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Aliases for USP3-AS1 Gene

Subcategory (RNA class) for USP3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for USP3-AS1 Gene

  • USP3 Antisense RNA 1 2 3 5

External Ids for USP3-AS1 Gene

Previous GeneCards Identifiers for USP3-AS1 Gene

  • GC15M063836

Summaries for USP3-AS1 Gene

GeneCards Summary for USP3-AS1 Gene

USP3-AS1 (USP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP3-AS1 Gene

Genomics for USP3-AS1 Gene

Regulatory Elements for USP3-AS1 Gene

Enhancers for USP3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F063495 1.6 FANTOM5 ENCODE 20.6 +100.3 100340 12.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D LACTB ZNF609 USP3-AS1 USP3 TRIP4 HERC1 ENSG00000259498 RAB8B FBXL22 LOC102723344
GH15F063593 1.1 ENCODE 23.2 +3.5 3481 8.5 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 USP3-AS1 USP3 HERC1 FBXL22 GC15M063599
GH15F063793 1.2 Ensembl ENCODE 19.5 -192.2 -192222 1.6 ATF1 PKNOX1 NFRKB PTRF KLF13 ZBTB11 USF2 CEBPB HDAC8 CREB3 USP3-AS1 HERC1 ENSG00000259498 DAPK2 RBPMS2 ZNF609 ENSG00000259589
GH15F063226 1.7 FANTOM5 Ensembl ENCODE 13.4 +368.3 368318 14.3 PKNOX1 ARNT CREB3L1 FEZF1 YY1 FOS KLF13 ZNF263 JUNB TBX21 RPS27L RAB8B APH1B ENSG00000259498 USP3-AS1 LACTB CA12 FBXL22 USP3
GH15F063668 1.2 FANTOM5 Ensembl ENCODE 13.1 -67.3 -67296 1.4 TCF7 NBN JUNB TBX21 ZBTB40 USP3-AS1 FBXL22 SNX22 DAPK2 HERC1 ENSG00000259589
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for USP3-AS1 Gene

63,544,247 bp from pter
63,601,589 bp from pter
57,343 bases
Minus strand

Genomic View for USP3-AS1 Gene

Genes around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP3-AS1 Gene

Proteins for USP3-AS1 Gene

Post-translational modifications for USP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP3-AS1 Gene

Domains & Families for USP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP3-AS1 Gene

Function for USP3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP3-AS1 Gene

Localization for USP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP3-AS1 Gene

Pathways & Interactions for USP3-AS1 Gene

SuperPathways for USP3-AS1 Gene

No Data Available

Interacting Proteins for USP3-AS1 Gene

Gene Ontology (GO) - Biological Process for USP3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for USP3-AS1 Gene

Transcripts for USP3-AS1 Gene

mRNA/cDNA for USP3-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP3-AS1 Gene

No ASD Table

Relevant External Links for USP3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for USP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP3-AS1 Gene

This gene is overexpressed in Whole Blood (x5.1).
genes like me logo Genes that share expression patterns with USP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for USP3-AS1 Gene

Orthologs for USP3-AS1 Gene

Evolution for USP3-AS1 Gene

Gene Tree for USP3-AS1 (if available)
Gene Tree for USP3-AS1 (if available)

No data available for Orthologs for USP3-AS1 Gene

Paralogs for USP3-AS1 Gene

No data available for Paralogs for USP3-AS1 Gene

Variants for USP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP3-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10018 -- 63,594,516(-) GGCAT(A/C)ATACA intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs10220905 -- 63,594,862(+) CCCAG(C/T)GAAAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11071758 -- 63,594,051(-) CACCC(C/T)GGGCC intron-variant, nc-transcript-variant, utr-variant-3-prime
rs111483215 -- 63,590,453(+) TCTCC(A/G)TTAGT intron-variant
rs111497513 -- 63,591,860(+) CTGAT(-/TGA)TTGAT intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for USP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833034 CNV loss 17160897
nsv827357 CNV gain 20364138

Relevant External Links for USP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP3-AS1 Gene

Disorders for USP3-AS1 Gene

Relevant External Links for USP3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for USP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP3-AS1 Gene

Publications for USP3-AS1 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for USP3-AS1 Gene

Sources for USP3-AS1 Gene

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