USP31 Gene
protein-coding GIFtS: 50
GCID: GC16M022986
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|
ubiquitin specific peptidase 31(Previous name: ubiquitin specific protease 31 )
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Aliases
for USP31 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Ubiquitin Specific Peptidase 311 2 | | Ubiquitin Carboxyl-Terminal Hydrolase 312 | | Ubiquitin Specific Protease 311 2 | | Ubiquitin Specific Proteinase 312 | | KIAA12031 3 | | Ubiquitin Thiolesterase 312 | | Deubiquitinating Enzyme 312 3 | | EC 3.4.19.123 | | Ubiquitin Thioesterase 312 3 | | EC 3.1.2.158 | | Ubiquitin-Specific-Processing Protease 312 3 | | |
Export aliases for USP31 gene to outside databasesPrevious GC identifers: GC01M021151 GC01M021474 GC16M023045 GC16M021162 |
Summaries
for USP31 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: UBP31_HUMAN, Q70CQ4Function: May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processingof poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity)
|
Genomic Views
for USP31 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the USP31 gene promoter:
SREBP-1c Pax-2 Nkx2-5 AP-4 SREBP-1b Meis-1b SREBP-1a Meis-1a NF-kappaB1 Meis-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for USP31
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat USP31 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p12.2 Ensembl cytogenetic band: 16p12.2 HGNC cytogenetic band: 16p12.3USP31 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M022986: view genomic region
(about GC identifiers)
Start:
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23,072,727 bp from pter |
End:
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23,160,591 bp from pter |
Size:
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87,865 bases |
Orientation:
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minus strand |
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Proteins
for USP31 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: UBP31_HUMAN, Q70CQ4 (See
protein sequence)Recommended Name: Ubiquitin carboxyl-terminal hydrolase 31 Size: 1352 amino acids; 146651 Da
Sequence caution: Sequence=AK126752; Type=Frameshift; Positions=941;
Secondary accessions: Q6AW97 Q6ZTC0 Q6ZTN2 Q9ULL7Alternative splicing: 2 isoforms: Q70CQ4-1 Q70CQ4-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for USP31: NX_Q70CQ4
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q70CQ4
2 DME Specific Peptides for USP31 (Q70CQ4)
USP31 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_065769.3
ENSEMBL proteins: ENSP00000219689 ENSP00000461621
Human Recombinant Protein Products:
USP31 Antibody Products:
Assay Products for USP31: |
Protein
Domains /
Families
for USP31 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
USP31 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q70CQ4ProtoNet protein and cluster: Q70CQ4 1 Blocks protein family: IPB001394 Ubiquitin thiolesterase
UniProtKB/Swiss-Prot: UBP31_HUMAN, Q70CQ4Similarity: Belongs to the peptidase C19 family |
Function
for USP31 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: UBP31_HUMAN, Q70CQ4Function: May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processingof poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity)Catalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by theC-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)Enzyme Numbers (IUBMB): EC 3.1.2.152 EC 3.4.19.121
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for USP31 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for USP31
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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Synthesis Service for USP31 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat USP31 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP31 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004221 | ubiquitin thiolesterase activity |
IEA | -- | | GO:0008234 | cysteine-type peptidase activity |
IEA | -- |
USP31 for ontologies About GeneDecksing
2 GenomeRNAi human phenotypes for USP31:
|
Pathways & Interactions
for USP31 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Ubiquitin-Proteasome Dependent Proteolysis | |
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for USP31
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for USP31
STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)
3 Interacting proteins for USP31 (Q70CQ43 ENSP000002196894) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
IEA | -- |
USP31 for ontologies About GeneDecksing
|
Drugs & Compounds
for USP31 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for USP31
Search CenterWatch for drugs/clinical trials and news about USP31 / UBP31
|
Transcripts
for USP31 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for USP31 gene: NM_020718.3 Unigene Cluster for USP31: Ubiquitin specific peptidase 31 Hs.183817 [show with all ESTs]Unigene Representative Sequence: NM_0207184 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000219689(uc002dlk.3 uc010vca.2 uc010bxm.3 uc002dll.3)
ENST00000567975 ENST00000381162 ENST00000563525
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for USP31 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for USP31
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: USP31 (NM_020718) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for USP31 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat USP31 |
Additional cDNA sequence: AB033029.1 AJ586135.2 AK057491.1 AK092790.1 AK126752.1 U52050.1 5 DOTS entries: DT.101980244 DT.91901673 DT.92425946 DT.99928034 DT.95129569 24/159 AceView cDNA sequences (see all 159): AW440572 BQ012996 AI468650 AV725490 AI187852 BU683258 BX115399 BF512220 AA995097 AB033029 BM718012 AJ586135 AI783638 BX648357 AI342753 BQ948537 AV725025 NM_020718 BM968853 T27102 AI081360 BF939930 AI168312 AI693630
GeneLoc Exon Structure
|
Expression
for USP31 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| USP31 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGATGTGTCA
About this image
See USP31 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for USP31
SOURCE GeneReport for Unigene cluster: Hs.183817
UniProtKB/Swiss-Prot: UBP31_HUMAN, Q70CQ4Tissue specificity: Widely expressed
SABiosciences Custom PCR Arrays for USP31
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for USP31
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat USP31 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat USP31 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat USP31 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP31 |
Orthologs
for USP31 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for USP31 gene from 5/19 species (see all 19) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
USP311 |
ubiquitin specific peptidase 31 |
74.64(n)
78.19(a) |
|
416580 XM_003642146.1 XP_003642194.1 |
lizard
(Anolis carolinensis) |
Reptilia |
USP316 |
-- |
70(a) |
1 ↔ 1 |
GL343936.1(57919-97954) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.328512 |
Xenopus laevis transcribed sequence with weak similarity more |
76.79(n) |
|
BJ627030.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
usp311 |
ubiquitin specific peptidase 31 |
63.38(n)
63.22(a) |
|
564487 XM_687820.5 XP_692912.3 |
fruit fly
(Drosophila melanogaster) |
Insecta |
CG304216 |
-- |
23(a) |
1 → many |
2R(20631335-20644501) |
ENSEMBL Gene Tree for USP31 (if available)
TreeFam Gene Tree for USP31 (if available) |
Paralogs
for USP31 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for USP31 gene
- USP152 USP112 USP322 USP432 USP192 USP42 USP62
3 SIMAP similar genes for USP31 using alignment to 2 protein entries: UBP31_HUMAN (see all proteins):USP15 USP43 USP11
USP31 for paralogs About GeneDecksing
|
Genomic Variants
for USP31 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for USP31 (23072727 - 23160591 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for USP31
1 CNV: 72509 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing USP31 |
|
Disorders
/ Diseases
for USP31 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
USP31 for disorders About GeneDecksing
1  disease for USP31: About MalaCardsmalaria
Human Genome Epidemiology (HuGE) Navigator: USP31 (1 document)
Export disorders for USP31 gene to outside databases
|
Publications
for USP31 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for USP31 gene integrated from 9 sources:
(articles sorted by number of sources associating them with USP31) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. (PubMed id 14715245)1, 2 Quesada V.... Lopez-Otin C. (2004)
- Human and mouse proteases: a comparative genomic approach. (PubMed id 12838346)1, 3 Puente X.S.... Lopez-Otin C. (2003)
- Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10574462)1, 2 Nagase T.... Ohara O. (1999)
- Human ubiquitin specific protease 31 is a deubiquitinating enzyme implicated in activation of nuclear factor-kappaB. (PubMed id 16214042)1, 9 Tzimas C....Hatzivassiliou E.G. (2006)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- Transcriptome analysis of human gastric cancer. (PubMed id 16341674)1 Oh J.H....Kim N.S. (2005)
- Identification of the human ubiquitin specific protease 31 (USP31) gene: structure, sequence and expression analysis. (PubMed id 15354349)1 Lockhart P.J.... Farrer M.J. (2004)
|
External Searches for USP31 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing USP31 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing USP31 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing USP31 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for USP31 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for USP31 gene:
Search GeneIP for patents involving USP31
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for USP31 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for USP31 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for USP31 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for USP31 | | | OriGene Protein Over-expression Lysate for USP31 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for USP31 | | OriGene 3'-UTR Clone for USP31 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for USP31 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for USP31 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| |
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 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat USP31 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing USP31 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat USP31 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat USP31 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat USP31 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat USP31 |
| |
 |  |  |  | |
| | | | Search Tocris compounds for USP31 |
| |  |  |  |  | | | | |
 |
 |
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 | | | USP31 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP31 |
|  |  |  | | | | Search ThermoFisher Antibodies for USP31 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat USP31 |
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