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USP6 Gene

protein-coding   GIFtS: 59

GC17P004972
ubiquitin specific peptidase 6 (Tre-2 oncogene)
(Previous name: ubiquitin specific protease 6 (Tre-2 oncogene) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: HRP1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
EC 3.1.2.15 3
HRP1 2, 3
OTTHUMP00000125301 2
TRE17 1, 2
TRE2 2, 3, 5
Tre-2 1, 2
Tre2 1
USP6-short 2
Descriptions
Deubiquitinating enzyme 6 3
Proto-oncogene TRE-2 3
Ubiquitin thioesterase 6 3
Ubiquitin-specific-processing protease 6 3
hyperpolymorphic gene 1 2
tre-2 oncogene 2
ubiquitin specific peptidase 6 (Tre-2 oncogene) 2
ubiquitin specific peptidase 6- 2
ubiquitin specific protease 6 2
ubiquitin specific protease 6 (Tre-2 oncogene) 1, 2
ubiquitin-specific protease USP6 2
External Ids
HGNC: 126291
Entrez Gene: 90982
UniProtKB: P351253
Ensembl: ENSG000001292047
Search outside databases for aliases for USP6 gene

Previous GC identifers: GC17P005451 GC17P005369 GC17P004976 GC17P005232

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
Function: Has an ATP-independent isopeptidase activity, cleaving at the C-terminus of the ubiquitin
moiety. In vitro, isoform 2, but not isoform 3, shows deubiquitinating activity

Gene Wiki entry for USP6

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the USP6 gene  

Entrez Gene cytogenetic band: 17p13   Ensembl cytogenetic band:  17p13.2   HGNC cytogenetic band: 17p13

USP6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P004972:     (about GC identifiers)

Start:
4,960,457 bp from pter
End:
5,019,053 bp from pter
Size:
58,597 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000017.9  NT_010718.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125 (See protein sequence)
Recommended Name: Ubiquitin carboxyl-terminal hydrolase 6  
Size: 1406 amino acids; 158658 Da
Miscellaneous: The USP6 gene only exists in the primate lineage
Secondary accessions: Q15634 Q86WP6 Q8IWT4
Alternative splicing: 3 isoforms:  P35125-1   P35125-2   P35125-3   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_004496.2  

    ENSEMBL proteins: 
    ENSP00000380022 ENSP00000350074 ENSP00000328010 ENSP00000305473 ENSP00000250066 ENSP00000250067 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (USP6)
    Human Recombinant Proteins from Abnova (USP6)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005764 lysosome TAS9827704
    About this table

    Antibodies for USP6: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for USP6
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (USP6), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (USP6)
    Novus Biologicals Antibodies for USP6

    Assays for USP6: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR001394 Peptidase_C19
     IPR000195 RabGAP_TBC
     IPR018200 Pept_C19ubi-hydrolase_C_CS


       GeneDecks  USP6 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P35125

    ProtoNet protein and cluster: P35125

    2 Blocks protein families:
    IPB000195 RabGAP/TBC domain
    IPB001394 Ubiquitin thiolesterase


    UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
    Similarity: Belongs to the peptidase C19 family
    Similarity: Contains 1 Rab-GAP TBC domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (USP6)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (USP6)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001039674

                  Applied Biosystems Silencer® siRNAs for USP6

                  Sigma-Aldrich siRNA and siRNA Panels for USP6  
                         Sigma-Aldrich shRNA Panels and shRNA for USP6  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004505
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004505
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_001039674 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_004505

    UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
    Function: Has an ATP-independent isopeptidase activity, cleaving at the C-terminus of the ubiquitin
    moiety. In vitro, isoform 2, but not isoform 3, shows deubiquitinating activity
    Catalytic activity: Ubiquitin C-terminal thioester + H(2)O = ubiquitin + a thiol
    Enzyme Number (IUBMB): EC 3.1.2.15 

    Genatlas biochemistry entry for USP6:
    ubiquitin specific protease 6,hyperpolymorphic gene 1,deubiquitin enzyme family

    5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676 nucleic acid binding TAS1565468
    GO:0004197 cysteine-type endopeptidase activity TAS9827704
    GO:0004221 ubiquitin thiolesterase activity IEA--
    GO:0005097 Rab GTPase activator activity IEA--
    GO:0005515 protein binding IPI16555005
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  USP6  (Your Favorite Gene powered by Ingenuity) 
     Protein Ubiquitination Pathway

       GeneDecks  USP6 for the pathways selected above  
    About GeneDecksing


    5/42 Interacting proteins for USP6 (ENSP000003054733 P351251, 2) via UniProtKB, MINT, and/or STRING (see all 42 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ANKRD44Q8N8A21EBI-954590, EBI-1245329
    MYL2P109161EBI-954590, EBI-725770
    FOSENSP000003062453STRING (score=.972)
    SRCENSP000003626593STRING (score=.962)
    AKT1ENSP000002702023STRING (score=.948)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006464 protein modification process NAS9827704
    GO:0006511 ubiquitin-dependent protein catabolic process IEA--
    GO:0032313 regulation of Rab GTPase activity IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Enzo Life Sciences drugs & compounds for USP6
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for USP6

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (USP6)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (USP6)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001039674

                  Sigma-Aldrich siRNA and siRNA Panels for USP6  
                         Sigma-Aldrich shRNA Panels and shRNA for USP6  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_004505  

    REFSEQ mRNAs for USP6 gene: 

    NM_004505.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_004505  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004505
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004505
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_001039674 

    Additional cDNA sequence: 

    AB449915.1 AY143550.1 BX647719.1 X78261.1 

    9 DOTS entries:

    DT.100037996  DT.100824934  DT.101984339  DT.120915753  DT.304019  DT.102834044  DT.95289961  DT.120953569 
    DT.97776537 

    24/50 AceView cDNA sequences (see all 50 ):

    AL042528 AL042432 BE044069 AL044255 AY143550 BC029495 AL041793 BV200185 
    AA328699 BV200183 BV200181 BV204922 BV202000 BV200177 X63547 BV185478 
    BV204923 AA813383 NM_004505 AL696358 BV200187 AA922552 BV200178 BX647719 

    highest scoring ESTs for USP6:

    AA328699 AA813383 AA846445 AI147443 AI150125 AI208018 AI419876 AL041793 AL042432 AL042528 

    Unigene Cluster for USP6:

    Ubiquitin specific peptidase 6 (Tre-2 oncogene)
    Hs.448851  [show with all ESTs]
    Unigene Representative Sequence: BX647719


    GeneLoc Exon Structure

    6 Ensembl transcripts including schematic representations:
    ENST00000396805  ENST00000357482  ENST00000332776  ENST00000304328  ENST00000250066  ENST00000250067  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    USP6 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for USP6

    1 / 2 / 3

    9 probe-sets matching USP6 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    1613_s_at2, 3 U95-A 3 1.00 0.49 0.16 0.39 X63546 0.60 0.75 0.68 1

    1614_s_at2, 3 U95-A 8 1.00 0.22 0.90 0.64 X63546 0.60 0.75 0.68 1

    31526_f_at2, 3 U95-A 5 1.00 0.21 0.93 1.25 X63547 0.60 0.73 0.67 1

    34677_f_at2, 3 U95-A 5 1.00 0.20 0.96 1.32 AJ012755 0.20 0.04 0.14 3

    45403_f_at2, 3 U95-B 5 0.88 0.19 0.97 1.41 AI962621 0.20 0.05 0.15 3

    206405_x_at2, 3 U133-A 5 1.00 0.66 -- -- NM_004505 0.60 1.00 0.82 1

    206405_x_at2 U133Plus2 5 1.00 0.66 -- -- -- -- -- -- --

    1555063_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --

    1555065_x_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.448851

    Expression variation in blood from EXPOLDB for USP6

    UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
    Tissue specificity: Testis specific. Expressed in various cancer cell lines

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for USP6 gene from 2 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    worm
    (Caenorhabditis elegans)
    H34C03.23 IV(6757531-6761964) ubiquitin carboxy-terminal hydrolase 51(a)   --
    tropical clawed frog
    (Silurana tropicalis)
    Str.118642   -- Transcribed sequences 85.12(n)  CF242629.1 
    About this table        Species with no ortholog for USP6

    ENSEMBL Gene Tree for USP6
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for USP6 gene
    ENSG000001894232  USP212  ENSG000001889332  USP322  USP192  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/228 NCBI SNPs in USP6 are shown (see all 228 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 16)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 17 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs20714561,2
    A,C,F,H4972670(+) TGCACG/ACATGT 1 -- ut51 ese35Minor allele frequency- A:0.42EA EU WA 1898
    --
    rs11223131,2
    A,C,F,H4973269(-) AGGGAG/AGTCTC 1 -- ut51 ese36Minor allele frequency- A:0.39EU EA WA MN 2100
    --
    rs98991771,2
    A,C,F,H4999532(+) TACCCG/AGAAGA 1 Q/R mis1 ese3 trp38Minor allele frequency- A:0.24EU EA WA 832
    --
    rs38874461,2
    A,C,F,H4971928(-) aaatcG/Agatgg 1 -- ng518Minor allele frequency- A:0.10MN EU EA WA NA 726
    --
    rs20714571,2
    A,C,F,H4972750(+) GACCCA/GGGCAA 1 -- ut51 ese35Minor allele frequency- G:0.47EA EU WA 1530
    rs38902871,2
    A,C,F,H4972892(-) GAAAAC/TCTTTG 1 -- ut51 ese39Minor allele frequency- T:0.20NS EU EA WA 522
    rs80737871,2
    A,C,F,H4983618(+) TTGAAC/TGGAGC 1 W/R mis1 ese38Minor allele frequency- T:0.21EU EA WA 834
    rs23093671,2
    A,C,F,H5019318(-) cgtgcC/Tgctgc 1 -- ng315Minor allele frequency- T:0.36EU WA NA 382
    --
    rs38902861,2
    A,C,F4973134(-) ACATTT/CGGGAA 1 -- ut51 ese35Minor allele frequency- C:0.44NS 94
    --
    rs38536471,2
    A,C,F4972160(+) CTCCCC/ATTGGA 1 -- ng51 tfbs3 trp31Minor allele frequency- A:0.07MN 184
    About this table

    HapMap Linkage Disequilibrium images for USP6 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 604334

    UniProtKB/Swiss-Prot: UBP6_HUMAN, P35125
  • Involved in tumorigenesis
  • (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/22 PubMed articles for USP6 gene (see all 22 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 9098 HGNC: 12629 AceView: USP6 Ensembl:ENSG00000129204 euGenes: HUgn9098
    ECgene: USP6 H-InvDB: USP6
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for USP6 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for USP6:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
      Invitrogen Clones  Invitrogen Q-PCR Products
      Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for USP6-related products

     Millipore Custom Antibody & Bulk Services
     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for USP6 Antibodies for USP6
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for USP6 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Drugs for USP6
     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for USP6

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