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Aliases for USP29 Gene

Aliases for USP29 Gene

  • Ubiquitin Specific Peptidase 29 2 3
  • Ubiquitin-Specific-Processing Protease 29 3 4
  • Deubiquitinating Enzyme 29 3 4
  • Ubiquitin Thioesterase 29 3 4
  • Ubiquitin Carboxyl-Terminal Hydrolase 29 3
  • Ubiquitin-Specific Processing Protease 3
  • Ubiquitin Specific Protease 29 2
  • Ubiquitin Thiolesterase 29 3
  • HOM-TES-84/86 3
  • EC 3.4.19.12 4
  • EC 3.1.2.15 63

External Ids for USP29 Gene

Previous GeneCards Identifiers for USP29 Gene

  • GC19P058538
  • GC19P058094
  • GC19P062316
  • GC19P062331
  • GC19P057631
  • GC19P053944

Summaries for USP29 Gene

GeneCards Summary for USP29 Gene

USP29 (Ubiquitin Specific Peptidase 29) is a Protein Coding gene. Among its related pathways are Ubiquitin-Proteasome Dependent Proteolysis. GO annotations related to this gene include ubiquitin thiolesterase activity and cysteine-type peptidase activity. An important paralog of this gene is USP26.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP29 Gene

Genomics for USP29 Gene

Regulatory Elements for USP29 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for USP29 Gene

Start:
57,119,138 bp from pter
End:
57,131,926 bp from pter
Size:
12,789 bases
Orientation:
Plus strand

Genomic View for USP29 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for USP29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP29 Gene

Proteins for USP29 Gene

  • Protein details for USP29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBJ7-UBP29_HUMAN
    Recommended name:
    Ubiquitin carboxyl-terminal hydrolase 29
    Protein Accession:
    Q9HBJ7
    Secondary Accessions:

    Protein attributes for USP29 Gene

    Size:
    922 amino acids
    Molecular mass:
    104156 Da
    Quaternary structure:
    No Data Available

neXtProt entry for USP29 Gene

Proteomics data for USP29 Gene at MOPED

Selected DME Specific Peptides for USP29 Gene

Post-translational modifications for USP29 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for USP29 Gene

Domains for USP29 Gene

Gene Families for USP29 Gene

HGNC:
  • USP :Ubiquitin-specific peptidases

Protein Domains for USP29 Gene

Suggested Antigen Peptide Sequences for USP29 Gene

Graphical View of Domain Structure for InterPro Entry

Q9HBJ7

UniProtKB/Swiss-Prot:

UBP29_HUMAN :
  • Q9HBJ7
Domain:
  • Contains 1 USP domain.
Family:
  • Belongs to the peptidase C19 family.
genes like me logo Genes that share domains with USP29: view

Function for USP29 Gene

Molecular function for USP29 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)

Enzyme Numbers (IUBMB) for USP29 Gene

Gene Ontology (GO) - Molecular Function for USP29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004197 cysteine-type endopeptidase activity IBA --
GO:0004221 ubiquitin thiolesterase activity --
GO:0004843 ubiquitin-specific protease activity IBA --
GO:0008234 cysteine-type peptidase activity --
GO:0036459 ubiquitinyl hydrolase activity --
genes like me logo Genes that share ontologies with USP29: view

Phenotypes for USP29 Gene

MGI mutant phenotypes for USP29:
inferred from 3 alleles
genes like me logo Genes that share phenotypes with USP29: view

Animal Model Products

miRNA for USP29 Gene

miRTarBase miRNAs that target USP29

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for USP29

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for USP29 Gene

Localization for USP29 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for USP29 Gene COMPARTMENTS Subcellular localization image for USP29 gene
Compartment Confidence
cytosol 2
extracellular 2
mitochondrion 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for USP29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with USP29: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for USP29 Gene

Pathways for USP29 Gene

genes like me logo Genes that share pathways with USP29: view

Pathways by source for USP29 Gene

1 Qiagen pathway for USP29 Gene

Gene Ontology (GO) - Biological Process for USP29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process --
GO:0016579 protein deubiquitination IBA --
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA --
GO:0061136 regulation of proteasomal protein catabolic process IBA --
genes like me logo Genes that share ontologies with USP29: view

Compounds for USP29 Gene

(1) HMDB Compounds for USP29 Gene

Compound Synonyms Cas Number PubMed IDs
Water
  • Dihydrogen oxide
7732-18-5
genes like me logo Genes that share compounds with USP29: view

Transcripts for USP29 Gene

mRNA/cDNA for USP29 Gene

(5) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for USP29 Gene

Ubiquitin specific peptidase 29:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for USP29

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for USP29 Gene

No ASD Table

Relevant External Links for USP29 Gene

GeneLoc Exon Structure for
USP29
ECgene alternative splicing isoforms for
USP29

Expression for USP29 Gene

mRNA expression in normal human tissues for USP29 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for USP29 Gene

This gene is overexpressed in Testis (49.0).

Protein differential expression in normal tissues for USP29 Gene

This gene is overexpressed in Cerebrospinal fluid (32.0), Heart (16.3), Cervix (11.0), and Esophagus (6.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for USP29 Gene

SOURCE GeneReport for Unigene cluster for USP29 Gene Hs.515632

genes like me logo Genes that share expressions with USP29: view

Expression partners for USP29 Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for USP29 Gene

Orthologs for USP29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for USP29 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Usp29 35
  • 64.65 (n)
  • 48.24 (a)
Usp29 16
Usp29 36
  • 43 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia USP29 35
  • 98.92 (n)
  • 97.94 (a)
rat
(Rattus norvegicus)
Mammalia Usp29 35
  • 63.77 (n)
  • 47.1 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 18 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii USP29 36
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2829 36
  • 25 (a)
OneToMany
Species with no ortholog for USP29:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for USP29 Gene

ENSEMBL:
Gene Tree for USP29 (if available)
TreeFam:
Gene Tree for USP29 (if available)

Paralogs for USP29 Gene

Paralogs for USP29 Gene

Selected SIMAP similar genes for USP29 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with USP29: view

Variants for USP29 Gene

Sequence variations from dbSNP and Humsavar for USP29 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1027392 - 57,129,778(+) TGGCA(A/G)CATGC reference, missense
rs2201524 -- 57,132,087(+) gatct(G/T)tccgg downstream-variant-500B
rs3764574 -- 57,130,730(-) TGAGG(C/T)ACCTC synonymous-codon, reference
rs3795003 - 57,130,431(-) GGATT(C/T)TGAGG missense, reference
rs4292020 -- 57,125,926(+) tagtg(A/C)ttcct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for USP29 Gene

Variant ID Type Subtype PubMed ID
nsv912523 CNV Gain 21882294

Relevant External Links for USP29 Gene

HapMap Linkage Disequilibrium report
USP29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for USP29 Gene

Disorders for USP29 Gene

(1) University of Copenhagen DISEASES for USP29 Gene

Relevant External Links for USP29

Human Genome Epidemiology (HuGE) Navigator
USP29
genes like me logo Genes that share disorders with USP29: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships and Genatlas for USP29 Gene

Publications for USP29 Gene

  1. Discovery of a novel, paternally expressed ubiquitin-specific processing protease gene through comparative analysis of an imprinted region of mouse chromosome 7 and human chromosome 19q13.4. (PMID: 10958632) Kim J. … Stubbs L. (Genome Res. 2000) 3 4 23
  2. Human and mouse proteases: a comparative genomic approach. (PMID: 12838346) Puente X.S. … Lopez-Otin C. (Nat. Rev. Genet. 2003) 2 3
  3. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3
  4. JTV1 co-activates FBP to induce USP29 transcription and stabilize p53 in response to oxidative stress. (PMID: 21285945) Liu J. … Levens D. (EMBO J. 2011) 3
  5. USP29 controls the stability of checkpoint adaptor Claspin by deubiquitination. (PMID: 24632611) MartA-n Y. … Freire R. (Oncogene 2015) 3

Products for USP29 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate USP29
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for USP29
    • Block miRNA regulation of USP29 using miScript Target Protectors
    • Addgene plasmids for USP29

    Sources for USP29 Gene

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