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Aliases for USP27X-AS1 Gene

Subcategory (RNA class) for USP27X-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP27X-AS1 Gene

  • USP27X Antisense RNA 1 (Head To Head) 2 3 5

External Ids for USP27X-AS1 Gene

Previous GeneCards Identifiers for USP27X-AS1 Gene

  • GC0XM049643

Summaries for USP27X-AS1 Gene

GeneCards Summary for USP27X-AS1 Gene

USP27X-AS1 (USP27X Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP27X-AS1 Gene

Genomics for USP27X-AS1 Gene

Regulatory Elements for USP27X-AS1 Gene

Enhancers for USP27X-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG049163 1.4 ENCODE dbSUPER 11.6 +713.3 713319 5.5 HDGF PKNOX1 FOXA2 CREB3L1 SIN3A ZNF2 YY1 ZNF207 ZNF143 FOS USP27X-AS1 RN7SL262P CACNA1F PLP2 GC0XP049169 ENSG00000279422
GH0XG049976 1.1 Ensembl ENCODE 12.7 -99.0 -99002 3.0 ZFP64 ZNF140 ZNF266 FEZF1 ZNF697 POLR2A ZNF354C PRDM10 ZNF433 TCF7L2 USP27X-AS1 MIR532 MIR188 MIR501 MIR500B MIR500A MIR362 PRAF2 CLCN5 GC0XP049999
GH0XG048896 1.1 ENCODE 11.6 +981.3 981329 3.1 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 FOS USP27X-AS1 ZNF182 RN7SL262P ZNF630 PQBP1 TIMM17B
GH0XG049000 1 ENCODE 11.6 +877.2 877248 2.3 PKNOX1 ATF1 ARNT WRNIP1 SIN3A GLI4 BRCA1 YY1 GLIS2 KLF7 USP27X-AS1 ZNF182 RN7SL262P ZNF630 GRIPAP1 KCND1
GH0XG049266 1.1 ENCODE 3.9 +610.5 610547 4.7 HDGF FOXA2 PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A ZNF2 YY1 ENSG00000204620 PRICKLE3 ENSG00000270012 PLP2 CACNA1F USP27X-AS1 FOXP3 CCDC22
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP27X-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000246581 -44 2001 HDGF ZFP64 SIN3A DMAP1 ZNF48 ZNF143 FOS SP3 SP5 CTCF

Genomic Location for USP27X-AS1 Gene

Chromosome:
X
Start:
49,876,724 bp from pter
End:
49,879,356 bp from pter
Size:
2,633 bases
Orientation:
Minus strand

Genomic View for USP27X-AS1 Gene

Genes around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP27X-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP27X-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP27X-AS1 Gene

Proteins for USP27X-AS1 Gene

Post-translational modifications for USP27X-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP27X-AS1 Gene

Domains & Families for USP27X-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Function for USP27X-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP27X-AS1 Gene

Localization for USP27X-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP27X-AS1 Gene

Pathways & Interactions for USP27X-AS1 Gene

SuperPathways for USP27X-AS1 Gene

No Data Available

Interacting Proteins for USP27X-AS1 Gene

Gene Ontology (GO) - Biological Process for USP27X-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP27X-AS1 Gene

Transcripts for USP27X-AS1 Gene

mRNA/cDNA for USP27X-AS1 Gene

(1) REFSEQ mRNAs :
(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP27X-AS1 Gene

No ASD Table

Relevant External Links for USP27X-AS1 Gene

GeneLoc Exon Structure for
USP27X-AS1
ECgene alternative splicing isoforms for
USP27X-AS1

Expression for USP27X-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP27X-AS1 Gene

genes like me logo Genes that share expression patterns with USP27X-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP27X-AS1 Gene

Orthologs for USP27X-AS1 Gene

Evolution for USP27X-AS1 Gene

ENSEMBL:
Gene Tree for USP27X-AS1 (if available)
TreeFam:
Gene Tree for USP27X-AS1 (if available)

No data available for Orthologs for USP27X-AS1 Gene

Paralogs for USP27X-AS1 Gene

No data available for Paralogs for USP27X-AS1 Gene

Variants for USP27X-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP27X-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs886038210 Pathogenic 49,881,330(+) GCCTC(-/AAGTA)AAGAG upstream-variant-2KB, reference, frameshift-variant
rs879255359 Uncertain significance 49,880,468(+) AACCA(A/C)ACCAG upstream-variant-2KB, reference, missense
rs1003740663 -- 49,877,101(+) TCCAC(A/G)TAAGG nc-transcript-variant
rs1003791734 -- 49,877,662(+) ACCTC(A/G)GTTGT nc-transcript-variant
rs1007627199 -- 49,876,451(+) GCCTT(A/G)TAATC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for USP27X-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv6902 CNV insertion 18451855

Relevant External Links for USP27X-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP27X-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP27X-AS1 Gene

Disorders for USP27X-AS1 Gene

Relevant External Links for USP27X-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP27X-AS1

No disorders were found for USP27X-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP27X-AS1 Gene

Publications for USP27X-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for USP27X-AS1 Gene

Sources for USP27X-AS1 Gene

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