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Aliases for USP27X-AS1 Gene

Subcategory (RNA class) for USP27X-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP27X-AS1 Gene

  • USP27X Antisense RNA 1 (Head To Head) 2 3 5

External Ids for USP27X-AS1 Gene

Previous GeneCards Identifiers for USP27X-AS1 Gene

  • GC0XM049643

Summaries for USP27X-AS1 Gene

GeneCards Summary for USP27X-AS1 Gene

USP27X-AS1 (USP27X Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for USP27X-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP27X-AS1 Gene

Genomics for USP27X-AS1 Gene

GeneHancer (GH) Regulatory Elements for USP27X-AS1 Gene

Promoters and enhancers for USP27X-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI049876 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.7 706 3.5 HDGF PKNOX1 ATF1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 USP27X USP27X-AS1 CLCN5 PAGE4
GH0XI049266 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 3.9 +610.5 610547 4.7 HDGF PKNOX1 SIN3A ZNF2 YY1 POLR2B E2F8 ZNF143 FOS KLF13 FOXP3 PPP1R3F ENSG00000204620 FTSJ1 PRICKLE3 ENSG00000270012 RBM3 PLP2 CACNA1F USP27X-AS1
GH0XI049860 Enhancer 0.8 ENCODE 0.4 +17.6 17571 2.6 ELF3 FOXA2 RARA TCF12 GATA2 CREM THAP11 ZEB2 NFIC SMARCA4 PAGE4 USP27X-AS1
GH0XI049840 Enhancer 0.9 ENCODE 0.3 +37.1 37098 3.8 HDAC1 ELF3 PKNOX1 FOXA2 ARID4B BMI1 RAD21 ZBTB40 RFX5 RARA CLCN5 PPP1R3F PAGE4 USP27X-AS1
GH0XI049829 Promoter 0.8 EPDnew 0.2 +50.1 50054 0.1 MITF USF1 L3MBTL2 USF2 REST PAGE4 USP27X-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for USP27X-AS1 Gene

Genomic Locations for USP27X-AS1 Gene
chrX:49,876,724-49,879,356
(GRCh38/hg38)
Size:
2,633 bases
Orientation:
Minus strand
chrX:49,641,327-49,643,959
(GRCh37/hg19)

Genomic View for USP27X-AS1 Gene

Genes around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP27X-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP27X-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP27X-AS1 Gene

Proteins for USP27X-AS1 Gene

Post-translational modifications for USP27X-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP27X-AS1 Gene

Domains & Families for USP27X-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Function for USP27X-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP27X-AS1 Gene

Localization for USP27X-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP27X-AS1 Gene

Pathways & Interactions for USP27X-AS1 Gene

SuperPathways for USP27X-AS1 Gene

No Data Available

Interacting Proteins for USP27X-AS1 Gene

Gene Ontology (GO) - Biological Process for USP27X-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP27X-AS1 Gene

Drugs & Compounds for USP27X-AS1 Gene

No Compound Related Data Available

Transcripts for USP27X-AS1 Gene

mRNA/cDNA for USP27X-AS1 Gene

(1) REFSEQ mRNAs :
(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP27X-AS1 Gene

No ASD Table

Relevant External Links for USP27X-AS1 Gene

GeneLoc Exon Structure for
USP27X-AS1
ECgene alternative splicing isoforms for
USP27X-AS1

Expression for USP27X-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP27X-AS1 Gene

genes like me logo Genes that share expression patterns with USP27X-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP27X-AS1 Gene

Orthologs for USP27X-AS1 Gene

Evolution for USP27X-AS1 Gene

ENSEMBL:
Gene Tree for USP27X-AS1 (if available)
TreeFam:
Gene Tree for USP27X-AS1 (if available)

No data available for Orthologs for USP27X-AS1 Gene

Paralogs for USP27X-AS1 Gene

No data available for Paralogs for USP27X-AS1 Gene

Variants for USP27X-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP27X-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs886038210 pathogenic, Mental retardation, X-linked 105 49,881,330(-) AAGTAAAG/AAG upstream_transcript_variant
rs879255359 uncertain-significance, not specified 49,880,468(-) A/C upstream_transcript_variant
rs1003740663 -- 49,877,101(-) A/G non_coding_transcript_variant
rs1003791734 -- 49,877,662(-) G/A non_coding_transcript_variant
rs1007627199 -- 49,876,451(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for USP27X-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv6902 CNV insertion 18451855

Additional Variant Information for USP27X-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP27X-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP27X-AS1 Gene

Disorders for USP27X-AS1 Gene

Additional Disease Information for USP27X-AS1

No disorders were found for USP27X-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP27X-AS1 Gene

Publications for USP27X-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for USP27X-AS1 Gene

Sources for USP27X-AS1 Gene

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