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Aliases for USP30-AS1 Gene

Subcategory (RNA class) for USP30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP30-AS1 Gene

  • USP30 Antisense RNA 1 2 3 5
  • USP30 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for USP30-AS1 Gene

Previous GeneCards Identifiers for USP30-AS1 Gene

  • GC12M109490

Summaries for USP30-AS1 Gene

GeneCards Summary for USP30-AS1 Gene

USP30-AS1 (USP30 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for USP30-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP30-AS1 Gene

Genomics for USP30-AS1 Gene

Regulatory Elements for USP30-AS1 Gene

Enhancers for USP30-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H109051 1.2 ENCODE 0.7 +0.5 472 3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC ZC3H11A SART3 UBE3B KCTD10 ALKBH2 WSCD2 USP30 CORO1C RNU4-32P TCHP USP30-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP30-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP30-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057135 965 2001 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC ZC3H11A

Genomic Location for USP30-AS1 Gene

Chromosome:
12
Start:
109,052,041 bp from pter
End:
109,053,965 bp from pter
Size:
1,925 bases
Orientation:
Minus strand

Genomic View for USP30-AS1 Gene

Genes around USP30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP30-AS1 Gene

Proteins for USP30-AS1 Gene

Post-translational modifications for USP30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP30-AS1 Gene

Domains & Families for USP30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP30-AS1 Gene

Function for USP30-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP30-AS1 Gene

Localization for USP30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP30-AS1 Gene

Pathways & Interactions for USP30-AS1 Gene

SuperPathways for USP30-AS1 Gene

No Data Available

Interacting Proteins for USP30-AS1 Gene

Gene Ontology (GO) - Biological Process for USP30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP30-AS1 Gene

Drugs & Compounds for USP30-AS1 Gene

No Compound Related Data Available

Transcripts for USP30-AS1 Gene

mRNA/cDNA for USP30-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for USP30-AS1 Gene

USP30 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for USP30-AS1 Gene

No ASD Table

Relevant External Links for USP30-AS1 Gene

GeneLoc Exon Structure for
USP30-AS1
ECgene alternative splicing isoforms for
USP30-AS1

Expression for USP30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP30-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP30-AS1 Gene

This gene is overexpressed in Liver (x5.6).

SOURCE GeneReport for Unigene cluster for USP30-AS1 Gene:

Hs.660996
genes like me logo Genes that share expression patterns with USP30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP30-AS1 Gene

Orthologs for USP30-AS1 Gene

Evolution for USP30-AS1 Gene

ENSEMBL:
Gene Tree for USP30-AS1 (if available)
TreeFam:
Gene Tree for USP30-AS1 (if available)

No data available for Orthologs for USP30-AS1 Gene

Paralogs for USP30-AS1 Gene

No data available for Paralogs for USP30-AS1 Gene

Variants for USP30-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP30-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000679639 -- 109,054,452(+) GAAGG(G/T)GAAGA intron-variant, upstream-variant-2KB
rs1001527856 -- 109,052,536(+) CTGGG(A/C)GCTGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001636954 -- 109,055,960(+) GGCCT(C/T)TTGAG intron-variant, upstream-variant-2KB
rs1001812646 -- 109,054,141(+) CTTCC(A/G)TGACA intron-variant, upstream-variant-2KB
rs1003845950 -- 109,052,712(+) TGACC(A/G)CGGCC intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for USP30-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422361 CNV duplication 17116639

Relevant External Links for USP30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP30-AS1 Gene

Disorders for USP30-AS1 Gene

Relevant External Links for USP30-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP30-AS1

No disorders were found for USP30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP30-AS1 Gene

Publications for USP30-AS1 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 60

Products for USP30-AS1 Gene

Sources for USP30-AS1 Gene

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