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Aliases & Descriptions for USP6
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.1.2.15 3 HRP1 2 , 3 OTTHUMP00000125301 2 TRE17 1 , 2 TRE2 2 , 3 , 5 Tre-2 1 , 2 Tre2 1 USP6-short 2
Descriptions Deubiquitinating enzyme 6 3 Proto-oncogene TRE-2 3 Ubiquitin thioesterase 6 3 Ubiquitin-specific-processing protease 6 3 hyperpolymorphic gene 1 2 tre-2 oncogene 2 ubiquitin specific peptidase 6 (Tre-2 oncogene) 2 ubiquitin specific peptidase 6- 2 ubiquitin specific protease 6 2 ubiquitin specific protease 6 (Tre-2 oncogene) 1 , 2 ubiquitin-specific protease USP6 2
Search outside databases for aliases for USP6 genePrevious GC identifers: GC17P005451 GC17P005369 GC17P004976 GC17P005232
Summaries for USP6 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 Function : Has an ATP-independent isopeptidase activity, cleaving at the C-terminus of the ubiquitinmoiety. In vitro, isoform 2, but not isoform 3, shows deubiquitinating activity
Gene Wiki entry for USP6
Genomic Location for USP6
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the USP6 gene Entrez Gene cytogenetic band: 17p13 Ensembl cytogenetic band: 17p13.2 HGNC cytogenetic band: 17p13 USP6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P004972:
(about GC identifiers )
Start:
4,960,457 bp from pter
End:
5,019,053 bp from pter
Size:
58,597 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010718.15 Proteins for USP6
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 (See
protein sequence )Recommended Name: Ubiquitin carboxyl-terminal hydrolase 6 Size : 1406 amino acids; 158658 Da
Miscellaneous : The USP6 gene only exists in the primate lineage
Secondary accessions : Q15634 Q86WP6 Q8IWT4Alternative splicing : 3 isoforms : P35125-1 P35125-2 P35125-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004496.2 ENSEMBL proteins: ENSP00000380022 ENSP00000350074 ENSP00000328010 ENSP00000305473 ENSP00000250066 ENSP00000250067 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for USP6: Assays for USP6:
Protein
Domains/ Families for USP6(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P35125 ProtoNet protein and cluster: P35125
2 Blocks protein families : IPB000195 RabGAP/TBC domain IPB001394 Ubiquitin thiolesterase UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 Similarity : Belongs to the peptidase C19 familySimilarity : Contains 1 Rab-GAP TBC domain
Gene Function for USP6
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001039674 Applied Biosystems Silencer ® siRNAs for USP6 Sigma-Aldrich siRNA and siRNA Panels for USP6 Sigma-Aldrich shRNA Panels and shRNA for USP6 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004505                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004505                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001039674  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004505 UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 Function : Has an ATP-independent isopeptidase activity, cleaving at the C-terminus of the ubiquitinmoiety. In vitro, isoform 2, but not isoform 3, shows deubiquitinating activity Catalytic activity : Ubiquitin C-terminal thioester + H(2)O = ubiquitin + a thiolEnzyme Number (IUBMB): EC 3.1.2.15
Genatlas biochemistry entry for USP6 :ubiquitin specific protease 6,hyperpolymorphic gene 1,deubiquitin enzyme family 5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for USP6
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for USP6 (Your Favorite Gene powered by Ingenuity) 5/42 Interacting proteins for USP6 (ENSP00000305473 3 P35125 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 42
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006464 protein modification process
NAS 9827704 GO:0006511 ubiquitin-dependent protein catabolic process
IEA -- GO:0032313 regulation of Rab GTPase activity
IEA --
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Drugs & Compounds for USP6 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for USP6
Browse Tocris compounds for USP6
Transcripts for USP6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001039674 Sigma-Aldrich siRNA and siRNA Panels for USP6 Sigma-Aldrich shRNA Panels and shRNA for USP6 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004505
REFSEQ mRNAs for USP6 gene: NM_004505.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004505
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004505                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004505                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001039674  
Additional cDNA sequence: AB449915.1 AY143550.1 BX647719.1 X78261.1
9 DOTS entries : DT.100037996 DT.100824934 DT.101984339 DT.120915753 DT.304019 DT.102834044 DT.95289961 DT.120953569 DT.97776537
24/50 AceView cDNA sequences (see all 50
):AL042528 AL042432 BE044069 AL044255 AY143550 BC029495 AL041793 BV200185 AA328699 BV200183 BV200181 BV204922 BV202000 BV200177 X63547 BV185478 BV204923 AA813383 NM_004505 AL696358 BV200187 AA922552 BV200178 BX647719
highest scoring ESTs for USP6 :AA328699 AA813383 AA846445 AI147443 AI150125 AI208018 AI419876 AL041793 AL042432 AL042528
Unigene Cluster for USP6: Ubiquitin specific peptidase 6 (Tre-2 oncogene) Hs.448851 [show with all ESTs ] Unigene Representative Sequence: BX647719 GeneLoc Exon Structure 6 Ensembl transcripts including schematic representations : ENST00000396805
ENST00000357482
ENST00000332776
ENST00000304328
ENST00000250066
ENST00000250067
Expression for USP6
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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USP6 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for USP6 1 / 2 / 3
9 probe-sets matching USP6 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.448851 Expression variation in blood from EXPOLDB for USP6
UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 Tissue specificity : Testis specific. Expressed in various cancer cell lines
Orthologs for USP6
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for USP6 gene from 2 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
worm (Caenorhabditis elegans)
H34C03.23
IV(6757531-6761964)
ubiquitin carboxy-terminal hydrolase
51(a)
--
tropical clawed frog (Silurana tropicalis)
Str.118642
--
Transcribed sequences
85.12(n)
CF242629.1
About this table Species with no ortholog for USP6 ENSEMBL Gene Tree for USP6 Paralogs for USP6 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for USP6 gene ENSG00000189423 2 USP21 2 ENSG00000188933 2 USP32 2 USP19 2
SNPs/Variants for USP6 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for USP6 (up to first 250kb)
Disorders & Mutations for USP6
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604334 UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
Involved in tumorigenesis
Medical News for USP6 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for USP6 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/22 PubMed articles for USP6 gene (see all 22
): The Tre2 (USP6) oncogene is a hominoid-specific gene. (PubMed id 12604796) 1, 3, 4 Paulding C.A.... Haber D.A. (2003) Expression in a RabGAP yeast mutant of two human homologues, one of which is an oncogene. (PubMed id 14521938) 1, 3, 4 Bizimungu C.... Vandenbol M. (2003) Human and mouse proteases: a comparative genomic approach. (PubMed id 12838346) 2, 3 Puente X.S.... Lopez-Otin C. (2003) The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene. (PubMed id 8247125) 3, 4 Papa F.R. and Hochstrasser M. (1993) De-novo mutation in hereditary motor and sensory neuropathy type I. (PubMed id 1349106) 2, 3 Hoogendijk J.E....Baas F. (1992) A novel transcriptional unit of the tre oncogene widely expressed in human cancer cells. (PubMed id 1565468) 3, 4 Nakamura T.... Hill M. (1992) USP6 (Tre2) fusion oncogenes in aneurysmal bone cyst. (PubMed id 15026324) 1, 3 Oliveira A.M.... Fletcher J.A. (2004) Identification and characterization of a novel Tre-2/Bub2/Cdc16 (TBC) protein that possesses Rab3A-GAP activity. (PubMed id 19077034) 3 Ishibashi K.... Fukuda M. (2009) Frequency of USP6 rearrangements in myositis ossificans, brown tumor, and cherubism: molecular cytogenetic evidence that a subset of "myositis ossificans-like lesions" are the early phases in the formation of soft-tissue aneurysmal bone cyst. (PubMed id 18265974) 3 Sukov W.R....Oliveira A.M. (2008) Mutational analysis of the TRE2 oncogene encoding an inactive RabGAP. (PubMed id 17701273) 3 Bizimungu C....Vandenbol M. (2007)
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Genome Databases showing USP6
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing USP6
(According to HUGE )
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Specialized Databases showing USP6 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for USP6 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for USP6:
Recombinant Proteins (USP6 ) Antibodies (USP6 )
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