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Aliases for USP27X-AS1 Gene

Subcategory (RNA class) for USP27X-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for USP27X-AS1 Gene

  • USP27X Antisense RNA 1 (Head To Head) 2 3

External Ids for USP27X-AS1 Gene

ORGUL Members for USP27X-AS1 Gene

Previous GeneCards Identifiers for USP27X-AS1 Gene

  • GC0XM049643

Summaries for USP27X-AS1 Gene

GeneCards Summary for USP27X-AS1 Gene

USP27X-AS1 (USP27X Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP27X-AS1 Gene

Genomics for USP27X-AS1 Gene

Genomic Location for USP27X-AS1 Gene

Start:
49,876,724 bp from pter
End:
49,879,356 bp from pter
Size:
2,633 bases
Orientation:
Minus strand

Genomic View for USP27X-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for USP27X-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP27X-AS1 Gene

No data available for Regulatory Elements for USP27X-AS1 Gene

Proteins for USP27X-AS1 Gene

Post-translational modifications for USP27X-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP27X-AS1 Gene

Domains for USP27X-AS1 Gene

Gene Families for USP27X-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with USP27X-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP27X-AS1 Gene

Function for USP27X-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for USP27X-AS1 Gene

Localization for USP27X-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP27X-AS1 Gene

Pathways for USP27X-AS1 Gene

SuperPathways for USP27X-AS1 Gene

No Data Available

Interacting Proteins for USP27X-AS1 Gene

Gene Ontology (GO) - Biological Process for USP27X-AS1 Gene

None

No data available for Pathways by source for USP27X-AS1 Gene

Transcripts for USP27X-AS1 Gene

mRNA/cDNA for USP27X-AS1 Gene

(13) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate USP27X-AS1
    • Block miRNA regulation of USP27X-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for USP27X-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for USP27X-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for USP27X-AS1 Gene

    No ASD Table

    Relevant External Links for USP27X-AS1 Gene

    GeneLoc Exon Structure for
    USP27X-AS1
    ECgene alternative splicing isoforms for
    USP27X-AS1

    Expression for USP27X-AS1 Gene

    mRNA expression in normal human tissues for USP27X-AS1 Gene

    genes like me logo Genes that share expressions with USP27X-AS1: view

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for USP27X-AS1 Gene

    Orthologs for USP27X-AS1 Gene

    This gene was present in the common ancestor of human and mouse.

    Orthologs for USP27X-AS1 Gene

    Organism Taxonomy Gene Similarity Type Details
    mouse
    (Mus musculus)
    Mammalia Gm14379 16
    Species with no ortholog for USP27X-AS1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • chimpanzee (Pan troglodytes)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for USP27X-AS1 Gene

    ENSEMBL:
    Gene Tree for USP27X-AS1 (if available)
    TreeFam:
    Gene Tree for USP27X-AS1 (if available)

    Paralogs for USP27X-AS1 Gene

    No data available for Paralogs for USP27X-AS1 Gene

    Variants for USP27X-AS1 Gene

    Sequence variations from dbSNP and Humsavar for USP27X-AS1 Gene

    SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
    rs6610109 -- 49,876,714(+) gtttc(A/T)ccgga downstream-variant-500B
    rs34758655 -- 49,877,413(+) GGCCC(-/C)TCGGT nc-transcript-variant
    rs138091275 -- 49,877,680(+) AGCAG(C/T)AGCAG nc-transcript-variant
    rs180850724 -- 49,876,567(+) TTATT(A/G)AGACA downstream-variant-500B
    rs181342985 -- 49,877,007(+) GAGCT(C/G)TCTCT nc-transcript-variant

    Relevant External Links for USP27X-AS1 Gene

    HapMap Linkage Disequilibrium report
    USP27X-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for USP27X-AS1 Gene

    Disorders for USP27X-AS1 Gene

    No disorders were found for USP27X-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for USP27X-AS1 Gene

    Publications for USP27X-AS1 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for USP27X-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate USP27X-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for USP27X-AS1
      • Block miRNA regulation of USP27X-AS1 using miScript Target Protectors

      Sources for USP27X-AS1 Gene

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