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Aliases for USP38 Gene

Aliases for USP38 Gene

  • Ubiquitin Specific Peptidase 38 2 3
  • Ubiquitin-Specific-Processing Protease 38 3 4
  • Ubiquitin Specific Protease 38 2 3
  • Deubiquitinating Enzyme 38 3 4
  • Ubiquitin Thioesterase 38 3 4
  • HP43.8KD 3 4
  • Ubiquitin Carboxyl-Terminal Hydrolase 38 3
  • Ubiquitin Thiolesterase 38 3
  • EC 3.4.19.12 4
  • KIAA1891 4

External Ids for USP38 Gene

Summaries for USP38 Gene

GeneCards Summary for USP38 Gene

USP38 (Ubiquitin Specific Peptidase 38) is a Protein Coding gene. Among its related pathways are Integrated Breast Cancer Pathway and Ubiquitin-Proteasome Dependent Proteolysis. GO annotations related to this gene include ubiquitin thiolesterase activity and cysteine-type peptidase activity. An important paralog of this gene is USP12.

UniProtKB/Swiss-Prot for USP38 Gene

  • Deubiquitinating enzyme exhibiting a preference towards Lys-63-linked Ubiquitin chains.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP38 Gene

Genomics for USP38 Gene

Genomic Location for USP38 Gene

Start:
143,184,917 bp from pter
End:
143,223,830 bp from pter
Size:
38,914 bases
Orientation:
Plus strand

Genomic View for USP38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for USP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP38 Gene

Regulatory Elements for USP38 Gene

Proteins for USP38 Gene

  • Protein details for USP38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NB14-UBP38_HUMAN
    Recommended name:
    Ubiquitin carboxyl-terminal hydrolase 38
    Protein Accession:
    Q8NB14
    Secondary Accessions:
    • B3KX93
    • Q3ZCV1
    • Q8NDF5
    • Q96DK6
    • Q96PZ6
    • Q9BY55

    Protein attributes for USP38 Gene

    Size:
    1042 amino acids
    Molecular mass:
    116546 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK26248.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB71627.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC03730.1; Type=Miscellaneous discrepancy; Note=The absence of the residues from Tyr-840 to Ser-871 is not the result of an alternative splicing.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for USP38 Gene

    Alternative splice isoforms for USP38 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for USP38 Gene

Proteomics data for USP38 Gene at MOPED

Post-translational modifications for USP38 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys773

Other Protein References for USP38 Gene

No data available for DME Specific Peptides for USP38 Gene

Domains for USP38 Gene

Gene Families for USP38 Gene

HGNC:
  • USP :Ubiquitin-specific peptidases

Protein Domains for USP38 Gene

UniProtKB/Swiss-Prot:

UBP38_HUMAN
Domain:
  • Contains 1 USP domain.:
    • Q8NB14
Family:
  • Belongs to the peptidase C19 family.:
    • Q8NB14
genes like me logo Genes that share domains with USP38: view

Function for USP38 Gene

Molecular function for USP38 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
UniProtKB/Swiss-Prot Function: Deubiquitinating enzyme exhibiting a preference towards Lys-63-linked Ubiquitin chains.

Enzyme Numbers (IUBMB) for USP38 Gene

Gene Ontology (GO) - Molecular Function for USP38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004197 cysteine-type endopeptidase activity IBA --
GO:0004843 ubiquitin-specific protease activity IDA 14715245
GO:0036459 ubiquitinyl hydrolase activity --
genes like me logo Genes that share ontologies with USP38: view
genes like me logo Genes that share phenotypes with USP38: view

miRNA for USP38 Gene

miRTarBase miRNAs that target USP38

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for USP38 Gene

Localization for USP38 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for USP38 Gene COMPARTMENTS Subcellular localization image for USP38 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1

No data available for Gene Ontology (GO) - Cellular Components for USP38 Gene

Pathways for USP38 Gene

genes like me logo Genes that share pathways with USP38: view

Pathways by source for USP38 Gene

1 Qiagen pathway for USP38 Gene
1 BioSystems pathway for USP38 Gene

Gene Ontology (GO) - Biological Process for USP38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process --
GO:0016579 protein deubiquitination IDA 14715245
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA --
GO:0061136 regulation of proteasomal protein catabolic process IBA --
genes like me logo Genes that share ontologies with USP38: view

Compounds for USP38 Gene

(1) HMDB Compounds for USP38 Gene

Compound Synonyms Cas Number PubMed IDs
Water
  • Dihydrogen oxide
7732-18-5
genes like me logo Genes that share compounds with USP38: view

Transcripts for USP38 Gene

Unigene Clusters for USP38 Gene

Ubiquitin specific peptidase 38:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP38 Gene

No ASD Table

Relevant External Links for USP38 Gene

GeneLoc Exon Structure for
USP38
ECgene alternative splicing isoforms for
USP38

Expression for USP38 Gene

mRNA expression in normal human tissues for USP38 Gene

mRNA differential expression in normal tissues according to GTEx for USP38 Gene

This gene is overexpressed in Muscle - Skeletal (6.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for USP38 Gene

SOURCE GeneReport for Unigene cluster for USP38 Gene Hs.480848

mRNA Expression by UniProt/SwissProt for USP38 Gene

Q8NB14-UBP38_HUMAN
Tissue specificity: Highly expressed in skeletal muscle. Expressed in adrenal gland.
genes like me logo Genes that share expressions with USP38: view

Orthologs for USP38 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for USP38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia USP38 36
  • 99.46 (n)
  • 99.62 (a)
USP38 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia USP38 36
  • 91.09 (n)
  • 92.88 (a)
USP38 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia USP38 36
  • 90.1 (n)
  • 90.26 (a)
USP38 37
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Usp38 36
  • 87.46 (n)
  • 90.12 (a)
Usp38 16
Usp38 37
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia USP38 37
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia USP38 37
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Usp38 36
  • 87.16 (n)
  • 89.63 (a)
chicken
(Gallus gallus)
Aves USP38 36
  • 73.82 (n)
  • 75.24 (a)
USP38 37
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia USP38 37
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.10104 36
usp38 36
  • 70.6 (n)
  • 75.61 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.15383 36
usp38 36
  • 63.82 (n)
  • 67.61 (a)
USP38 37
  • 64 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG8830 37
  • 29 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes UBP13 37
  • 18 (a)
ManyToMany
UBP9 37
  • 17 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 41 (a)
OneToMany
Species with no ortholog for USP38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for USP38 Gene

ENSEMBL:
Gene Tree for USP38 (if available)
TreeFam:
Gene Tree for USP38 (if available)

Paralogs for USP38 Gene

Paralogs for USP38 Gene

Selected SIMAP similar genes for USP38 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with USP38: view

Variants for USP38 Gene

Sequence variations from dbSNP and Humsavar for USP38 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs10598 -- 143,220,798(-) AAATA(A/T)ATTAC utr-variant-3-prime
rs4131029 -- 143,222,425(-) TTAAA(A/G)TATAT utr-variant-3-prime
rs4234886 -- 143,203,339(+) GTTCT(A/G)TTTGT intron-variant
rs4234887 -- 143,213,124(+) GACCA(C/T)TTAAT intron-variant
rs4285045 -- 143,214,565(+) GCCAG(A/G)AATAT synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for USP38 Gene

Variant ID Type Subtype PubMed ID
esv270292 CNV Insertion 20981092

Relevant External Links for USP38 Gene

HapMap Linkage Disequilibrium report
USP38

Disorders for USP38 Gene

Relevant External Links for USP38

Genetic Association Database (GAD)
USP38
genes like me logo Genes that share disorders with USP38: view

No data available for UniProtKB/Swiss-Prot for USP38 Gene

Publications for USP38 Gene

  1. Human and mouse proteases: a comparative genomic approach. (PMID: 12838346) Puente X.S. … Lopez-Otin C. (Nat. Rev. Genet. 2003) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. (PMID: 14715245) Quesada V. … Lopez-Otin C. (Biochem. Biophys. Res. Commun. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4

Products for USP38 Gene

Sources for USP38 Gene

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