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Aliases for UXT-AS1 Gene

Subcategory (RNA class) for UXT-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for UXT-AS1 Gene

  • UXT Antisense RNA 1 2 3 5

External Ids for UXT-AS1 Gene

ORGUL Members for UXT-AS1 Gene

Previous GeneCards Identifiers for UXT-AS1 Gene

  • GC0XP047520

Summaries for UXT-AS1 Gene

GeneCards Summary for UXT-AS1 Gene

UXT-AS1 (UXT Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for UXT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UXT-AS1 Gene

Genomics for UXT-AS1 Gene

Regulatory Elements for UXT-AS1 Gene

Enhancers for UXT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH047216 1.4 ENCODE dbSUPER 11.2 -440.3 -440315 5 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF207 ZNF143 ZNF548 LOC100113397 ZNF81 INE1 LINC01560 ZNF182 ZNF674-AS1 UBA1 RBM10 USP11 ZNF674
GH0XH048020 1.5 FANTOM5 Ensembl ENCODE 10.3 +362.6 362593 2 TBP PKNOX1 FOXA2 ZNF76 KLF17 SIN3A RAD21 BRCA1 ZNF2 YY1 ENSG00000204620 INE1 FTSJ1 ZNF81 RBM3 ZNF630 ZNF182 NUS1P1 UBA1 PQBP1
GH0XH048538 1.1 ENCODE 10.3 +881.1 881076 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS TBC1D25 ENSG00000204620 RBM3 PORCN LOC101927635 FTSJ1 RN7SL262P ZNF630 ENSG00000228343 ZNF182
GH0XH047632 1.6 FANTOM5 Ensembl ENCODE 6.5 -24.9 -24907 3 HDGF PKNOX1 ZSCAN4 FEZF1 YBX1 ATF7 RUNX3 IKZF2 EGR2 CEBPB CFP ARAF UXT-AS1 ELK1
GH0XH047657 1.1 ENCODE 9 -0.1 -94 2 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 FOS INE1 ENSG00000204620 FTSJ1 UBA1 ZNF81 RBM3 NUS1P1 UXT-AS1 ELK1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UXT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000246440 67 1801 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SP3

Genomic Location for UXT-AS1 Gene

Chromosome:
X
Start:
47,658,833 bp from pter
End:
47,660,377 bp from pter
Size:
1,545 bases
Orientation:
Plus strand

Genomic View for UXT-AS1 Gene

Genes around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UXT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UXT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UXT-AS1 Gene

Proteins for UXT-AS1 Gene

Post-translational modifications for UXT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UXT-AS1 Gene

Domains & Families for UXT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UXT-AS1 Gene

Function for UXT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UXT-AS1 Gene

Localization for UXT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UXT-AS1 Gene

Pathways & Interactions for UXT-AS1 Gene

SuperPathways for UXT-AS1 Gene

No Data Available

Interacting Proteins for UXT-AS1 Gene

Gene Ontology (GO) - Biological Process for UXT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UXT-AS1 Gene

Drugs & Compounds for UXT-AS1 Gene

No Compound Related Data Available

Transcripts for UXT-AS1 Gene

mRNA/cDNA for UXT-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UXT-AS1 Gene

No ASD Table

Relevant External Links for UXT-AS1 Gene

GeneLoc Exon Structure for
UXT-AS1
ECgene alternative splicing isoforms for
UXT-AS1

Expression for UXT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UXT-AS1 Gene

genes like me logo Genes that share expression patterns with UXT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UXT-AS1 Gene

Orthologs for UXT-AS1 Gene

Evolution for UXT-AS1 Gene

ENSEMBL:
Gene Tree for UXT-AS1 (if available)
TreeFam:
Gene Tree for UXT-AS1 (if available)

No data available for Orthologs for UXT-AS1 Gene

Paralogs for UXT-AS1 Gene

No data available for Paralogs for UXT-AS1 Gene

Variants for UXT-AS1 Gene

Sequence variations from dbSNP and Humsavar for UXT-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000508259 -- 47,657,019(+) TGCTT(A/G)TTATG intron-variant, upstream-variant-2KB
rs1001545882 -- 47,658,915(+) CTTAG(A/G)GGGCG nc-transcript-variant, reference, missense
rs1001914470 -- 47,659,204(+) GGCCA(A/G)CCAAA intron-variant, upstream-variant-2KB
rs1002955508 -- 47,660,528(+) TTGAG(A/G)TTAGT downstream-variant-500B, upstream-variant-2KB
rs1004106888 -- 47,657,363(+) GCTCC(A/C)CACCC intron-variant, upstream-variant-2KB

Relevant External Links for UXT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UXT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UXT-AS1 Gene

Disorders for UXT-AS1 Gene

Relevant External Links for UXT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UXT-AS1

No disorders were found for UXT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UXT-AS1 Gene

Publications for UXT-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for UXT-AS1 Gene

Sources for UXT-AS1 Gene

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