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Aliases for USP12-AS2 Gene

Subcategory (RNA class) for USP12-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP12-AS2 Gene

  • USP12 Antisense RNA 2 (Head To Head) 2 3 5
  • USP12 Antisense RNA 2 (Non-Protein Coding) 2
  • USP12 Antisense RNA 2 2

External Ids for USP12-AS2 Gene

Previous GeneCards Identifiers for USP12-AS2 Gene

  • GC00U933669
  • GC13P027747

Summaries for USP12-AS2 Gene

GeneCards Summary for USP12-AS2 Gene

USP12-AS2 (USP12 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP12-AS2 Gene

Genomics for USP12-AS2 Gene

Regulatory Elements for USP12-AS2 Gene

Enhancers for USP12-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G027137 1 ENCODE 17.5 -34.0 -33974 1.8 PKNOX1 ATF1 TCF12 ZNF766 ELK1 GATA2 KLF13 CAVIN1 ZNF592 MEF2D USP12 USP12-AS2 RPL21 SNORA27 SNORD102 LINC00412 RASL11A USP12-AS1
GH13G027078 0.8 Ensembl ENCODE 11 -92.4 -92433 2.1 SOX13 PKNOX1 ARNT SCRT2 TEAD4 CEBPG SMAD4 USP12-AS1 USP12 USP12-AS2 RPL21 SNORA27 SNORD102 LINC00412 RBBP8P2
GH13G027130 1.5 FANTOM5 Ensembl ENCODE 5.8 -40.6 -40632 3.3 FEZF1 YY1 CBX5 ZNF143 FOS JUNB TBX21 NBN STAT3 HNF4A RASL11A USP12 USP12-AS2 USP12-AS1
GH13G027135 0.6 Ensembl 11.5 -37.3 -37259 0.4 OSR2 BCL6B ZNF394 BCL6 ZNF843 YY1 USP12 USP12-AS2 RPL21 SNORA27 SNORD102 LINC00412 USP12-AS1
GH13G027134 0.4 Ensembl 11.5 -38.1 -38059 0.4 HNF4A USP12 USP12-AS2 RPL21 SNORA27 SNORD102 LINC00412 USP12-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USP12-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for USP12-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000060303 -759 2601 ATF1 ARNT ARID4B SIN3A FEZF1 ZNF48 YY1 TCF12 GLIS2 GATA2

Genomic Location for USP12-AS2 Gene

Chromosome:
13
Start:
27,172,259 bp from pter
End:
27,183,503 bp from pter
Size:
11,245 bases
Orientation:
Plus strand

Genomic View for USP12-AS2 Gene

Genes around USP12-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP12-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP12-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP12-AS2 Gene

Proteins for USP12-AS2 Gene

Post-translational modifications for USP12-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP12-AS2 Gene

Domains & Families for USP12-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP12-AS2 Gene

Function for USP12-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP12-AS2 Gene

Localization for USP12-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP12-AS2 Gene

Pathways & Interactions for USP12-AS2 Gene

SuperPathways for USP12-AS2 Gene

No Data Available

Interacting Proteins for USP12-AS2 Gene

Gene Ontology (GO) - Biological Process for USP12-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP12-AS2 Gene

Drugs & Compounds for USP12-AS2 Gene

No Compound Related Data Available

Transcripts for USP12-AS2 Gene

mRNA/cDNA for USP12-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for USP12-AS2 Gene

No ASD Table

Relevant External Links for USP12-AS2 Gene

GeneLoc Exon Structure for
USP12-AS2
ECgene alternative splicing isoforms for
USP12-AS2

Expression for USP12-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP12-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for USP12-AS2 Gene

This gene is overexpressed in Testis (x7.1) and Brain - Nucleus accumbens (basal ganglia) (x5.5).
genes like me logo Genes that share expression patterns with USP12-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP12-AS2 Gene

Orthologs for USP12-AS2 Gene

Evolution for USP12-AS2 Gene

ENSEMBL:
Gene Tree for USP12-AS2 (if available)
TreeFam:
Gene Tree for USP12-AS2 (if available)

No data available for Orthologs for USP12-AS2 Gene

Paralogs for USP12-AS2 Gene

No data available for Paralogs for USP12-AS2 Gene

Variants for USP12-AS2 Gene

Sequence variations from dbSNP and Humsavar for USP12-AS2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000402333 -- 27,174,189(+) CGCCT(G/T)TTGTA intron-variant
rs1000421107 -- 27,172,452(+) AAAAA(A/G)ACAAA intron-variant, upstream-variant-2KB
rs1001304685 -- 27,174,901(+) GGGAC(A/C)AGGCA intron-variant
rs1001364335 -- 27,171,511(+) AGCGG(C/T)CACTG intron-variant, upstream-variant-2KB
rs1001479766 -- 27,171,747(+) GCCGC(C/T)GCGGA upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for USP12-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2583727 CNV deletion 19546169

Relevant External Links for USP12-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP12-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP12-AS2 Gene

Disorders for USP12-AS2 Gene

Relevant External Links for USP12-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP12-AS2

No disorders were found for USP12-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP12-AS2 Gene

Publications for USP12-AS2 Gene

No publications were found for USP12-AS2 Gene.

Products for USP12-AS2 Gene

Sources for USP12-AS2 Gene

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