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Aliases for VAC14-AS1 Gene

Subcategory (RNA class) for VAC14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VAC14-AS1 Gene

  • VAC14 Antisense RNA 1 2 3 5

External Ids for VAC14-AS1 Gene

Previous GeneCards Identifiers for VAC14-AS1 Gene

  • GC16P070790

Summaries for VAC14-AS1 Gene

GeneCards Summary for VAC14-AS1 Gene

VAC14-AS1 (VAC14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VAC14-AS1 Gene

Genomics for VAC14-AS1 Gene

Regulatory Elements for VAC14-AS1 Gene

Enhancers for VAC14-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F070723 1.1 FANTOM5 Ensembl ENCODE 16.4 -29.2 -29155 4.1 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 ZNF143 FOS PAF1 VAC14-AS1 MTSS1L PDPR NPIPB14P PIR60732 ENSG00000260156
GH16F070709 0.4 Ensembl 12.4 -45.2 -45160 1.0 ZNF316 HNF4G MAFG ZBTB33 RAD21 EMSY YY1 VAC14-AS1 ENSG00000279412 GC16M070687
GH16F070711 0.8 FANTOM5 Ensembl ENCODE 12.3 -40.6 -40608 6.0 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 VAC14-AS1 NPIPB14P EXOSC6 VAC14 PDXDC2P ENSG00000279412 PIR61375
GH16F070779 0.2 ENCODE 12.2 +24.2 24215 1.4 PKNOX1 ATF1 ARID4B SIN3A FEZF1 ZNF2 ZNF121 ZNF302 FOS PAF1 VAC14 VAC14-AS1 PDPR LOC100506083 TRG-GCC2-4 PIR32067
GH16F070680 1.3 FANTOM5 Ensembl ENCODE 11.9 -60.4 -60358 29.2 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 VAC14-AS1 MTSS1L CLEC18A NPIPB14P NOB1 VAC14 EXOSC6 NQO1 SMG1P7 MARVELD3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VAC14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VAC14-AS1 Gene

Chromosome:
16
Start:
70,755,060 bp from pter
End:
70,773,251 bp from pter
Size:
18,192 bases
Orientation:
Plus strand

Genomic View for VAC14-AS1 Gene

Genes around VAC14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VAC14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAC14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAC14-AS1 Gene

Proteins for VAC14-AS1 Gene

Post-translational modifications for VAC14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAC14-AS1 Gene

Domains & Families for VAC14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VAC14-AS1 Gene

Function for VAC14-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAC14-AS1 Gene

Localization for VAC14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VAC14-AS1 Gene

Pathways & Interactions for VAC14-AS1 Gene

SuperPathways for VAC14-AS1 Gene

No Data Available

Interacting Proteins for VAC14-AS1 Gene

Gene Ontology (GO) - Biological Process for VAC14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VAC14-AS1 Gene

Transcripts for VAC14-AS1 Gene

mRNA/cDNA for VAC14-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VAC14-AS1 Gene

No ASD Table

Relevant External Links for VAC14-AS1 Gene

GeneLoc Exon Structure for
VAC14-AS1
ECgene alternative splicing isoforms for
VAC14-AS1

Expression for VAC14-AS1 Gene

mRNA expression in normal human tissues for VAC14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VAC14-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.3), Brain - Caudate (basal ganglia) (x4.2), and Brain - Amygdala (x4.0).
genes like me logo Genes that share expression patterns with VAC14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VAC14-AS1 Gene

Orthologs for VAC14-AS1 Gene

Evolution for VAC14-AS1 Gene

ENSEMBL:
Gene Tree for VAC14-AS1 (if available)
TreeFam:
Gene Tree for VAC14-AS1 (if available)

No data available for Orthologs for VAC14-AS1 Gene

Paralogs for VAC14-AS1 Gene

No data available for Paralogs for VAC14-AS1 Gene

Variants for VAC14-AS1 Gene

Sequence variations from dbSNP and Humsavar for VAC14-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs762388639 Pathogenic 70,762,915(+) AGAGC(A/C)ACTTG intron-variant, reference, missense
rs10653790 -- 70,762,110(+) TTTTT(-/GTTTT)TGTTT intron-variant
rs10671938 -- 70,761,019(+) GTGTG(-/TGTGTGCG/TGTGTGTG/TGTGTGTGTGTG)CATGG intron-variant
rs10687907 -- 70,753,618(+) CTCCC(-/AACT)AGAGA intron-variant
rs111277980 -- 70,753,800(+) GAGCC(A/G)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VAC14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758653 CNV gain 17122850
esv3892881 CNV gain 25118596
nsv517391 CNV loss 19592680
nsv572945 CNV gain 21841781
nsv7285 OTHER inversion 18451855

Relevant External Links for VAC14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAC14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VAC14-AS1 Gene

Disorders for VAC14-AS1 Gene

Relevant External Links for VAC14-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VAC14-AS1

No disorders were found for VAC14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VAC14-AS1 Gene

Publications for VAC14-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for VAC14-AS1 Gene

Sources for VAC14-AS1 Gene

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