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Aliases for USP3-AS1 Gene

Subcategory (RNA class) for USP3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP3-AS1 Gene

  • USP3 Antisense RNA 1 2 3 5

External Ids for USP3-AS1 Gene

Previous GeneCards Identifiers for USP3-AS1 Gene

  • GC15M063836

Summaries for USP3-AS1 Gene

GeneCards Summary for USP3-AS1 Gene

USP3-AS1 (USP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for USP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP3-AS1 Gene

Genomics for USP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for USP3-AS1 Gene

Promoters and enhancers for USP3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I063602 Enhancer 0.5 FANTOM5 dbSUPER 550.8 -1.2 -1158 0 ZNF362 GC15M063786 USP3-AS1 FBXL22 ENSG00000259589
GH15I063831 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 25.9 -232.0 -231983 3.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 HERC1 USP3-AS1 TRIP4 ENSG00000264937 CSNK1G1 ZNF609 ENSG00000259635 USP3 ENSG00000265967 FBXL22
GH15I063593 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 22 +3.5 3481 8.5 HDGF PKNOX1 CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FBXL22 USP3 USP3-AS1 TRIP4 CSNK1G1 ZNF609 HERC1 GC15M063786
GH15I064092 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.1 -493.8 -493837 6.5 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D SNX1 FAM96A TRIP4 CSNK1G1 USP3 ENSG00000264937 USP3-AS1 SNX22 ZNF609 ENSG00000259635
GH15I063188 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 +408.7 408704 8.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A YBX1 ZBTB7B IRF4 YY1 ZNF143 RAB8B RPS27L USP3 LACTB APH1B SNX1 USP3-AS1 LOC101928972
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for USP3-AS1 Gene

Genomic Locations for USP3-AS1 Gene
chr15:63,544,247-63,601,589
(GRCh38/hg38)
Size:
57,343 bases
Orientation:
Minus strand
chr15:63,836,446-63,893,788
(GRCh37/hg19)

Genomic View for USP3-AS1 Gene

Genes around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP3-AS1 Gene

Proteins for USP3-AS1 Gene

Post-translational modifications for USP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP3-AS1 Gene

Domains & Families for USP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP3-AS1 Gene

Function for USP3-AS1 Gene

Phenotypes From GWAS Catalog for USP3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP3-AS1 Gene

Localization for USP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP3-AS1 Gene

Pathways & Interactions for USP3-AS1 Gene

SuperPathways for USP3-AS1 Gene

No Data Available

Interacting Proteins for USP3-AS1 Gene

Gene Ontology (GO) - Biological Process for USP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP3-AS1 Gene

Drugs & Compounds for USP3-AS1 Gene

No Compound Related Data Available

Transcripts for USP3-AS1 Gene

mRNA/cDNA for USP3-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP3-AS1 Gene

No ASD Table

Relevant External Links for USP3-AS1 Gene

GeneLoc Exon Structure for
USP3-AS1
ECgene alternative splicing isoforms for
USP3-AS1

Expression for USP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP3-AS1 Gene

This gene is overexpressed in Whole Blood (x5.1).
genes like me logo Genes that share expression patterns with USP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP3-AS1 Gene

Orthologs for USP3-AS1 Gene

Evolution for USP3-AS1 Gene

ENSEMBL:
Gene Tree for USP3-AS1 (if available)
TreeFam:
Gene Tree for USP3-AS1 (if available)

No data available for Orthologs for USP3-AS1 Gene

Paralogs for USP3-AS1 Gene

No data available for Paralogs for USP3-AS1 Gene

Variants for USP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP3-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000026819 -- 63,591,677(-) A/G intron_variant
rs1000055148 -- 63,587,253(-) G/C downstream_transcript_variant
rs1000069419 -- 63,602,675(-) G/C upstream_transcript_variant
rs1000312275 -- 63,597,993(-) G/C intron_variant
rs1000806560 -- 63,594,017(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for USP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv827357 CNV gain 20364138
nsv833034 CNV loss 17160897

Additional Variant Information for USP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP3-AS1 Gene

Disorders for USP3-AS1 Gene

Additional Disease Information for USP3-AS1

No disorders were found for USP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP3-AS1 Gene

Publications for USP3-AS1 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for USP3-AS1 Gene

Sources for USP3-AS1 Gene

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