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Aliases for USP27X-AS1 Gene

Subcategory (RNA class) for USP27X-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for USP27X-AS1 Gene

  • USP27X Antisense RNA 1 (Head To Head) 2 3

External Ids for USP27X-AS1 Gene

ORGUL Members for USP27X-AS1 Gene

Previous GeneCards Identifiers for USP27X-AS1 Gene

  • GC0XM049643

Summaries for USP27X-AS1 Gene

GeneCards Summary for USP27X-AS1 Gene

USP27X-AS1 (USP27X Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP27X-AS1 Gene

Genomics for USP27X-AS1 Gene

Genomic Location for USP27X-AS1 Gene

Start:
49,876,724 bp from pter
End:
49,879,356 bp from pter
Size:
2,633 bases
Orientation:
Minus strand

Genomic View for USP27X-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for USP27X-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP27X-AS1 Gene

No data available for Regulatory Elements for USP27X-AS1 Gene

Proteins for USP27X-AS1 Gene

Post-translational modifications for USP27X-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP27X-AS1 Gene

Domains for USP27X-AS1 Gene

Gene Families for USP27X-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with USP27X-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Function for USP27X-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for USP27X-AS1 Gene

Localization for USP27X-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP27X-AS1 Gene

Pathways for USP27X-AS1 Gene

SuperPathways for USP27X-AS1 Gene

No Data Available

Interacting Proteins for USP27X-AS1 Gene

Gene Ontology (GO) - Biological Process for USP27X-AS1 Gene

None

No data available for Pathways by source for USP27X-AS1 Gene

Transcripts for USP27X-AS1 Gene

mRNA/cDNA for USP27X-AS1 Gene

(13) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP27X-AS1 Gene

No ASD Table

Relevant External Links for USP27X-AS1 Gene

GeneLoc Exon Structure for
USP27X-AS1
ECgene alternative splicing isoforms for
USP27X-AS1

Expression for USP27X-AS1 Gene

mRNA expression in normal human tissues for USP27X-AS1 Gene

genes like me logo Genes that share expressions with USP27X-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for USP27X-AS1 Gene

Orthologs for USP27X-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for USP27X-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm14379 16
Species with no ortholog for USP27X-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for USP27X-AS1 Gene

ENSEMBL:
Gene Tree for USP27X-AS1 (if available)
TreeFam:
Gene Tree for USP27X-AS1 (if available)

Paralogs for USP27X-AS1 Gene

No data available for Paralogs for USP27X-AS1 Gene

Variants for USP27X-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP27X-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs6610109 -- 49,876,714(+) gtttc(A/T)ccgga downstream-variant-500B
rs34758655 -- 49,877,413(+) GGCCC(-/C)TCGGT nc-transcript-variant
rs138091275 -- 49,877,680(+) AGCAG(C/T)AGCAG nc-transcript-variant
rs180850724 -- 49,876,567(+) TTATT(A/G)AGACA downstream-variant-500B
rs181342985 -- 49,877,007(+) GAGCT(C/G)TCTCT nc-transcript-variant

Relevant External Links for USP27X-AS1 Gene

HapMap Linkage Disequilibrium report
USP27X-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for USP27X-AS1 Gene

Disorders for USP27X-AS1 Gene

No disorders were found for USP27X-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Publications for USP27X-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for USP27X-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate USP27X-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for USP27X-AS1
    • Block miRNA regulation of USP27X-AS1 using miScript Target Protectors

    Sources for USP27X-AS1 Gene

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