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Aliases for USP35 Gene

Aliases for USP35 Gene

  • Ubiquitin Specific Peptidase 35 2 3
  • Ubiquitin-Specific-Processing Protease 35 4
  • Ubiquitin Specific Protease 35 2
  • Deubiquitinating Enzyme 35 4
  • Ubiquitin Thioesterase 35 4
  • EC 3.4.19.12 4
  • KIAA1372 4
  • USP34 4

External Ids for USP35 Gene

Summaries for USP35 Gene

GeneCards Summary for USP35 Gene

USP35 (Ubiquitin Specific Peptidase 35) is a Protein Coding gene. Among its related pathways are Ubiquitin-Proteasome Dependent Proteolysis. GO annotations related to this gene include ubiquitin thiolesterase activity and cysteine-type peptidase activity. An important paralog of this gene is USP12.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP35 Gene

Genomics for USP35 Gene

Genomic Location for USP35 Gene

Start:
78,188,812 bp from pter
End:
78,217,644 bp from pter
Size:
28,833 bases
Orientation:
Plus strand

Genomic View for USP35 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for USP35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP35 Gene

Regulatory Elements for USP35 Gene

Proteins for USP35 Gene

  • Protein details for USP35 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P2H5-UBP35_HUMAN
    Recommended name:
    Ubiquitin carboxyl-terminal hydrolase 35
    Protein Accession:
    Q9P2H5
    Secondary Accessions:

    Protein attributes for USP35 Gene

    Size:
    1018 amino acids
    Molecular mass:
    113405 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92610.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for USP35 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for USP35 Gene

Proteomics data for USP35 Gene at MOPED

Post-translational modifications for USP35 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for USP35 Gene

No data available for DME Specific Peptides for USP35 Gene

Domains for USP35 Gene

Gene Families for USP35 Gene

HGNC:
  • USP :Ubiquitin-specific peptidases

Protein Domains for USP35 Gene

UniProtKB/Swiss-Prot:

UBP35_HUMAN
Domain:
  • Contains 1 USP domain.:
    • Q9P2H5
Family:
  • Belongs to the peptidase C19 family.:
    • Q9P2H5
genes like me logo Genes that share domains with USP35: view

Function for USP35 Gene

Molecular function for USP35 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

Enzyme Numbers (IUBMB) for USP35 Gene

Gene Ontology (GO) - Molecular Function for USP35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004197 cysteine-type endopeptidase activity IBA --
GO:0004843 ubiquitin-specific protease activity IDA 14715245
GO:0005488 binding --
GO:0008234 cysteine-type peptidase activity --
GO:0036459 ubiquitinyl hydrolase activity --
genes like me logo Genes that share ontologies with USP35: view

miRNA for USP35 Gene

miRTarBase miRNAs that target USP35

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for USP35 Gene

Localization for USP35 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for USP35 Gene COMPARTMENTS Subcellular localization image for USP35 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for USP35 Gene

Pathways for USP35 Gene

genes like me logo Genes that share pathways with USP35: view

Pathways by source for USP35 Gene

1 Qiagen pathway for USP35 Gene

Interacting Proteins for USP35 Gene

Gene Ontology (GO) - Biological Process for USP35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process --
GO:0016579 protein deubiquitination IDA 14715245
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA --
GO:0061136 regulation of proteasomal protein catabolic process IBA --
genes like me logo Genes that share ontologies with USP35: view

Compounds for USP35 Gene

(1) HMDB Compounds for USP35 Gene

Compound Synonyms Cas Number PubMed IDs
Water
  • Dihydrogen oxide
7732-18-5
genes like me logo Genes that share compounds with USP35: view

Transcripts for USP35 Gene

Unigene Clusters for USP35 Gene

Ubiquitin specific peptidase 35:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP35 Gene

No ASD Table

Relevant External Links for USP35 Gene

GeneLoc Exon Structure for
USP35
ECgene alternative splicing isoforms for
USP35

Expression for USP35 Gene

mRNA expression in normal human tissues for USP35 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for USP35 Gene

SOURCE GeneReport for Unigene cluster for USP35 Gene Hs.531249

mRNA Expression by UniProt/SwissProt for USP35 Gene

Q9P2H5-UBP35_HUMAN
Tissue specificity: Expressed in testis, pancreas and skeletal muscle.
genes like me logo Genes that share expressions with USP35: view

Orthologs for USP35 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for USP35 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia USP35 36
  • 99.09 (n)
  • 98.57 (a)
cow
(Bos Taurus)
Mammalia USP35 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia USP35 36
  • 88.35 (n)
  • 90.96 (a)
USP35 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Usp35 36
  • 85.93 (n)
  • 88.5 (a)
Usp35 16
Usp35 37
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia USP35 37
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 34 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Usp35 36
  • 85.73 (n)
  • 88.78 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 64 (a)
OneToMany
-- 37
  • 54 (a)
OneToMany
USP35 36
  • 67.41 (n)
  • 67.72 (a)
lizard
(Anolis carolinensis)
Reptilia USP35 37
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia usp35 36
  • 63.47 (n)
  • 62.48 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010080 36
  • 48.87 (n)
  • 40.82 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG8830 36
  • 48.52 (n)
  • 36.84 (a)
CG8830 37
  • 28 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes UBP13 37
  • 17 (a)
ManyToMany
UBP9 37
  • 17 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 35 (a)
OneToMany
Species with no ortholog for USP35:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for USP35 Gene

ENSEMBL:
Gene Tree for USP35 (if available)
TreeFam:
Gene Tree for USP35 (if available)

Paralogs for USP35 Gene

Paralogs for USP35 Gene

Selected SIMAP similar genes for USP35 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with USP35: view

Variants for USP35 Gene

Sequence variations from dbSNP and Humsavar for USP35 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs478283 -- 78,191,443(+) GGCTG(A/G/T)GAAAG intron-variant
rs478476 -- 78,191,501(+) TCACA(C/G)AGGTA intron-variant
rs484005 -- 78,210,652(-) CTCAG(A/C)CTCGG reference, missense, nc-transcript-variant
rs508199 -- 78,210,298(-) GCGCA(C/G)GTCGA reference, missense, nc-transcript-variant
rs508861 -- 78,210,280(+) GCGCA(C/G/T)CAGTG reference, missense, synonymous-codon, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for USP35 Gene

Variant ID Type Subtype PubMed ID
nsv520740 CNV Gain 19592680
nsv516503 CNV Loss 19592680
nsv527066 CNV Gain 19592680
esv33345 CNV Gain 17666407
nsv826000 CNV Loss 20364138

Relevant External Links for USP35 Gene

HapMap Linkage Disequilibrium report
USP35

Disorders for USP35 Gene

Relevant External Links for USP35

Genetic Association Database (GAD)
USP35
Human Genome Epidemiology (HuGE) Navigator
USP35
genes like me logo Genes that share disorders with USP35: view

No data available for UniProtKB/Swiss-Prot for USP35 Gene

Publications for USP35 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4
  2. Human and mouse proteases: a comparative genomic approach. (PMID: 12838346) Puente X.S. … Lopez-Otin C. (Nat. Rev. Genet. 2003) 2 3
  3. Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. (PMID: 14715245) Quesada V. … Lopez-Otin C. (Biochem. Biophys. Res. Commun. 2004) 3 4
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 49
  5. Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes. (PMID: 22118674) Altun M. … Kessler B.M. (Chem. Biol. 2011) 3

Products for USP35 Gene

Sources for USP35 Gene

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