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Aliases for USP46-AS1 Gene

Subcategory (RNA class) for USP46-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP46-AS1 Gene

  • USP46 Antisense RNA 1 2 3 5
  • USP46 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2314I6.1 3

External Ids for USP46-AS1 Gene

Previous GeneCards Identifiers for USP46-AS1 Gene

  • GC04P053522

Summaries for USP46-AS1 Gene

GeneCards Summary for USP46-AS1 Gene

USP46-AS1 (USP46 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP46-AS1 Gene

Genomics for USP46-AS1 Gene

Regulatory Elements for USP46-AS1 Gene

Enhancers for USP46-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G052588 1.1 Ensembl ENCODE 10.9 -70.3 -70308 2.0 SOX13 CTCF FOXA2 ESRRA JUN ETV1 MAX RAD21 RARA RERE USP46 USP46-AS1 ENSG00000212490 ERVMER34-1 RNU6-1252P
GH04G052995 1.2 Ensembl ENCODE dbSUPER 9.9 +337.6 337561 3.6 PKNOX1 SIN3A FEZF1 RAD21 ZKSCAN1 NR2F2 ZNF335 JUND SMARCA4 PBX2 USP46 USP46-AS1 LNX1 LOC100506444 FIP1L1 LOC101928658 PIR32665
GH04G052572 0.5 ENCODE 11.2 -86.1 -86061 1.3 JUND FOS MAFK USP46-AS1 USP46 LOC101928658 ENSG00000212490 ERVMER34-1 RNU6-1252P
GH04G053489 1 Ensembl ENCODE 5.1 +831.5 831475 1.8 CTCF FOXA2 CEBPG ZNF384 CHD7 RAD21 ZNF316 NFYB SMC3 NFE2 SCFD2 USP46-AS1 LNX1-AS1 GC04M053405
GH04G052991 0.2 dbSUPER 9.9 +332.2 332177 0.2 USP46 USP46-AS1 LOC101928658 PIR32665
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP46-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000168267 194 2001 YY1 EGR1 ZNF680 SMAD5 TFDP1 NFIC KLF16 KDM1A HNF4A ZBTB26

Genomic Location for USP46-AS1 Gene

Chromosome:
4
Start:
52,659,406 bp from pter
End:
52,661,668 bp from pter
Size:
2,263 bases
Orientation:
Plus strand

Genomic View for USP46-AS1 Gene

Genes around USP46-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP46-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP46-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP46-AS1 Gene

Proteins for USP46-AS1 Gene

Post-translational modifications for USP46-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP46-AS1 Gene

Domains & Families for USP46-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP46-AS1 Gene

Function for USP46-AS1 Gene

Phenotypes for USP46-AS1 Gene

GenomeRNAi human phenotypes for USP46-AS1:
genes like me logo Genes that share phenotypes with USP46-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP46-AS1 Gene

Localization for USP46-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP46-AS1 Gene

Pathways & Interactions for USP46-AS1 Gene

SuperPathways for USP46-AS1 Gene

No Data Available

Interacting Proteins for USP46-AS1 Gene

Gene Ontology (GO) - Biological Process for USP46-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP46-AS1 Gene

Drugs & Compounds for USP46-AS1 Gene

No Compound Related Data Available

Transcripts for USP46-AS1 Gene

mRNA/cDNA for USP46-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for USP46-AS1 Gene

USP46 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP46-AS1 Gene

No ASD Table

Relevant External Links for USP46-AS1 Gene

GeneLoc Exon Structure for
USP46-AS1
ECgene alternative splicing isoforms for
USP46-AS1

Expression for USP46-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP46-AS1 Gene

SOURCE GeneReport for Unigene cluster for USP46-AS1 Gene:

Hs.631514
genes like me logo Genes that share expression patterns with USP46-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP46-AS1 Gene

Orthologs for USP46-AS1 Gene

Evolution for USP46-AS1 Gene

ENSEMBL:
Gene Tree for USP46-AS1 (if available)
TreeFam:
Gene Tree for USP46-AS1 (if available)

No data available for Orthologs for USP46-AS1 Gene

Paralogs for USP46-AS1 Gene

No data available for Paralogs for USP46-AS1 Gene

Variants for USP46-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP46-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000026707 -- 52,661,700(+) TTAGA(A/G)GGTGG downstream-variant-500B
rs1000364526 -- 52,661,984(+) TTTGC(C/T)TTCAG downstream-variant-500B
rs1001360233 -- 52,660,661(+) TTTCT(-/TC)TCTCT intron-variant, upstream-variant-2KB
rs10014556 -- 52,657,558(+) GACAT(A/G)AAAGA intron-variant, upstream-variant-2KB
rs1002150084 -- 52,660,159(+) CTCTA(G/T)TTGTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for USP46-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1074712 CNV deletion 25765185
nsv524494 CNV loss 19592680
nsv594201 CNV loss 21841781

Relevant External Links for USP46-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP46-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP46-AS1 Gene

Disorders for USP46-AS1 Gene

Relevant External Links for USP46-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP46-AS1

No disorders were found for USP46-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP46-AS1 Gene

Publications for USP46-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for USP46-AS1 Gene

Sources for USP46-AS1 Gene

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