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Aliases for USP2-AS1 Gene

Subcategory (RNA class) for USP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP2-AS1 Gene

  • USP2 Antisense RNA 1 (Head To Head) 2 3 5
  • THY1-AS1 3

External Ids for USP2-AS1 Gene

Previous GeneCards Identifiers for USP2-AS1 Gene

  • GC11P119255
  • GC11P119277

Summaries for USP2-AS1 Gene

GeneCards Summary for USP2-AS1 Gene

USP2-AS1 (USP2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP2-AS1 Gene

Genomics for USP2-AS1 Gene

Regulatory Elements for USP2-AS1 Gene

Enhancers for USP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F119356 1.1 Ensembl ENCODE 12.2 -24.9 -24870 1.4 HDGF ATF1 CBX3 CREB3L1 RAD21 ZNF143 CREM ZBTB2 REST TFDP1 USP2 USP2-AS1 THY1 NLRX1 C1QTNF5 MFRP GC11M119369
GH11F119352 1.1 Ensembl ENCODE 12.2 -28.7 -28711 1.2 PKNOX1 ARID4B RARA SCRT2 THAP11 SP5 MXD4 KAT8 ZNF585B RFX3 USP2 IFT46 RPL5P30 USP2-AS1 ENSG00000255121 THY1 NLRX1 C1QTNF5 MFRP GC11M119369
GH11F119469 1.1 FANTOM5 Ensembl ENCODE 12.1 +89.0 88987 2.0 JUND GABPB1 SIN3A ZBTB33 FOS ZFX ZBTB17 NR2F2 THY1 USP2 USP2-AS1 ENSG00000254740 C1QTNF5 MFRP LOC105369520 GC11P119452 GC11P119503
GH11F119459 0.8 Ensembl ENCODE 12.1 +79.0 78955 2.9 GATAD2A ZNF366 ZNF512 ZKSCAN8 HNF4G THY1 USP2 USP2-AS1 ENSG00000254740 C1QTNF5 MFRP GC11P119452 GC11P119503
GH11F119423 0.6 ENCODE 11.9 +43.0 42998 1.8 CTCF TBP ZNF654 POLR3A SMAD5 POLR2A CEBPB RAD21 THY1 USP2 USP2-AS1 ENSG00000254740 HINFP C1QTNF5 MFRP ENSG00000263873
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for USP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000112364 -78 1401 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for USP2-AS1 Gene

Chromosome:
11
Start:
119,381,778 bp from pter
End:
119,526,664 bp from pter
Size:
144,887 bases
Orientation:
Plus strand

Genomic View for USP2-AS1 Gene

Genes around USP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP2-AS1 Gene

Proteins for USP2-AS1 Gene

Post-translational modifications for USP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP2-AS1 Gene

Domains & Families for USP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP2-AS1 Gene

Function for USP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP2-AS1 Gene

Localization for USP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP2-AS1 Gene

Pathways & Interactions for USP2-AS1 Gene

SuperPathways for USP2-AS1 Gene

No Data Available

Interacting Proteins for USP2-AS1 Gene

Gene Ontology (GO) - Biological Process for USP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP2-AS1 Gene

Transcripts for USP2-AS1 Gene

mRNA/cDNA for USP2-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP2-AS1 Gene

No ASD Table

Relevant External Links for USP2-AS1 Gene

GeneLoc Exon Structure for
USP2-AS1
ECgene alternative splicing isoforms for
USP2-AS1

Expression for USP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP2-AS1 Gene

This gene is overexpressed in Testis (x15.7).
genes like me logo Genes that share expression patterns with USP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for USP2-AS1 Gene

Orthologs for USP2-AS1 Gene

Evolution for USP2-AS1 Gene

ENSEMBL:
Gene Tree for USP2-AS1 (if available)
TreeFam:
Gene Tree for USP2-AS1 (if available)

No data available for Orthologs for USP2-AS1 Gene

Paralogs for USP2-AS1 Gene

No data available for Paralogs for USP2-AS1 Gene

Variants for USP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP2-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1001205 -- 119,422,002(-) GCTAG(A/G)CTACC intron-variant, utr-variant-5-prime
rs1002179 -- 119,473,696(+) GCAGG(C/T)GGATG intron-variant
rs1014800 -- 119,482,247(-) CCCCT(G/T)GGGTC intron-variant
rs10431084 -- 119,431,281(+) GTGGG(A/G)CAGAT intron-variant
rs10437687 -- 119,445,602(+) TGTGC(A/G)TGACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for USP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832284 CNV gain 17160897
nsv515 CNV deletion 18451855
nsv38588 CNV deletion 16902084
nsv1119920 CNV deletion 24896259
nsv1054222 CNV gain 25217958
esv3627891 CNV loss 21293372
esv2668507 CNV deletion 23128226
esv2153928 CNV deletion 18987734

Relevant External Links for USP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP2-AS1 Gene

Disorders for USP2-AS1 Gene

Relevant External Links for USP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP2-AS1

No disorders were found for USP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP2-AS1 Gene

Publications for USP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for USP2-AS1 Gene

Sources for USP2-AS1 Gene

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