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Aliases for VAC14-AS1 Gene

Subcategory (RNA class) for VAC14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VAC14-AS1 Gene

  • VAC14 Antisense RNA 1 2 3 5

External Ids for VAC14-AS1 Gene

Previous GeneCards Identifiers for VAC14-AS1 Gene

  • GC16P070790

Summaries for VAC14-AS1 Gene

GeneCards Summary for VAC14-AS1 Gene

VAC14-AS1 (VAC14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VAC14-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VAC14-AS1 Gene

Genomics for VAC14-AS1 Gene

GeneHancer (GH) Regulatory Elements for VAC14-AS1 Gene

Promoters and enhancers for VAC14-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I070753 Enhancer 0.4 dbSUPER 550.8 +0.3 287 5.2 MITF USF1 HNF4A VAC14-AS1 MTSS1L FUK ENSG00000279815 VAC14
GH16I070680 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.9 -60.4 -60358 29.2 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ZFP64 ARID4B NEUROD1 SIN3A DMAP1 MTSS1L VAC14-AS1 CLEC18A NPIPB14P NOB1 VAC14 EXOSC6 NQO1 SMG1P7 MARVELD3
GH16I070723 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.4 -29.2 -29154 4.1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 TCF12 ATF7 PIR60732 VAC14-AS1 MTSS1L NPIPB14P ENSG00000260156 VAC14
GH16I070711 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -40.6 -40608 6 PKNOX1 CLOCK FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS ENSG00000279412 PIR61375 ZNF19 ZNF23 VAC14-AS1 FUK NPIPB14P EXOSC6 VAC14 PDXDC2P
GH16I070589 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 10.5 -164.0 -163977 4.5 BCOR KLF1 ZNF362 JUN HLF ZMYM3 ZNF384 HMG20A ATF2 CREB1 IL34 PDXDC2P-NPIPB14P PDXDC2P COG4 SNORD111 AARS VAC14-AS1 DDX19B LOC100506083 NPIPB14P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VAC14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VAC14-AS1 Gene

Genomic Locations for VAC14-AS1 Gene
chr16:70,755,060-70,773,251
(GRCh38/hg38)
Size:
18,192 bases
Orientation:
Plus strand
chr16:70,788,963-70,807,154
(GRCh37/hg19)

Genomic View for VAC14-AS1 Gene

Genes around VAC14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VAC14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAC14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAC14-AS1 Gene

Proteins for VAC14-AS1 Gene

Post-translational modifications for VAC14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAC14-AS1 Gene

Domains & Families for VAC14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VAC14-AS1 Gene

Function for VAC14-AS1 Gene

Phenotypes From GWAS Catalog for VAC14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAC14-AS1 Gene

Localization for VAC14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VAC14-AS1 Gene

Pathways & Interactions for VAC14-AS1 Gene

SuperPathways for VAC14-AS1 Gene

No Data Available

Interacting Proteins for VAC14-AS1 Gene

Gene Ontology (GO) - Biological Process for VAC14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VAC14-AS1 Gene

Drugs & Compounds for VAC14-AS1 Gene

No Compound Related Data Available

Transcripts for VAC14-AS1 Gene

mRNA/cDNA for VAC14-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VAC14-AS1 Gene

No ASD Table

Relevant External Links for VAC14-AS1 Gene

GeneLoc Exon Structure for
VAC14-AS1
ECgene alternative splicing isoforms for
VAC14-AS1

Expression for VAC14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VAC14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VAC14-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.3), Brain - Caudate (basal ganglia) (x4.2), and Brain - Amygdala (x4.0).
genes like me logo Genes that share expression patterns with VAC14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VAC14-AS1 Gene

Orthologs for VAC14-AS1 Gene

Evolution for VAC14-AS1 Gene

ENSEMBL:
Gene Tree for VAC14-AS1 (if available)
TreeFam:
Gene Tree for VAC14-AS1 (if available)

No data available for Orthologs for VAC14-AS1 Gene

Paralogs for VAC14-AS1 Gene

No data available for Paralogs for VAC14-AS1 Gene

Variants for VAC14-AS1 Gene

Sequence variations from dbSNP and Humsavar for VAC14-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs762388639 pathogenic, Striatonigral degeneration, childhood-onset 70,762,915(+) C/A intron_variant
rs1000029975 -- 70,769,107(+) T/C intron_variant
rs1000048326 -- 70,754,653(+) C/A upstream_transcript_variant
rs1000174376 -- 70,759,509(+) T/G intron_variant
rs1000240990 -- 70,765,309(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for VAC14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758653 CNV gain 17122850
esv3892881 CNV gain 25118596
nsv517391 CNV loss 19592680
nsv572945 CNV gain 21841781
nsv7285 OTHER inversion 18451855

Additional Variant Information for VAC14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAC14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VAC14-AS1 Gene

Disorders for VAC14-AS1 Gene

Additional Disease Information for VAC14-AS1

No disorders were found for VAC14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VAC14-AS1 Gene

Publications for VAC14-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for VAC14-AS1 Gene

Sources for VAC14-AS1 Gene

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