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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

USP13 Gene

protein-coding   GIFtS: 56
GCID: GC03P179370

ubiquitin specific peptidase 13 (isopeptidase T-3)

(Previous name: ubiquitin specific protease 13 (isopeptidase T-3) )
 Explore 1 disease affiliated with
USP13 via our new
 Human Malady Compendium 
Biological research products
for USP13
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ubiquitin Specific Peptidase 13 (Isopeptidase T-3)1 2     Ubiquitin-Specific-Processing Protease 132 3
ISOT32 3 5     Ubiquitin Carboxyl-Terminal Hydrolase 132
IsoT-31 2     Ubiquitin Thiolesterase 132
Ubiquitin Specific Protease 13 (Isopeptidase T-3)1 2     EC 3.4.19.123
Deubiquitinating Enzyme 132 3     ISOT-33
Isopeptidase T-32 3     EC 3.1.2.158
Ubiquitin Thioesterase 132 3     

External Ids:    HGNC: 126111   Entrez Gene: 89752   Ensembl: ENSG000000580567   OMIM: 6035915   UniProtKB: Q929953   

Export aliases for USP13 gene to outside databases

Previous GC identifers: GC03P176137 GC03P180213 GC03P180772 GC03P180691 GC03P180853 GC03P176774


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UBP13_HUMAN, Q92995
Function: Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is
involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of
a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of
autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential
regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the
existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10
and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic
reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity:
binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro
and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate
unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to
confirm such data

Gene Wiki entry for USP13


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_005612.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the USP13 gene promoter:
         Bach1   Brachyury   POU6F1 (c2)   Nkx2-5   Cdc5   LCR-F1   Evi-1   Pax-3   Zic1   SEF-1 (1)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUSP13 promoter sequence
   Search SABiosciences Chromatin IP Primers for USP13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat USP13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q26.2-q26.3   Ensembl cytogenetic band:  3q26.33   HGNC cytogenetic band: 3q26.2-q26.3

USP13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
USP13 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P179370:  view genomic region     (about GC identifiers)

Start:
179,370,543 bp from pter      End:
179,507,189 bp from pter
Size:
136,647 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UBP13_HUMAN, Q92995 (See protein sequence)
Recommended Name: Ubiquitin carboxyl-terminal hydrolase 13  
Size: 863 amino acids; 97327 Da
Subunit: Interacts with UFD1. Interacts (via UBA domains) with SIAH2 (when ubiquitinated)
2 PDB 3D structures from and Proteopedia for USP13:
2L80 (3D)        2LBC (3D)    
Secondary accessions: A8K2S3 B4DYF3 D3DNS2 Q96B25
Alternative splicing: 2 isoforms:  Q92995-1   Q92995-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for USP13: NX_Q92995

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q92995

  • 4/9 DME Specific Peptides for USP13 (Q92995) (see all 9)
     VKLGTIT  ACRKAVY  NLGNSCY  KEGRWVI 

    USP13 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_003931.2  
    ENSEMBL proteins: 
     ENSP00000263966   ENSP00000418651   ENSP00000417146   ENSP00000420057  

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    Novus Biologicals USP13 Protein
    Novus Biologicals USP13 Lysates
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    Uscn Proteins for USP13


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    Uscn ELISAs and CLIAs for USP13


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    USP13 for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR000449 UBA/transl_elong_EF1B_N
     IPR001394 Peptidase_C19
     IPR016652 Ubiquitinyl_hydrolase
     IPR001607 Znf_UBP
     IPR015940 UBA/transl_elong_EF1B_N_euk

    Graphical View of Domain Structure for InterPro Entry Q92995

    ProtoNet protein and cluster: Q92995

    3 Blocks protein families:
    IPB000449 Ubiquitin-associated domain
    IPB001394 Ubiquitin thiolesterase
    IPB001607 Zn-finger in ubiquitin thiolesterase


    UniProtKB/Swiss-Prot: UBP13_HUMAN, Q92995
    Domain: The UBP-type zinc finger has lost its ability to bind ubiquitin and USP13 is not activated by unanchored
    ubiquitin. Swapping with the UBP-type zinc finger from USP5 restores ability to bind unanchored ubiquitin and
    subsequent activation of the protein (PubMed:22216260)
    Domain: The UBA domains mediate binding to ubiquitin (PubMed:22216260)
    Similarity: Belongs to the peptidase C19 family
    Similarity: Contains 2 UBA domains
    Similarity: Contains 1 UBP-type zinc finger


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: UBP13_HUMAN, Q92995
    Function: Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is
    involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of
    a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of
    autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential
    regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the
    existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10
    and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic
    reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity:
    binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro
    and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate
    unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to
    confirm such data
    Catalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the
    C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)
    Enzyme regulation: Specifically inhibited by spautin-1 (specific and potent autophagy inhibitor-1), a derivative of
    MBCQ that binds to USP13 and inhibits deubiquitinase activity. Regulated by PIK3C3/VPS34-containing complexes. The
    weak deubiquitinase activity in vitro suggests the existence of some mechanism that activates the enzyme

         Genatlas biochemistry entry for USP13:
    ubiquitin specific protease 13,expressed in testis and ovary,ubiquitin C terminal hydrolase family member,deubiquitin
    enzyme family

    Enzyme Numbers (IUBMB): EC 3.1.2.152 EC 3.4.19.121

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat USP13
    8/82 QIAGEN miScript miRNA Assays for microRNAs that regulate USP13 (see all 82):
    hsa-miR-106a hsa-miR-134 hsa-miR-138-2* hsa-miR-342-3p hsa-miR-3142 hsa-miR-93 hsa-miR-155* hsa-miR-130b
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for USP13 (see all 7)
    OriGene shRNA RFP: USP13
    OriGene siRNA: USP13
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat USP13

    Gene Editing
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    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP13

    Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004197cysteine-type endopeptidase activity IMP--
    GO:0004221ubiquitin thiolesterase activity IDA--
    GO:0004843ubiquitin-specific protease activity IDA--
    GO:0005515protein binding IPI--
    GO:0008242omega peptidase activity IEA--


    USP13 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Ubiquitin-Proteasome Dependent Proteolysis
    Ubiquitin-Proteasome Dependent Proteolysis1.00

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for USP13
        Ubiquitin-Proteasome Dependent Proteolysis


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for USP13

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/45 Interacting proteins for USP13 (Q929952, 3 ENSP000002639664) via UniProtKB, MINT, STRING, and/or I2D (see all 45)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DVL1O146402, 3MINT-65081 I2D: score=5 
    FNBP1LQ5T0N52, 3MINT-65085 I2D: score=5 
    FUNDC2Q9BWH22, 3MINT-65084 I2D: score=5 
    MRPL20Q9BYC92, 3MINT-65083 I2D: score=5 
    LAPTM5Q135712, 3MINT-62177 I2D: score=3 
    About this table

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355regulation of transcription, DNA-dependent IMP--
    GO:0006511ubiquitin-dependent protein catabolic process IEA--
    GO:0006914autophagy IEA--
    GO:0008283cell proliferation IMP--
    GO:0010506regulation of autophagy IDA--


    USP13 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for USP13

    1 HMDB Compound for USP13    About this table
    CompoundSynonyms CAS #PubMed Ids
    WaterDihydrogen oxide (see all 2)7732-18-5--
    Search CenterWatch for drugs/clinical trials and news about USP13 / UBP13 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for USP13 gene: 
    NM_003940.2  

    Unigene Cluster for USP13:

    Ubiquitin specific peptidase 13 (isopeptidase T-3)
    Hs.175322  [show with all ESTs]
    Unigene Representative Sequence: NM_003940
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000263966(uc003fkh.3) ENST00000482333 ENST00000497380 ENST00000496897
    ENST00000497155

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat USP13
    8/82 QIAGEN miScript miRNA Assays for microRNAs that regulate USP13 (see all 82):
    hsa-miR-106a hsa-miR-134 hsa-miR-138-2* hsa-miR-342-3p hsa-miR-3142 hsa-miR-93 hsa-miR-155* hsa-miR-130b
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for USP13 (see all 7)
    OriGene shRNA RFP: USP13
    OriGene siRNA: USP13
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat USP13
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat USP13
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat USP13

    Additional cDNA sequence: 

    AK091484.1 AK290338.1 AK302404.1 BC016146.1 BC049199.1 BC062766.1 U75362.1 

    8 DOTS entries:

    DT.212478  DT.312419  DT.100008025  DT.100714935  DT.100780389  DT.100806935  DT.100676001  DT.95186063 

    24/164 AceView cDNA sequences (see all 164):

    AA644364 R07668 BU164934 BU619563 BE892755 AA993458 AA629108 BX102558 
    BU683248 AA932764 AA506150 AW304039 BQ775545 AI804164 F29207 BM974597 
    AL596734 BQ009180 AI125572 CR591494 BQ222207 AI872417 BM803817 CR623689 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    USP13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTGTGGGGTA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See USP13 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for USP13

    SOURCE GeneReport for Unigene cluster: Hs.175322

    UniProtKB/Swiss-Prot: UBP13_HUMAN, Q92995
    Tissue specificity: Highly expressed in ovary and testes

        SABiosciences Custom PCR Arrays for USP13
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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USP13

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for USP13 gene from 8/27 species (see all 27)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves USP131 ubiquitin specific peptidase 13 (isopeptidase T-3) 78.22(n)
    84.01(a)
      429286  XM_426842.3  XP_426842.2 
    lizard
    (Anolis carolinensis)
    Reptilia USP136
    --
    85(a)
    1 ↔ 1
    3(2001427-2088232)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.161882 Xenopus laevis transcribed sequence with moderate similarity more 76.24(n)    BJ048181.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wu:fc61g081 wu:fc61g08 72.32(n)
    76.39(a)
      558011  NM_001098386.1  NP_001091856.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG120823 protein deubiquitination ubiquitin
    isopeptidase more
    43(a)   63B6   --
    worm
    (Caenorhabditis elegans)
    Secernentea T27A3.23 ubiquitin carboxyl-terminal hydrolase 31(a)   I(6118275-6122458)   --
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons PER16
    ubiquitin carboxyl-terminal hydrolase 14
    43(a)
    1 → many
    3(7202773-7208402)
    rice
    (Oryza sativa)
    Liliopsida --
    ubiquitin carboxyl-terminal hydrolase 14, putative...
    43(a)
    1 → many
    1(3985612-3994398)


    ENSEMBL Gene Tree for USP13 (if available)
    TreeFam Gene Tree for USP13 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for USP13 gene
    USP52  
    1 SIMAP similar gene for USP13 using alignment to 3 protein entries:     UBP13_HUMAN (see all proteins):
    USP5

    USP13 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for USP13
    PGOHUM00000239780


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2423 NCBI SNPs in USP13 are shown (see all 2423    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1407752081,2
    C,unknown179449656(+) TGTCTA/C/GAAGTG 1 -- int10--------
    rs1507068931,2
    --179368948(+) TTACTA/GCAAGT 1 -- us2k10--------
    rs1379142311,2
    --179368952(+) TACAAA/GTACAA 1 -- us2k10--------
    rs1432799171,2
    --179368978(+) GCCCAC/TGGTAT 1 -- us2k10--------
    rs777991561,2
    C,--179368997(+) TGCCAA/GAATGC 1 -- us2k14Minor allele frequency- G:0.09NA WA EA 360
    rs98268931,2
    C,H,--179369119(+) AGAGCC/AACTTC 1 -- us2k18Minor allele frequency- A:0.36EA NS NA WA 642
    rs1400598301,2
    --179369170(+) AAGGAA/TCTTTA 1 -- us2k10--------
    rs1913337251,2
    --179369404(+) TCAATA/GTATCT 1 -- us2k10--------
    rs777171331,2
    C,F,--179369407(+) ATATAT/CCTTTA 1 -- us2k11Minor allele frequency- C:0.03EA 120
    rs748483041,2
    --179369467(+) ATCTAA/TGATTA 1 -- us2k11Minor allele frequency- T:0.01EA 120

    HapMap Linkage Disequilibrium report for USP13 (179370543 - 179507189 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for USP13: --

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    USP13 for disorders           About GeneDecksing

    OMIM gene information: 603591    OMIM disorders: --

    1 disease for USP13:    About MalaCards
    malaria

    Human Genome Epidemiology (HuGE) Navigator: USP13 (1 document)

    Export disorders for USP13 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for USP13 gene, integrated from 9 sources (see all 37):
    (articles sorted by number of sources associating them with USP13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The genomic organization of Isopeptidase T-3 (ISOT-3), a new member of the ubiquitin specific protease family (UBP). (PubMed id 9841226)1, 2, 9 Timms K.M.... Gibbs R.A. (1998)
    2. Regulation of MITF stability by the USP13 deubiquitin ase. (PubMed id 21811243)1, 2 Zhao X....Fisher D.E. (2011)
    3. Ubiquitin-recognition protein Ufd1 couples the endopl asmic reticulum (ER) stress response to cell cycle control. (PubMed id 21571647)1, 2 Chen M....Ronai Z.A. (2011)
    4. USP13 enzyme regulates Siah2 ligase stability and act ivity via noncatalytic ubiquitin-binding domains. (PubMed id 21659512)1, 2 Scortegagna M....Ronai Z.A. (2011)
    5. Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13. (PubMed id 21962518)1, 2 Liu J....Yuan J. (2011)
    6. Domain analysis reveals that a deubiquitinating enzym e USP13 performs non-activating catalysis for Lys63-linked polyubiquitin. (PubMed id 22216260)1, 2 Zhang Y.H....Hu H.Y. (2011)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    8. Human and mouse proteases: a comparative genomic approach. (PubMed id 12838346)1, 3 Puente X.S.... Lopez-Otin C. (2003)
    9. Muscle-specific RING finger-1 interacts with titin to regulate sarcomeric M-line and thick filament structure and may have nuclear functions via its interaction with glucocorticoid modulatory element binding protein-1. (PubMed id 11927605)1, 9 McElhinny A.S.... Gregorio C.C. (2002)
    10. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 8975 HGNC: 12611 AceView: USP13 Ensembl:ENSG00000058056 euGenes: HUgn8975
    ECgene: USP13 H-InvDB: USP13

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for USP13 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for USP13 gene:
    Search GeneIP for patents involving USP13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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