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Aliases for USP12-AS1 Gene

Subcategory (RNA class) for USP12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP12-AS1 Gene

  • USP12 Antisense RNA 1 2 3 5
  • USP12 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for USP12-AS1 Gene

Previous GeneCards Identifiers for USP12-AS1 Gene

  • GC00U933128
  • GC13P027737

Summaries for USP12-AS1 Gene

GeneCards Summary for USP12-AS1 Gene

USP12-AS1 (USP12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP12-AS1 Gene

Genomics for USP12-AS1 Gene

Regulatory Elements for USP12-AS1 Gene

Enhancers for USP12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F027078 1.2 Ensembl ENCODE 11 -45.7 -45707 2.1 SOX13 PKNOX1 ARNT SCRT2 TEAD4 SMAD4 CEBPG USP12-AS1 USP12 USP12-AS2 SNORA27 SNORD102 RPL21 LINC00412 RBBP8P2
GH13F027044 0.9 Ensembl ENCODE 10.3 -80.0 -80033 2.6 ATF1 PKNOX1 ZFP64 ARID4B SIN3A GLI4 FEZF1 DMAP1 ZNF2 ZNF48 WASF3-AS1 THAP12P6 ATP8A2P3 ENSG00000271559 RASL11A USP12-AS1 GC13P027043 LOC105370124
GH13F027012 0.9 Ensembl ENCODE 10 -112.6 -112552 0.8 ZNF146 BHLHE40 CEBPB MAX USF2 EP300 JUND PRDM10 FOS MYC RASL11A LINC00412 USP12-AS1 GC13M027019 ENSG00000283579
GH13F027017 0.2 ENCODE 10 -108.5 -108465 0.1 SOX13 MNT RASL11A LINC00412 USP12-AS1 GC13M027019 ENSG00000283579
GH13F027242 0.2 ENCODE 9.5 +117.4 117376 0.2 SMARCE1 ATF1 RNF2 MTA2 TBL1XR1 TAL1 DPF2 ARID1B GATA3 CTBP1 RASL11A USP12-AS1 LINC00412 LOC105370125
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around USP12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for USP12-AS1 Gene

Chromosome:
13
Start:
27,125,533 bp from pter
End:
27,169,135 bp from pter
Size:
43,603 bases
Orientation:
Plus strand

Genomic View for USP12-AS1 Gene

Genes around USP12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP12-AS1 Gene

Proteins for USP12-AS1 Gene

Post-translational modifications for USP12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP12-AS1 Gene

Domains & Families for USP12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP12-AS1 Gene

Function for USP12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP12-AS1 Gene

Localization for USP12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for USP12-AS1 Gene

Pathways & Interactions for USP12-AS1 Gene

SuperPathways for USP12-AS1 Gene

No Data Available

Interacting Proteins for USP12-AS1 Gene

Gene Ontology (GO) - Biological Process for USP12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP12-AS1 Gene

Transcripts for USP12-AS1 Gene

mRNA/cDNA for USP12-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for USP12-AS1 Gene

No ASD Table

Relevant External Links for USP12-AS1 Gene

GeneLoc Exon Structure for
USP12-AS1
ECgene alternative splicing isoforms for
USP12-AS1

Expression for USP12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP12-AS1 Gene

genes like me logo Genes that share expression patterns with USP12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for USP12-AS1 Gene

Orthologs for USP12-AS1 Gene

Evolution for USP12-AS1 Gene

ENSEMBL:
Gene Tree for USP12-AS1 (if available)
TreeFam:
Gene Tree for USP12-AS1 (if available)

No data available for Orthologs for USP12-AS1 Gene

Paralogs for USP12-AS1 Gene

No data available for Paralogs for USP12-AS1 Gene

Variants for USP12-AS1 Gene

Sequence variations from dbSNP and Humsavar for USP12-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10220079 -- 27,161,607(+) ggcca(G/T)gtgca intron-variant
rs10507377 -- 27,164,956(+) ATAAT(A/C)ATATG intron-variant
rs10569845 -- 27,154,072(+) TCCAC(-/AT)CTTTC intron-variant
rs10578545 -- 27,154,331(+) ACCTC(-/TC)ATGCT intron-variant
rs111308223 -- 27,136,039(+) TTTTC(G/T)GTCAC intron-variant

Relevant External Links for USP12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for USP12-AS1 Gene

Disorders for USP12-AS1 Gene

Relevant External Links for USP12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
USP12-AS1

No disorders were found for USP12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP12-AS1 Gene

Publications for USP12-AS1 Gene

No publications were found for USP12-AS1 Gene.

Products for USP12-AS1 Gene

Sources for USP12-AS1 Gene

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