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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

USP3 Gene

protein-coding   GIFtS: 53
GCID: GC15P063796

ubiquitin specific peptidase 3

(Previous name: ubiquitin specific protease 3 )
 Explore 1 disease affiliated with
USP3 via our new
 Human Malady Compendium 
Biological research products
for USP3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ubiquitin Specific Peptidase 31 2     UBP2
Deubiquitinating Enzyme 32 3     Ubiquitin Carboxyl-Terminal Hydrolase 32
Ubiquitin Thioesterase 32 3     Ubiquitin Thiolesterase 32
Ubiquitin-Specific-Processing Protease 32 3     EC 3.4.19.123
Ubiquitin Specific Protease 31     EC 3.1.2.158
SIH0032     

External Ids:    HGNC: 126261   Entrez Gene: 99602   Ensembl: ENSG000001404557   OMIM: 6047285   UniProtKB: Q9Y6I43   

Export aliases for USP3 gene to outside databases

Previous GC identifers: GC15P059583 GC15P056887 GC15P061375 GC15P061512 GC15P061511 GC15P061582 GC15P040621


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UBP3_HUMAN, Q9Y6I4
Function: Hydrolase that deubiquitinates monoubiquitinated target proteins such as histone H2A and H2B. Required for
proper progression through S phase and subsequent mitotic entry. May regulate the DNA damage response (DDR) checkpoint
through deubiquitination of H2A at DNA damage sites. Associates with the chromatin




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NC_018926.1  NT_010194.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the USP3 gene promoter:
         AML1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUSP3 promoter sequence
   Search SABiosciences Chromatin IP Primers for USP3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat USP3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q22.3   Ensembl cytogenetic band:  15q22.31   HGNC cytogenetic band: 15q22.3

USP3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
USP3 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15P063796:  view genomic region     (about GC identifiers)

Start:
63,796,793 bp from pter      End:
63,886,839 bp from pter
Size:
90,047 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UBP3_HUMAN, Q9Y6I4 (See protein sequence)
Recommended Name: Ubiquitin carboxyl-terminal hydrolase 3  
Size: 520 amino acids; 58897 Da
Subunit: Interacts (via UBP-type domain) with H2A; the interaction is less efficient than with monoubiquitinated H2A
Subcellular location: Nucleus. Note=Localizes preferentially with monoubiquitinated H2A to chromatin
Sequence caution: Sequence=AAD42992.1; Type=Frameshift; Positions=265, 274, 299;
Secondary accessions: B4DVU5 F5H1A6 Q8WVD0
Alternative splicing: 2 isoforms:  Q9Y6I4-1   Q9Y6I4-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for USP3: NX_Q9Y6I4

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9Y6I4

  • 4 DME Specific Peptides for USP3 (Q9Y6I4)
     NLGNTCF  AVVVHHG  GNTCFMN  QQDAHEF 

    USP3 Protein expression data from MOPED and PaxDb:    About this image 
    USP3 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001243631.1  NP_006528.2  

    ENSEMBL proteins: 
     ENSP00000453688   ENSP00000453194   ENSP00000369681   ENSP00000454043   ENSP00000452929  
     ENSP00000453767   ENSP00000453228   ENSP00000453093   ENSP00000454197   ENSP00000453619  
     ENSP00000452947   ENSP00000445793   ENSP00000453138   ENSP00000453489   ENSP00000445828  
     ENSP00000445615   ENSP00000268049   ENSP00000445642  

    Human Recombinant Protein Products for USP3: 
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    Novus Biologicals USP3 Proteins
    Novus Biologicals USP3 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for USP3

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000790nuclear chromatin IDA17980597

    USP3 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for USP3


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    USP3 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001394 Peptidase_C19
     IPR001607 Znf_UBP
     IPR018200 Pept_C19ubi-hydrolase_C_CS
     IPR013083 Znf_RING/FYVE/PHD

    Graphical View of Domain Structure for InterPro Entry Q9Y6I4

    ProtoNet protein and cluster: Q9Y6I4

    2 Blocks protein families:
    IPB001394 Ubiquitin thiolesterase
    IPB001607 Zn-finger in ubiquitin thiolesterase


    UniProtKB/Swiss-Prot: UBP3_HUMAN, Q9Y6I4
    Domain: Both protease activity and an intact zinc finger are required for H2A monodeubiquitination
    Similarity: Belongs to the peptidase C19 family. USP3 subfamily
    Similarity: Contains 1 UBP-type zinc finger


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: UBP3_HUMAN, Q9Y6I4
    Function: Hydrolase that deubiquitinates monoubiquitinated target proteins such as histone H2A and H2B. Required for
    proper progression through S phase and subsequent mitotic entry. May regulate the DNA damage response (DDR) checkpoint
    through deubiquitination of H2A at DNA damage sites. Associates with the chromatin
    Catalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the
    C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)

         Genatlas biochemistry entry for USP3:
    ubiquitin specific protease 3,with two transcripts,both widely expressed at a low level and highly expressed in
    pancreas,cleaving a ubiquitin-proline bond,deubiquitin enzyme family

         Enzyme Numbers (IUBMB): EC 3.1.2.152 EC 3.4.19.121

         Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004221ubiquitin thiolesterase activity IMP17980597
    GO:0004843ubiquitin-specific protease activity TAS10480896
    GO:0008234cysteine-type peptidase activity ----
    GO:0008270zinc ion binding IEA--
    GO:0016787hydrolase activity ----
         
    USP3 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for USP3 

    miRNA
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    8/26 QIAGEN miScript miRNA Assays for microRNAs that regulate USP3 (see all 26):
    hsa-miR-146a hsa-miR-15a hsa-miR-106a hsa-miR-519a hsa-miR-1297 hsa-miR-424 hsa-miR-93 hsa-miR-195
    SwitchGear 3'UTR luciferase reporter plasmidUSP3 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for USP3 (see all 7)
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    Sirion Biotech Custom design and validation of potent shRNA sequences against USP3 

    Gene Editing
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    Clone
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Ubiquitin-Proteasome Dependent Proteolysis
    Ubiquitin-Proteasome Dependent Proteolysis1.00

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for USP3
        Ubiquitin-Proteasome Dependent Proteolysis


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for USP3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 23)

    5/27 Interacting proteins for USP3 (Q9Y6I43 ENSP000003696814) via UniProtKB, MINT, STRING, and/or I2D (see all 27)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EIF3CQ996133, ENSP000003326044I2D: score=2 STRING: ENSP00000332604
    EIF3CLQ996133, ENSP000003702584I2D: score=2 STRING: ENSP00000370258
    EIF3BP558843, ENSP000003541254I2D: score=2 STRING: ENSP00000354125
    EIF3HO153723, ENSP000002766824I2D: score=2 STRING: ENSP00000276682
    EIF3IQ133473, ENSP000003626884I2D: score=2 STRING: ENSP00000362688
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000278mitotic cell cycle IMP17980597
    GO:0006281DNA repair IMP17980597
    GO:0006511ubiquitin-dependent protein catabolic process IEA--
    GO:0016578histone deubiquitination IDA17980597
    GO:0031647regulation of protein stability IDA17980597

    USP3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for USP3

    1 HMDB Compound for USP3    About this table
    CompoundSynonyms CAS #PubMed Ids
    WaterDihydrogen oxide (see all 2)7732-18-5--
    Search CenterWatch for drugs/clinical trials and news about USP3 / UBP3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for USP3 gene (2 alternative transcripts): 
    NM_001256702.1  NM_006537.3  

    Unigene Cluster for USP3:

    Ubiquitin specific peptidase 3
    Hs.458499  [show with all ESTs]
    Unigene Representative Sequence: NR_046341
    18/23 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 23):
    ENST00000561442 ENST00000560070 ENST00000380324(uc010uii.1 uc002amf.3 uc002amg.3 uc010uij.2 uc010uik.2 uc010bgs.3)
    ENST00000557884 ENST00000558157 ENST00000561326 ENST00000559873 ENST00000559192
    ENST00000559771 ENST00000559276 ENST00000558285 ENST00000559257 ENST00000538686(uc002ami.3)
    ENST00000559711 ENST00000558925 ENST00000558218 ENST00000561381 ENST00000559718


    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat USP3
    8/26 QIAGEN miScript miRNA Assays for microRNAs that regulate USP3 (see all 26):
    hsa-miR-146a hsa-miR-15a hsa-miR-106a hsa-miR-519a hsa-miR-1297 hsa-miR-424 hsa-miR-93 hsa-miR-195
    SwitchGear 3'UTR luciferase reporter plasmidUSP3 3' UTR sequence
    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for USP3 (see all 7)
    OriGene shRNA RFP: USP3
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat USP3
    Sirion Biotech Custom design and validation of potent shRNA sequences against USP3 
    Clone
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    GenScript: all cDNA clones in your preferred vector: USP3 (NM_004090)
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat USP3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat USP3

    Additional cDNA sequence: 

    AF073344.1 AF077040.1 AK022931.1 AK094444.1 AK300948.1 AK301236.1 AK301563.1 AK307810.1 
    AK309382.1 AK314223.1 AY461579.1 BC018113.2 BC065300.1 BC100029.1 BC107137.1 BC107138.1 
    BT007269.1 BX647760.1 NR_046341.1 NR_046342.1 

    24 DOTS entries:

    DT.427727  DT.213931  DT.86853868  DT.91914274  DT.100798066  DT.91993798  DT.92027113  DT.100008322 
    DT.121069165  DT.92409463  DT.95082713  DT.97829482  DT.100689433  DT.121069083  DT.121069107  DT.121069145 
    DT.40132237  DT.86857742  DT.95082709  DT.97841560  DT.40117767  DT.40305161  DT.75162765  DT.97841559 

    24/230 AceView cDNA sequences (see all 230):

    CD369463 BI770143 CA489578 CB159645 AI291397 AU142702 C05514 AI334394 
    BE503404 AA830044 BM788363 AA906958 AY461579 BU188287 Z39017 BG503991 
    T10839 AA935853 AW467585 BQ109158 AA312257 BG944820 BC018113 AI368920 

    GeneLoc Exon Structure

    5/14 Alternative Splicing Database (ASD) splice patterns (SP) for USP3 (see all 14)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17a ·
    SP1:                                      -           -           -     -                                                           -                 -     -   
    SP2:                                      -     -     -           -                                                                 -                 -     -   
    SP3:                                      -     -     -           -     -                                                           -                 -     -   
    SP4:                                      -           -           -                                                                                             
    SP5:                                      -     -     -           -     -     -                                                                                 

    ExUns: 17b ^ 18a · 18b ^ 19 ^ 20a · 20b · 20c · 20d
    SP1:        -                                       
    SP2:        -                                       
    SP3:        -                                       
    SP4:                                                
    SP5:                                                


    ECgene alternative splicing isoforms for USP3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    USP3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGTGCACAAT
    USP3 Expression
    About this image
    See USP3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for USP3

    SOURCE GeneReport for Unigene cluster: Hs.458499

    UniProtKB/Swiss-Prot: UBP3_HUMAN, Q9Y6I4
    Tissue specificity: Expressed in all tissues examined, with strongest expression in pancreas

        SABiosciences Expression via Pathway-Focused PCR Array including USP3: 
              Polycomb & Trithorax Target Genes in human mouse rat

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for USP3 gene from 6/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves USP31 ubiquitin specific peptidase 3 86.79(n)
    95.77(a)
      415369  XM_413755.3  XP_413755.3 
    lizard
    (Anolis carolinensis)
    Reptilia USP36
    --
    88(a)
    1 ↔ 1
    GL343573.1(4335-15524)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.154902 Xenopus laevis transcribed sequence with moderate similarity more 79.42(n)    BU906546.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufe50h062 Danio rerio cDNA clone IMAGE5915429, partial cds 77.05(n)    BC059202.1 
    mosquito
    (Anopheles gambiae)
    Insecta AgaP_AGAP0088051 AGAP008805-PA 52.53(n)
    50(a)
      1275662  XM_314931.4  XP_314931.4 
    worm
    (Caenorhabditis elegans)
    Secernentea usp-31 Protein USP-3 49.44(n)
    42.42(a)
      190579  NM_061033.2  NP_493434.2 


    ENSEMBL Gene Tree for USP3 (if available)
    TreeFam Gene Tree for USP3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for USP3 gene
    USP332  USP442  USP162  USP452  USP512  USP222  USP492  USP202  
    16 SIMAP similar genes for USP3 using alignment to 16 protein entries:     UBP3_HUMAN (see all proteins):
    USP15    BRAP    USP48    USP4    USP33    HDAC6
    USP36    USP17L13    USP42    USP8    USP39    USP44
    USP19    USP2    USP11    USP12

    USP3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1528 NCBI SNPs in USP3 are shown (see all 1528    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs113112041,2
    F--40708964(+) GGTGGT/-TTTTT 1 -- nc-transcript-varianttrp32Minor allele frequency- -:0.50NA CSA 4
    rs349236511,2
    C,F--40709389(+) TGACC-/TTTTTT 1 -- nc-transcript-variant3Minor allele frequency- T:0.33NA CSA 6
    rs776914941,2
    F--63794729(+) TGGGAA/GAGGGT 4 -- us2k11Minor allele frequency- G:0.02WA 118
    rs1887471821,2
    --63794856(+) GTCATA/GCTCCA 4 -- us2k10--------
    rs740229841,2
    C--63794924(+) GGTTGG/ATGGAG 4 -- us2k12Minor allele frequency- A:0.04WA 120
    rs2898161,2
    C,F,A,H--63794961(-) ATCTCT/CCCATG 4 -- us2k120Minor allele frequency- C:0.35NS EA NA WA 2524
    rs1461330151,2
    --63794988(+) GCCAAC/GGGCAG 4 -- us2k10--------
    rs1388738411,2
    --63795005(+) TTGTTC/TCTCCT 4 -- us2k10--------
    rs1932792571,2
    --63795122(+) CACATA/GTTCCT 4 -- us2k10--------
    rs1428075741,2
    --63795281(+) ACAACG/TCATCA 4 -- us2k10--------

    HapMap Linkage Disequilibrium report for USP3 (63796793 - 63886839 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for USP3
         1 CNV: 87707

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    DNA2.0 Custom Variant and Variant Library Synthesis for USP3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    USP3 for disorders           About GeneDecksing

    OMIM gene information: 604728    OMIM disorders: --

    1 disease for USP3:    About MalaCards
    malaria

    Human Genome Epidemiology (HuGE) Navigator: USP3 (2 documents)

    Export disorders for USP3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for USP3 gene, integrated from 9 sources (see all 24):
    (articles sorted by number of sources associating them with USP3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization and chromosomal localization of USP3, a novel human ubiquitin-specific protease. (PubMed id 10480896)1, 2, 9 Sloper-Mould K.E.... Baker R.T. (1999)
    2. Human USP3 is a chromatin modifier required for S phase progression and genome stability. (PubMed id 17980597)1, 2 Nicassio F....Citterio E. (2007)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Human and mouse proteases: a comparative genomic approach. (PubMed id 12838346)1, 3 Puente X.S.... Lopez-Otin C. (2003)
    5. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    6. UCP3 polymorphisms, hand grip performance and survival at old age: association analysis in two Danish middle aged and elderly cohorts. (PubMed id 22743239)1 Dato S....Christiansen L. (2012)
    7. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    8. Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)1 Altun M....Kessler B.M. (2011)
    9. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    10. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9960 HGNC: 12626 AceView: USP3 Ensembl:ENSG00000140455 euGenes: HUgn9960
    ECgene: USP3 H-InvDB: USP3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for USP3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for USP3 gene:
    Search GeneIP for patents involving USP3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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     Regulatory tfbs in USP3 promoter
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