  Sigma-Aldrich shRNA for VAMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_014232 REFSEQ mRNAs for VAMP2 gene: NM_014232.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_014232               OriGene GFP tagged cDNA clone in CMV expression vector: NM_014232                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_014232                                  untagged cDNA clone in CMV expression vector: NM_014232  Additional cDNA sequence: AJ225044.1 AK021522.1 AK225777.1 AK289555.1 AL050223.1 BC002737.2 BC019608.1 BC033870.1 BC150138.1 15 DOTS entries: DT.40107989 DT.100794299 DT.448468 DT.91787682 DT.95353896 DT.65287860 DT.100794300 DT.100794301 DT.98081774 DT.75161839 DT.75180389 DT.92426527 DT.95149295 DT.95170329 DT.91766472 24/455 AceView cDNA sequences (see all 455
):AA490787 AI804192 AI815549 F08744 BM717200 AA971398 AA864450 AA909154 BM511675 H84469 BQ269273 BM849581 BM021268 H27871 BM671785 AL549959 BU729490 CD514276 BU740280 F04440 BM141929 H92470 BX508108 AK021522
highest scoring ESTs for VAMP2:AI815549 AL050223 BC002737 BC019608 BC033870 BE382373 BG707935 BG708134 BG708156 BG713895 Unigene Cluster for VAMP2: Vesicle-associated membrane protein 2 (synaptobrevin 2) Hs.25348 [show with all ESTs]Unigene Representative Sequence: NM_014232
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000396305
ENST00000404970
ENST00000396308
|
Expression for VAMP2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| VAMP2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for VAMP2
1 / 2 / 3 7 probe-sets matching VAMP2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCCCCAATTC
SOURCE GeneReport for Unigene cluster: Hs.25348
Expression variation in blood from EXPOLDB for VAMP2 UniProtKB/Swiss-Prot: VAMP2_HUMAN, P63027Tissue specificity: Nervous system and skeletal muscle |
Orthologs for VAMP2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for VAMP2 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for VAMP2
ENSEMBL Gene Tree for VAMP2 | Paralogs for VAMP2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for VAMP2 gene
- VAMP12 VAMP32
|
SNPs/Variants for VAMP2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for VAMP2 (up to first 250kb)
|
Disorders & Mutations for VAMP2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 185881
2 Novoseek disease relationships for VAMP2 gene
About this table
Human Genome Epidemiology Navigator: VAMP2 (4 documents)
|
Medical News for VAMP2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for VAMP2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/228 PubMed articles for VAMP2 gene (see all 228
):- Structures and chromosomal localizations of two human genes encoding synaptobrevins 1 and 2. (PubMed id 1976629)1, 2, 3, 4 Archer B.T. III... Suedhof T.C. (1990)
- Insulin-responsive tissues contain the core complex protein SNAP-25 (synaptosomal-associated protein 25) A and B isoforms in addition to syntaxin 4 and synaptobrevins 1 and 2. (PubMed id 8760387)1, 3, 4 Jagadish M.N....Ward C.W. (1996)
- Cocrystal structure of synaptobrevin-II bound to botulinum neurotoxin type B at 2.0 A resolution. (PubMed id 10932255)3, 4 Hanson M.A. and Stevens R.C. (2000)
- Transport route for synaptobrevin via a novel pathway of insertion into the endoplasmic reticulum membrane. (PubMed id 7835332)3, 4 Kutay U.... Rapoport T.A. (1995)
- Substrate recognition of VAMP-2 by botulinum neurotoxin B and tetanus neurotoxin. (PubMed id 18511417)1, 3 Chen S....Barbieri J.T. (2008)
- Association study between genetic variants at the VAMP2 and VAMP3 loci and bipolar affective disorder. (PubMed id 18628682)1, 3 Abou Jamra R....Schumacher J. (2008)
- Role of vesicle-associated membrane protein-2, through Q-soluble N-ethylmaleimide-sensitive factor attachment protein receptor/R-soluble N-ethylmaleimide-sensitive factor attachment protein receptor interaction, in the exocytosis of specific and tertiary granules of human neutrophils. (PubMed id 12517971)1, 3 Mollinedo F....Lazo P.A. (2003)
- Role of SNAP23 in insulin-induced translocation of GLUT4 in 3T3-L1 adipocytes. Mediation of complex formation between syntaxin4 and VAMP2. (PubMed id 10713150)1, 3 Kawanishi M....Kasuga M. (2000)
- WD-repeat-propeller-FYVE protein, ProF, binds VAMP2 and protein kinase Czeta. (PubMed id 17313651)1, 3 Fritzius T....Moelling K. (2007)
- Evidence for CALM in directing VAMP2 trafficking. (PubMed id 18182011)1, 3 Harel A....Yao P.J. (2008)
|
Search for VAMP2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing VAMP2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing VAMP2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing VAMP2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for VAMP2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for VAMP2:

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