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Aliases for UXT-AS1 Gene

Subcategory (RNA class) for UXT-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for UXT-AS1 Gene

  • UXT Antisense RNA 1 2 3 5

External Ids for UXT-AS1 Gene

ORGUL Members for UXT-AS1 Gene

Previous GeneCards Identifiers for UXT-AS1 Gene

  • GC0XP047520

Summaries for UXT-AS1 Gene

GeneCards Summary for UXT-AS1 Gene

UXT-AS1 (UXT Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UXT-AS1 Gene

Genomics for UXT-AS1 Gene

Regulatory Elements for UXT-AS1 Gene

Enhancers for UXT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF047216 0.4 ENCODE 11.2 -440.3 -440315 5.0 HDGF PKNOX1 WRNIP1 SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF207 ZNF143 LOC100113397 ZNF674-AS1 LINC01560 ZNF81 ZNF182 INE1 UXT-AS1 LOC100419232 SNORA11C ZNF674
GH0XF048020 1.4 FANTOM5 Ensembl ENCODE 10.3 +362.6 362593 2.1 TBP PKNOX1 WRNIP1 ZNF76 KLF17 RAD21 BRCA1 ZNF2 ZBTB40 YY1 ZNF182 ZNF630 LINC01560 UXT-AS1 SYN1 PIR35699 ZNF630-AS1
GH0XF048538 0.5 ENCODE 10.3 +881.1 881076 3.3 HDGF PKNOX1 ATF1 ARID4B SIN3A FEZF1 DMAP1 BRCA1 ZNF2 YY1 TBC1D25 ENSG00000204620 RBM3 RN7SL262P LOC101927635 PORCN FTSJ1 ZNF630 ENSG00000228343 ZNF182
GH0XF048464 1.1 Ensembl ENCODE 10.3 +806.9 806880 1.6 JUND ZNF585B FOS EBF1 RN7SL262P ZNF630 ZNF182 LINC01560 UXT-AS1 SLC38A5 LOC791096
GH0XF047657 0.5 ENCODE 9 -0.1 -94 2.9 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS KLF13 INE1 ENSG00000204620 ZNF81 NUS1P1 UXT-AS1 ELK1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UXT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001489837 68 2200 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 KLF13 SP3

Genomic Location for UXT-AS1 Gene

Chromosome:
X
Start:
47,658,833 bp from pter
End:
47,660,377 bp from pter
Size:
1,545 bases
Orientation:
Plus strand

Genomic View for UXT-AS1 Gene

Genes around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UXT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UXT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UXT-AS1 Gene

Proteins for UXT-AS1 Gene

Post-translational modifications for UXT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UXT-AS1 Gene

Domains & Families for UXT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UXT-AS1 Gene

Function for UXT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UXT-AS1 Gene

Localization for UXT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UXT-AS1 Gene

Pathways & Interactions for UXT-AS1 Gene

SuperPathways for UXT-AS1 Gene

No Data Available

Interacting Proteins for UXT-AS1 Gene

Gene Ontology (GO) - Biological Process for UXT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UXT-AS1 Gene

Transcripts for UXT-AS1 Gene

mRNA/cDNA for UXT-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UXT-AS1 Gene

No ASD Table

Relevant External Links for UXT-AS1 Gene

GeneLoc Exon Structure for
UXT-AS1
ECgene alternative splicing isoforms for
UXT-AS1

Expression for UXT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UXT-AS1 Gene

genes like me logo Genes that share expression patterns with UXT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UXT-AS1 Gene

Orthologs for UXT-AS1 Gene

Evolution for UXT-AS1 Gene

ENSEMBL:
Gene Tree for UXT-AS1 (if available)
TreeFam:
Gene Tree for UXT-AS1 (if available)

No data available for Orthologs for UXT-AS1 Gene

Paralogs for UXT-AS1 Gene

No data available for Paralogs for UXT-AS1 Gene

Variants for UXT-AS1 Gene

Sequence variations from dbSNP and Humsavar for UXT-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs111625597 -- 47,657,865(+) CTTTC(G/T)GATGG upstream-variant-2KB, splice-acceptor-variant
rs11550676 -- 47,658,931(-) GAGCC(A/C)ATCAT nc-transcript-variant, reference, synonymous-codon, utr-variant-5-prime
rs11798394 -- 47,657,068(+) CAGCT(C/T)TGAAG intron-variant, upstream-variant-2KB
rs138695480 -- 47,658,843(+) CCGCT(G/T)CAGCA nc-transcript-variant, reference, missense
rs139062431 -- 47,659,597(+) TCCTG(G/T)CAATG intron-variant, upstream-variant-2KB

Relevant External Links for UXT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UXT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UXT-AS1 Gene

Disorders for UXT-AS1 Gene

Relevant External Links for UXT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UXT-AS1

No disorders were found for UXT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UXT-AS1 Gene

Publications for UXT-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for UXT-AS1 Gene

Sources for UXT-AS1 Gene

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