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Aliases for USP27X-AS1 Gene

Subcategory (RNA class) for USP27X-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP27X-AS1 Gene

  • USP27X Antisense RNA 1 (Head To Head) 2 3 5

External Ids for USP27X-AS1 Gene

Previous GeneCards Identifiers for USP27X-AS1 Gene

  • GC0XM049643

Summaries for USP27X-AS1 Gene

GeneCards Summary for USP27X-AS1 Gene

USP27X-AS1 (USP27X Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for USP27X-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP27X-AS1 Gene

Genomics for USP27X-AS1 Gene

Regulatory Elements for USP27X-AS1 Gene

Enhancers for USP27X-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH049266 1 ENCODE 3.9 +610.5 610547 4.7 HDGF PKNOX1 ATF1 SIN3A GLI4 BRCA1 ZNF2 YY1 GLIS2 ZNF143 ENSG00000204620 FTSJ1 PRICKLE3 ENSG00000270012 RBM3 PLP2 CACNA1F USP27X-AS1 FOXP3 CCDC22
GH0XH049876 1 ENCODE 0.7 +0.7 719 3.5 HDGF PKNOX1 ATF1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 CLCN5 PAGE4 USP27X-AS1
GH0XH049860 0.8 ENCODE 0.4 +17.6 17571 2.6 ELF3 SOX13 FOXA2 SAP130 TAL1 RARA ZNF7 CCNT2 TCF12 GATA2 PAGE4 USP27X-AS1
GH0XH049840 0.9 ENCODE 0.3 +37.1 37099 3.8 HDAC1 ELF3 PKNOX1 FOXA2 ARID4B BMI1 ZBTB40 RAD21 RFX5 RARA CLCN5 PPP1R3F PAGE4 USP27X-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP27X-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000246581 -44 2001 HDAC1 HDGF ZFP64 ZNF76 SIN3A DMAP1 EGR1 ZNF366 ZNF143 FOS

Genomic Locations for USP27X-AS1 Gene

Genomic Locations for USP27X-AS1 Gene
chrX:49,876,724-49,879,356
(GRCh38/hg38)
Size:
2,633 bases
Orientation:
Minus strand
chrX:49,641,327-49,643,959
(GRCh37/hg19)

Genomic View for USP27X-AS1 Gene

Genes around USP27X-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP27X-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP27X-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP27X-AS1 Gene

Proteins for USP27X-AS1 Gene

Post-translational modifications for USP27X-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP27X-AS1 Gene

Domains & Families for USP27X-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Function for USP27X-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP27X-AS1 Gene

Localization for USP27X-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP27X-AS1 Gene

Pathways & Interactions for USP27X-AS1 Gene

SuperPathways for USP27X-AS1 Gene

No Data Available

Interacting Proteins for USP27X-AS1 Gene

Gene Ontology (GO) - Biological Process for USP27X-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP27X-AS1 Gene

Drugs & Compounds for USP27X-AS1 Gene

No Compound Related Data Available

Transcripts for USP27X-AS1 Gene

mRNA/cDNA for USP27X-AS1 Gene

(1) REFSEQ mRNAs :
(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP27X-AS1 Gene

No ASD Table

Relevant External Links for USP27X-AS1 Gene

GeneLoc Exon Structure for
USP27X-AS1
ECgene alternative splicing isoforms for
USP27X-AS1

Expression for USP27X-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP27X-AS1 Gene

genes like me logo Genes that share expression patterns with USP27X-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP27X-AS1 Gene

Orthologs for USP27X-AS1 Gene

Evolution for USP27X-AS1 Gene

ENSEMBL:
Gene Tree for USP27X-AS1 (if available)
TreeFam:
Gene Tree for USP27X-AS1 (if available)

No data available for Orthologs for USP27X-AS1 Gene

Paralogs for USP27X-AS1 Gene

No data available for Paralogs for USP27X-AS1 Gene

Variants for USP27X-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP27X-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs886038210 Pathogenic 49,881,330(+) GCCTC(-/AAGTA)AAGAG upstream-variant-2KB, reference, frameshift-variant
rs879255359 Uncertain significance 49,880,468(+) AACCA(A/C)ACCAG upstream-variant-2KB, reference, missense
rs1003740663 -- 49,877,101(+) TCCAC(A/G)TAAGG nc-transcript-variant
rs1003791734 -- 49,877,662(+) ACCTC(A/G)GTTGT nc-transcript-variant
rs1007627199 -- 49,876,451(+) GCCTT(A/G)TAATC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for USP27X-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv6902 CNV insertion 18451855

Relevant External Links for USP27X-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP27X-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP27X-AS1 Gene

Disorders for USP27X-AS1 Gene

Relevant External Links for USP27X-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP27X-AS1

No disorders were found for USP27X-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP27X-AS1 Gene

Publications for USP27X-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for USP27X-AS1 Gene

Sources for USP27X-AS1 Gene

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