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Aliases for USP46-AS1 Gene

Subcategory (RNA class) for USP46-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for USP46-AS1 Gene

  • USP46 Antisense RNA 1 2 3 5
  • USP46 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2314I6.1 3

External Ids for USP46-AS1 Gene

Previous GeneCards Identifiers for USP46-AS1 Gene

  • GC04P053522

Summaries for USP46-AS1 Gene

GeneCards Summary for USP46-AS1 Gene

USP46-AS1 (USP46 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP46-AS1 Gene

Genomics for USP46-AS1 Gene

Regulatory Elements for USP46-AS1 Gene

Enhancers for USP46-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP46-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for USP46-AS1 Gene

52,659,406 bp from pter
52,661,668 bp from pter
2,263 bases
Plus strand

Genomic View for USP46-AS1 Gene

Genes around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP46-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP46-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP46-AS1 Gene

Proteins for USP46-AS1 Gene

Post-translational modifications for USP46-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP46-AS1 Gene

Domains & Families for USP46-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP46-AS1 Gene

Function for USP46-AS1 Gene

Phenotypes for USP46-AS1 Gene

GenomeRNAi human phenotypes for USP46-AS1:
genes like me logo Genes that share phenotypes with USP46-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP46-AS1 Gene

Localization for USP46-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP46-AS1 Gene

Pathways & Interactions for USP46-AS1 Gene

SuperPathways for USP46-AS1 Gene

No Data Available

Interacting Proteins for USP46-AS1 Gene

Gene Ontology (GO) - Biological Process for USP46-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for USP46-AS1 Gene

Drugs & Compounds for USP46-AS1 Gene

No Compound Related Data Available

Transcripts for USP46-AS1 Gene

mRNA/cDNA for USP46-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for USP46-AS1 Gene

USP46 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP46-AS1 Gene

No ASD Table

Relevant External Links for USP46-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for USP46-AS1 Gene

mRNA expression in normal human tissues for USP46-AS1 Gene

SOURCE GeneReport for Unigene cluster for USP46-AS1 Gene:

genes like me logo Genes that share expression patterns with USP46-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for USP46-AS1 Gene

Orthologs for USP46-AS1 Gene

Evolution for USP46-AS1 Gene

Gene Tree for USP46-AS1 (if available)
Gene Tree for USP46-AS1 (if available)

No data available for Orthologs for USP46-AS1 Gene

Paralogs for USP46-AS1 Gene

No data available for Paralogs for USP46-AS1 Gene

Variants for USP46-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP46-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs113865914 -- 52,661,713(+) CTACA(C/T)GGCTG downstream-variant-500B
rs143003151 -- 52,661,511(+) CTAAA(A/T)TGGAA downstream-variant-500B
rs149830250 -- 52,661,909(+) GTGGC(-/A)CCTCC downstream-variant-500B
rs183382353 -- 52,661,919(+) CCCCC(C/T)CCCCC downstream-variant-500B
rs182095174 -- 52,661,405(+) GGCAG(C/T)GAATT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for USP46-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1074712 CNV deletion 25765185
nsv524494 CNV loss 19592680
nsv594201 CNV loss 21841781

Relevant External Links for USP46-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP46-AS1 Gene

Disorders for USP46-AS1 Gene

Relevant External Links for USP46-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for USP46-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP46-AS1 Gene

Publications for USP46-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 65

Products for USP46-AS1 Gene

Sources for USP46-AS1 Gene

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