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Aliases for USP3-AS1 Gene

Subcategory (RNA class) for USP3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP3-AS1 Gene

  • USP3 Antisense RNA 1 2 3 5

External Ids for USP3-AS1 Gene

Previous GeneCards Identifiers for USP3-AS1 Gene

  • GC15M063836

Summaries for USP3-AS1 Gene

GeneCards Summary for USP3-AS1 Gene

USP3-AS1 (USP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP3-AS1 Gene

Genomics for USP3-AS1 Gene

Regulatory Elements for USP3-AS1 Gene

Enhancers for USP3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G063495 1.9 FANTOM5 ENCODE dbSUPER 20.6 +100.3 100340 12.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D LACTB ZNF609 USP3-AS1 USP3 TRIP4 HERC1 ENSG00000259498 RAB8B FBXL22 LOC102723344
GH15G063226 1.5 Ensembl ENCODE dbSUPER 13.4 +374.7 374707 1.5 PKNOX1 ATF1 ZNF766 GATA2 ELK1 KLF13 CAVIN1 ZNF592 MEF2D CREB3 USP3-AS1 RPS27L APH1B ENSG00000259498 RAB8B LACTB
GH15G063593 1.4 ENCODE dbSUPER 14.1 +3.5 3481 8.5 HDGF FOXA2 PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 USP3-AS1 USP3 HERC1 FBXL22 GC15M063599
GH15G063605 1.4 Ensembl ENCODE dbSUPER 13.6 -4.5 -4520 1.8 HDAC1 YBX3 HDGF ATF1 ARNT NFRKB ZSCAN4 TCF12 ZNF766 MIER1 USP3-AS1 USP3 DAPK2 SNX22 APH1B HERC1 ENSG00000259589
GH15G063513 1.4 Ensembl ENCODE dbSUPER 13.5 +86.5 86491 2.2 ELF3 HDAC1 FOXA2 PKNOX1 RFX5 ZNF121 FOS MIXL1 EGR2 CEBPB USP3-AS1 FBXL22 USP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000077828 389 1601 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF263 SP5

Genomic Location for USP3-AS1 Gene

Chromosome:
15
Start:
63,544,247 bp from pter
End:
63,601,589 bp from pter
Size:
57,343 bases
Orientation:
Minus strand

Genomic View for USP3-AS1 Gene

Genes around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP3-AS1 Gene

Proteins for USP3-AS1 Gene

Post-translational modifications for USP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP3-AS1 Gene

Domains & Families for USP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP3-AS1 Gene

Function for USP3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP3-AS1 Gene

Localization for USP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP3-AS1 Gene

Pathways & Interactions for USP3-AS1 Gene

SuperPathways for USP3-AS1 Gene

No Data Available

Interacting Proteins for USP3-AS1 Gene

Gene Ontology (GO) - Biological Process for USP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP3-AS1 Gene

Transcripts for USP3-AS1 Gene

mRNA/cDNA for USP3-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP3-AS1 Gene

No ASD Table

Relevant External Links for USP3-AS1 Gene

GeneLoc Exon Structure for
USP3-AS1
ECgene alternative splicing isoforms for
USP3-AS1

Expression for USP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP3-AS1 Gene

This gene is overexpressed in Whole Blood (x5.1).
genes like me logo Genes that share expression patterns with USP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP3-AS1 Gene

Orthologs for USP3-AS1 Gene

Evolution for USP3-AS1 Gene

ENSEMBL:
Gene Tree for USP3-AS1 (if available)
TreeFam:
Gene Tree for USP3-AS1 (if available)

No data available for Orthologs for USP3-AS1 Gene

Paralogs for USP3-AS1 Gene

No data available for Paralogs for USP3-AS1 Gene

Variants for USP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP3-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000026819 -- 63,591,677(+) TCACG(A/G)CATGT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1000055148 -- 63,587,253(+) TAGGA(C/G)AGGCC intron-variant
rs1000069419 -- 63,602,675(+) CAAGA(C/G)ATTGG intron-variant, upstream-variant-2KB
rs1000312275 -- 63,597,993(+) AAGAA(C/G)TGGGG intron-variant, utr-variant-5-prime
rs1000806560 -- 63,594,017(+) CAGAT(A/G)TACTA intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for USP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv827357 CNV gain 20364138
nsv833034 CNV loss 17160897

Relevant External Links for USP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP3-AS1 Gene

Disorders for USP3-AS1 Gene

Relevant External Links for USP3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP3-AS1

No disorders were found for USP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP3-AS1 Gene

Publications for USP3-AS1 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for USP3-AS1 Gene

Sources for USP3-AS1 Gene

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