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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

USMG5 Gene

protein-coding   GIFtS: 46
GCID: GC10M105138

Up-Regulated During Skeletal Muscle Growth 5 Homolog (Mouse)

(Previous names: upregulated during skeletal muscle growth 5, upregulated...)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Up-Regulated During Skeletal Muscle Growth 5 Homolog (Mouse)1 2     Upregulated During Skeletal Muscle Growth 51
Diabetes-Associated Protein In Insulin-Sensitive Tissues2 3     Upregulated During Skeletal Muscle Growth 5 Homolog (Mouse)1
DAPIT2 3     bA792D24.42
HCVFTP22 3     Up-Regulated During Skeletal Muscle Growth Protein 52
HCV F-Transactivated Protein 22 3     Upregulated During Skeletal Muscle Growth 5 Homolog2

External Ids:    HGNC: 308891   Entrez Gene: 848332   Ensembl: ENSG000001739157   OMIM: 6152045   UniProtKB: Q96IX53   

Export aliases for USMG5 gene to outside databases

Previous GC identifers: GC10M104814 GC10M098779


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for USMG5 Gene: 
USMG5 (up-regulated during skeletal muscle growth 5 homolog (mouse)) is a protein-coding gene. Diseases associated with USMG5 include hepatitis b, and hepatitis.

UniProtKB/Swiss-Prot: USMG5_HUMAN, Q96IX5
Function: Plays a critical role in maintaining the ATP synthase population in mitochondria




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.2  NT_030059.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the USMG5 gene promoter:
         RFX1   RP58   AML1a   FOXO3   POU3F2   Evi-1   FOXO3b   SRY   FOXO3a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUSMG5 promoter sequence
   Search SABiosciences Chromatin IP Primers for USMG5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat USMG5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q24.33   Ensembl cytogenetic band:  10q24.33   HGNC cytogenetic band: 10q24.33

USMG5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
USMG5 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M105138:  view genomic region     (about GC identifiers)

Start:
105,148,798 bp from pter      End:
105,156,270 bp from pter
Size:
7,473 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: USMG5_HUMAN, Q96IX5 (See protein sequence)
Recommended Name: Up-regulated during skeletal muscle growth protein 5  
Size: 58 amino acids; 6458 Da
Subunit: Component of an ATP synthase complex composed of ATP5F1, ATP5G1, ATP5E, ATP5H, ATP5I, ATP5J, ATP5J2,
MT-ATP6, MT-ATP8, ATP5A1, ATP5B, ATP5D, ATP5C1, ATP5O, ATP5L, USMG5 and MP68 (By similarity)
Subcellular location: Mitochondrion membrane; Single-pass membrane protein (By similarity)
Secondary accessions: B2R4N2 D3DR92

Explore the universe of human proteins at neXtProt for USMG5: NX_Q96IX5

Explore proteomics data for USMG5 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96IX5

  • USMG5 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    USMG5 Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001193355.1  NP_001193356.1  NP_116136.1  

    ENSEMBL proteins: 
     ENSP00000358840   ENSP00000358826   ENSP00000358830   ENSP00000311245   ENSP00000337705  

    Human Recombinant Protein Products for USMG5: 
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    Browse Sino Biological Cell Lysates 
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    Cloud-Clone Corp. Proteins for USMG5 

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005739mitochondrion ----
    GO:0005743mitochondrial inner membrane ----
    GO:0005753mitochondrial proton-transporting ATP synthase complex ISS--
    GO:0016021integral to membrane IEA--

    USMG5 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR009125 DAPIT

    Graphical View of Domain Structure for InterPro Entry Q96IX5

    ProtoNet protein and cluster: Q96IX5


    USMG5 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: USMG5_HUMAN, Q96IX5
    Function: Plays a critical role in maintaining the ATP synthase population in mitochondria
    Induction: Transactivated by SBP1

    Phenotypes:
         1 GenomeRNAi human phenotype for USMG5:

     Decreased influenza A/WSN/33 r 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for USMG5 
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USMG5


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for USMG5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/57 Interacting proteins for USMG5 (Q96IX52, 3 ENSP000003112454) via UniProtKB, MINT, STRING, and/or I2D (see all 57)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ADRM1Q161862, 3, ENSP000002530034MINT-3373655 I2D: score=1 STRING: ENSP00000253003
    UBQLN4Q9NRR52, 3, ENSP000003572924MINT-2877588 I2D: score=3 STRING: ENSP00000357292
    C20orf24Q9BUV83, ENSP000003412134I2D: score=1 STRING: ENSP00000341213
    SLX4Q8IY923, ENSP000002940084I2D: score=1 STRING: ENSP00000294008
    TSC22D1Q157143, ENSP000003974354I2D: score=1 STRING: ENSP00000397435
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for USMG5

    Search CenterWatch for drugs/clinical trials and news about USMG5

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for USMG5 gene (3 alternative transcripts): 
    NM_001206426.1  NM_001206427.1  NM_032747.3  

    Unigene Cluster for USMG5:

    Up-regulated during skeletal muscle growth 5 homolog (mouse)
    Hs.500921  [show with all ESTs]
    Unigene Representative Sequence: BE889962
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000369825 ENST00000369811 ENST00000369815(uc021pxl.1) ENST00000309579(uc001kwx.2)
    ENST00000337003(uc001kww.2)
    miRNA
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    hsa-miR-493* hsa-let-7g* hsa-let-7a-2* hsa-miR-1272
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat USMG5

    Additional mRNA sequence: 

    AJ272056.1 AK311888.1 AL110185.1 AY740522.1 BC007087.1 BC072683.1 BC091507.1 

    16 DOTS entries:

    DT.101985833  DT.121272568  DT.87046000  DT.100044262  DT.101986246  DT.100715445  DT.95274793  DT.121309801 
    DT.97760567  DT.121272511  DT.87045999  DT.121272503  DT.121272526  DT.92440774  DT.95238978  DT.95300736 

    24/233 AceView cDNA sequences (see all 233):

    CB107370 BC072683 BM786566 H87273 BM461842 F25953 AW358546 BM765916 
    BM661719 AI719475 AI207976 F37904 BE771230 CB108019 AI809245 BX109200 
    AA862808 W84725 BM842118 AJ272056 BQ011420 AA722455 AA749507 AJ712776 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for USMG5    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
    SP1:              -     -                           
    SP2:              -           -                     
    SP3:              -     -     -                     
    SP4:                          -                     


    ECgene alternative splicing isoforms for USMG5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    USMG5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGATAATTCA
    USMG5 Expression
    About this image


    See USMG5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for USMG5

    SOURCE GeneReport for Unigene cluster: Hs.500921
        SABiosciences Custom PCR Arrays for USMG5
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USMG5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for USMG5 gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Usmg51 , 5 upregulated during skeletal muscle growth 51, 5 90.8(n)1
    89.66(a)1
      19 (39.23 cM)5
    664771  NM_023211.41  NP_075700.21 
     470834715 
    chicken
    (Gallus gallus)
    Aves USMG56
    up-regulated during skeletal muscle growth protein...
    64(a)
    1 ↔ 1
    6(23144647-23148454)
    zebrafish
    (Danio rerio)
    Actinopterygii USMG56
    up-regulated during skeletal muscle growth 5 homol...
    64(a)
    1 ↔ 1
    1(49938536-49941291)


    ENSEMBL Gene Tree for USMG5 (if available)
    TreeFam Gene Tree for USMG5 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for USMG5 gene

    USMG5 for paralogs           About GeneDecksing


    3 Pseudogenes.org Pseudogenes for USMG5
    PGOHUM00000237159 PGOHUM00000243791 PGOHUM00000241853


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/76 SNPs in USMG5 are shown (see all 76)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1917325511,2
    --105149529(+) TATCCC/TCCAGG 3 -- int10--------
    rs70930391,2
    C--105149547(+) gtagcA/Ggcgca 3 -- int16Minor allele frequency- G:0.37NA CSA WA EA 363
    rs127705291,2
    C,F--105149645(+) caccaT/Cgcccg 3 -- int12Minor allele frequency- C:0.00NA 4
    rs1841417011,2
    --105149837(+) GGAGGG/TAATTA 3 -- int10--------
    rs1460621461,2
    --105149838(+) GAGGTA/TATTAA 3 -- int10--------
    rs1482484421,2
    --105149875(+) TGTTCA/GTCAGG 3 -- int10--------
    rs1412524841,2
    C--105149907(+) TTCTCA/GGATAT 3 -- int10--------
    rs1507571961,2
    --105149931(+) TCAACC/TGTTTT 3 -- int10--------
    rs1888431681,2
    --105149941(+) TGAGAC/TTGGAA 3 -- int10--------
    rs1821087351,2
    --105149954(+) GCTCTG/TAAGCA 3 -- int10--------

    HapMap Linkage Disequilibrium report for USMG5 (105148798 - 105156270 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for USMG5:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv7529CNV Insertion18451855

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 615204    OMIM disorders: --

    2 diseases for USMG5:    About MalaCards
    hepatitis b    hepatitis


    USMG5 for disorders           About GeneDecksing


    Export disorders for USMG5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for USMG5 gene, integrated from 9 sources (see all 15):
    (articles sorted by number of sources associating them with USMG5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Knockdown of DAPIT (diabetes-associated protein in in sulin-sensitive tissue) results in loss of ATP synthase in mitochondria. (PubMed id 21345788)1, 2 Ohsakaya S....Yoshida M. (2011)
    2. Study of transactivating effect of pre-S2 protein of hepatitis B virus and cloning of genes transactivated by pre-S2 protein with suppression subtractive hybridization. (PubMed id 16222733)1, 2 Ji D.... Guo J. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    6. Interlaboratory reproducibility of large-scale human p rotein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (2013)
    7. SGTA recognizes a noncanonical ubiquitin-like domain i n the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degra dation. (PubMed id 23246001)1 Xu Y....Ye Y. (2012)
    8. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    9. Cellular and tissue expression of DAPIT, a phylogeneti cally conserved peptide. (PubMed id 22688299)1 Kontro H....Kainulainen H. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 84833 HGNC: 30889 AceView: USMG5 Ensembl:ENSG00000173915 euGenes: HUgn84833
    ECgene: USMG5 H-InvDB: USMG5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for USMG5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for USMG5 gene:
    Search GeneIP for patents involving USMG5

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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