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Aliases for USP46-AS1 Gene

Subcategory (RNA class) for USP46-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for USP46-AS1 Gene

  • USP46 Antisense RNA 1 2 3 5
  • USP46 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2314I6.1 3

External Ids for USP46-AS1 Gene

Previous GeneCards Identifiers for USP46-AS1 Gene

  • GC04P053522

Summaries for USP46-AS1 Gene

GeneCards Summary for USP46-AS1 Gene

USP46-AS1 (USP46 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP46-AS1 Gene

Genomics for USP46-AS1 Gene

Regulatory Elements for USP46-AS1 Gene

Enhancers for USP46-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F051841 1.1 ENCODE 12.2 -815.7 -815687 3.8 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS USP46-AS1 DCUN1D4 PIR46111 DUTP7
GH04F052588 1.1 Ensembl ENCODE 10.9 -70.4 -70351 2.1 SOX13 CTCF ESRRA ETV1 JUN RAD21 RARA GATA2 POLR2A RERE USP46 USP46-AS1 ENSG00000212490 ERVMER34-1 RNU6-1252P
GH04F052995 1 Ensembl ENCODE 9.9 +337.6 337561 3.6 PKNOX1 SIN3A FEZF1 RAD21 NR2F2 ZKSCAN1 ZNF335 JUND SMARCA4 PBX2 USP46 USP46-AS1 LNX1 LOC100506444 FIP1L1 LOC101928658 PIR32665
GH04F052572 0.7 Ensembl ENCODE 11.2 -86.1 -86061 1.3 JUND FOS MAFK USP46 USP46-AS1 LOC101928658 ERVMER34-1 ENSG00000212490 RNU6-1252P
GH04F053489 1 Ensembl ENCODE 5.1 +831.5 831475 1.8 CTCF MAFG CEBPB TRIM22 ZNF384 TBX21 RAD21 POLR2H ZNF316 ATF3 SCFD2 USP46-AS1 LNX1-AS1 GC04M053405
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP46-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001431218 -6 2401 DMAP1 EGR1 SCRT2 ZNF680 TFDP1 KLF16 GLIS1 KDM1A ZBTB33 MYC

Genomic Location for USP46-AS1 Gene

52,659,406 bp from pter
52,661,668 bp from pter
2,263 bases
Plus strand

Genomic View for USP46-AS1 Gene

Genes around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP46-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP46-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP46-AS1 Gene

Proteins for USP46-AS1 Gene

Post-translational modifications for USP46-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP46-AS1 Gene

Domains & Families for USP46-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP46-AS1 Gene

Function for USP46-AS1 Gene

Phenotypes for USP46-AS1 Gene

GenomeRNAi human phenotypes for USP46-AS1:
genes like me logo Genes that share phenotypes with USP46-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP46-AS1 Gene

Localization for USP46-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP46-AS1 Gene

Pathways & Interactions for USP46-AS1 Gene

SuperPathways for USP46-AS1 Gene

No Data Available

Interacting Proteins for USP46-AS1 Gene

Gene Ontology (GO) - Biological Process for USP46-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for USP46-AS1 Gene

Transcripts for USP46-AS1 Gene

mRNA/cDNA for USP46-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for USP46-AS1 Gene

USP46 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP46-AS1 Gene

No ASD Table

Relevant External Links for USP46-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for USP46-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP46-AS1 Gene

SOURCE GeneReport for Unigene cluster for USP46-AS1 Gene:

genes like me logo Genes that share expression patterns with USP46-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for USP46-AS1 Gene

Orthologs for USP46-AS1 Gene

Evolution for USP46-AS1 Gene

Gene Tree for USP46-AS1 (if available)
Gene Tree for USP46-AS1 (if available)

No data available for Orthologs for USP46-AS1 Gene

Paralogs for USP46-AS1 Gene

No data available for Paralogs for USP46-AS1 Gene

Variants for USP46-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP46-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10014556 -- 52,657,558(+) GACAT(A/G)AAAGA intron-variant, upstream-variant-2KB
rs113865914 -- 52,661,713(+) CTACA(C/T)GGCTG downstream-variant-500B
rs113936420 -- 52,659,918(+) GTCAG(A/G)GAGCC intron-variant, upstream-variant-2KB
rs115002045 -- 52,660,935(+) CAGAT(A/G)ACTTA nc-transcript-variant, upstream-variant-2KB
rs115119057 -- 52,658,284(+) TTCCT(A/G)CAGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for USP46-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1074712 CNV deletion 25765185
nsv524494 CNV loss 19592680
nsv594201 CNV loss 21841781

Relevant External Links for USP46-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP46-AS1 Gene

Disorders for USP46-AS1 Gene

Relevant External Links for USP46-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for USP46-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP46-AS1 Gene

Publications for USP46-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for USP46-AS1 Gene

Sources for USP46-AS1 Gene

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