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USMG5 Gene

protein-coding   GIFtS: 48
GCID: GC10M105138

Up-Regulated During Skeletal Muscle Growth 5 Homolog (Mouse)

(Previous names: upregulated during skeletal muscle growth 5, upregulated...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Up-Regulated During Skeletal Muscle Growth 5 Homolog (Mouse)1 2     Upregulated During Skeletal Muscle Growth 51
DAPIT2 3 5     Upregulated During Skeletal Muscle Growth 5 Homolog (Mouse)1
Diabetes-Associated Protein In Insulin-Sensitive Tissues2 3     bA792D24.42
HCVFTP22 3     Up-Regulated During Skeletal Muscle Growth Protein 52
HCV F-Transactivated Protein 22 3     Upregulated During Skeletal Muscle Growth 5 Homolog2

External Ids:    HGNC: 308891   Entrez Gene: 848332   Ensembl: ENSG000001739157   OMIM: 6152045   UniProtKB: Q96IX53   

Export aliases for USMG5 gene to outside databases

Previous GC identifers: GC10M104814 GC10M098779


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for USMG5 Gene:
USMG5 (up-regulated during skeletal muscle growth 5 homolog (mouse)) is a protein-coding gene.

UniProtKB/Swiss-Prot: USMG5_HUMAN, Q96IX5
Function: Plays a critical role in maintaining the ATP synthase population in mitochondria




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the USMG5 gene promoter:
         RFX1   RP58   AML1a   FOXO3   POU3F2   Evi-1   FOXO3b   SRY   FOXO3a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUSMG5 promoter sequence
   Search Chromatin IP Primers for USMG5

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat USMG5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q24.33   Ensembl cytogenetic band:  10q24.33   HGNC cytogenetic band: 10q24.33

USMG5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
USMG5 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M105138:  view genomic region     (about GC identifiers)

Start:
105,148,798 bp from pter      End:
105,156,270 bp from pter
Size:
7,473 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: USMG5_HUMAN, Q96IX5 (See protein sequence)
Recommended Name: Up-regulated during skeletal muscle growth protein 5  
Size: 58 amino acids; 6458 Da
Subunit: Component of an ATP synthase complex composed of ATP5F1, ATP5G1, ATP5E, ATP5H, ATP5I, ATP5J, ATP5J2,
MT-ATP6, MT-ATP8, ATP5A1, ATP5B, ATP5D, ATP5C1, ATP5O, ATP5L, USMG5 and MP68 (By similarity)
Secondary accessions: B2R4N2 D3DR92

Explore the universe of human proteins at neXtProt for USMG5: NX_Q96IX5

Explore proteomics data for USMG5 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys17
  • Modification sites at PhosphoSitePlus

  • See USMG5 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001193355.1  NP_001193356.1  NP_116136.1  

    ENSEMBL proteins: 
     ENSP00000358840   ENSP00000358826   ENSP00000358830   ENSP00000311245   ENSP00000337705  

    USMG5 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for USMG5

     
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    antibodies-online antibodies for USMG5 (6 products) 

    USMG5 Assay Products:

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    antibodies-online kits for USMG5 (8 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR009125 DAPIT

    Graphical View of Domain Structure for InterPro Entry Q96IX5

    ProtoNet protein and cluster: Q96IX5


    Find genes that share domains with USMG5           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: USMG5_HUMAN, Q96IX5
    Function: Plays a critical role in maintaining the ATP synthase population in mitochondria
    Induction: Transactivated by SBP1

    Phenotypes:
         1 GenomeRNAi human phenotype for USMG5:

     Decreased influenza A/WSN/33 r 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for USMG5

    miRNA
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    miRTarBase miRNAs that target USMG5:
    hsa-mir-16-5p (MIRT051140), hsa-mir-99b-3p (MIRT038522), hsa-mir-378a-3p (MIRT043865), hsa-mir-423-3p (MIRT042507), hsa-mir-425-5p (MIRT039324)

    Block miRNA regulation of human, mouse, rat USMG5 using miScript Target Protectors
    4 qRT-PCR Assays for microRNAs that regulate USMG5:
    hsa-miR-493* hsa-let-7g* hsa-let-7a-2* hsa-miR-1272
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    Gene Editing
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    USMG5_HUMAN, Q96IX5: Mitochondrion membrane; Single-pass membrane protein (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    mitochondrion5
    cytosol3
    extracellular2
    nucleus2

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005739mitochondrion ----
    GO:0005743mitochondrial inner membrane ----
    GO:0005753mitochondrial proton-transporting ATP synthase complex ISS--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with USMG5           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for USMG5
    Interactions:

        Search GeneGlobe Interaction Network for USMG5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for USMG5 (Q96IX52, 3 ENSP000003112454) via UniProtKB, MINT, STRING, and/or I2D (see all 57)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ADRM1Q161862, 3, ENSP000002530034MINT-3373655 I2D: score=1 STRING: ENSP00000253003
    UBQLN4Q9NRR52, 3, ENSP000003572924MINT-2877588 I2D: score=3 STRING: ENSP00000357292
    C20orf24Q9BUV83, ENSP000003412134I2D: score=1 STRING: ENSP00000341213
    SLX4Q8IY923, ENSP000002940084I2D: score=1 STRING: ENSP00000294008
    TSC22D1Q157143, ENSP000003974354I2D: score=1 STRING: ENSP00000397435
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for USMG5



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for USMG5 gene (3 alternative transcripts): 
    NM_001206426.1  NM_001206427.1  NM_032747.3  

    Unigene Cluster for USMG5:

    Up-regulated during skeletal muscle growth 5 homolog (mouse)
    Hs.500921  [show with all ESTs]
    Unigene Representative Sequence: BE889962
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000369825 ENST00000369811 ENST00000369815(uc021pxl.1) ENST00000309579(uc001kwx.2)
    ENST00000337003(uc001kww.2)
    miRNA
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    hsa-miR-493* hsa-let-7g* hsa-let-7a-2* hsa-miR-1272
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat USMG5
      QuantiFast Probe-based Assays in human, mouse, rat USMG5

    Additional mRNA sequence: 

    AJ272056.1 AK311888.1 AL110185.1 AY740522.1 BC007087.1 BC072683.1 BC091507.1 

    16 DOTS entries:

    DT.101985833  DT.121272568  DT.87046000  DT.100044262  DT.101986246  DT.100715445  DT.95274793  DT.121309801 
    DT.97760567  DT.121272511  DT.87045999  DT.121272503  DT.121272526  DT.92440774  DT.95238978  DT.95300736 

    Selected AceView cDNA sequences (see all 233):

    AI133475 AI719475 AW358546 AA722455 BC072683 BM765916 BM661719 BM784503 
    BU940960 AA749507 W84725 F37904 AJ712776 CB107370 BE771230 F25953 
    AI809245 BM461842 AI207976 CB108019 H87273 BQ011420 BX109200 AA747245 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for USMG5    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
    SP1:              -     -                           
    SP2:              -           -                     
    SP3:              -     -     -                     
    SP4:                          -                     


    ECgene alternative splicing isoforms for USMG5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    USMG5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGATAATTCA
    USMG5 Expression
    About this image

    USMG5 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    USMG5 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.500921
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for USMG5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for USMG5 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Usmg51 , 5 upregulated during skeletal muscle growth 51, 5 90.8(n)1
    89.66(a)1
      19 (39.23 cM)5
    664771  NM_023211.41  NP_075700.21 
     470834715 
    chicken
    (Gallus gallus)
    Aves USMG56
    Gallus gallus up-regulated during skeletal muscle ...
    64(a)
    1 ↔ 1
    6(23144647-23148454)
    zebrafish
    (Danio rerio)
    Actinopterygii USMG56
    up-regulated during skeletal muscle growth 5 homol...
    64(a)
    1 ↔ 1
    1(49938536-49941291) ENSDARG00000096003


    ENSEMBL Gene Tree for USMG5 (if available)
    TreeFam Gene Tree for USMG5 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for USMG5 gene

    Find genes that share paralogs with USMG5           About GenesLikeMe


    3 Pseudogenes.org Pseudogenes for USMG5
    PGOHUM00000237159 PGOHUM00000243791 PGOHUM00000241853


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for USMG5 (see all 76)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1917325511,2
    --105149529(+) TATCCC/TCCAGG 3 -- int10--------
    rs70930391,2
    C--105149547(+) gtagcA/Ggcgca 3 -- int16Minor allele frequency- G:0.37NA CSA WA EA 363
    rs127705291,2
    C,F--105149645(+) caccaT/Cgcccg 3 -- int12Minor allele frequency- C:0.00NA 4
    rs1841417011,2
    --105149837(+) GGAGGG/TAATTA 3 -- int10--------
    rs1460621461,2
    --105149838(+) GAGGTA/TATTAA 3 -- int10--------
    rs1482484421,2
    --105149875(+) TGTTCA/GTCAGG 3 -- int10--------
    rs1412524841,2
    C--105149907(+) TTCTCA/GGATAT 3 -- int10--------
    rs1507571961,2
    --105149931(+) TCAACC/TGTTTT 3 -- int10--------
    rs1888431681,2
    --105149941(+) TGAGAC/TTGGAA 3 -- int10--------
    rs1821087351,2
    --105149954(+) GCTCTG/TAAGCA 3 -- int10--------

    HapMap Linkage Disequilibrium report for USMG5 (105148798 - 105156270 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for USMG5:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv7529CNV Insertion18451855

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing USMG5
    DNA2.0 Custom Variant and Variant Library Synthesis for USMG5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 615204    OMIM disorders: --


    Find genes that share disorders with USMG5           About GenesLikeMe


    Export disorders for USMG5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for USMG5 gene, integrated from 10 sources (see all 16):
    (articles sorted by number of sources associating them with USMG5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Knockdown of DAPIT (diabetes-associated protein in insulin-sensitive tissue) results in loss of ATP synthase in mitochondria. (PubMed id 21345788)1, 2 Ohsakaya S.... Yoshida M. (J. Biol. Chem. 2011)
    2. Study of transactivating effect of pre-S2 protein of hepatitis B virus and cloning of genes transactivated by pre-S2 protein with suppression subtractive hybridization. (PubMed id 16222733)1, 2 Ji D.... Guo J. (World J. Gastroenterol. 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (Nature 2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
    7. Genome-wide association analysis identifies 13 new risk loci for schizophrenia. (PubMed id 23974872)1 Ripke S....Sullivan P.F. (Nat. Genet. 2013)
    8. SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation. (PubMed id 23246001)1 Xu Y....Ye Y. (Cell Rep 2012)
    9. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    10. Cellular and tissue expression of DAPIT, a phylogenetically conserved peptide. (PubMed id 22688299)1 Kontro H....Kainulainen H. (Eur J Histochem 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 84833 HGNC: 30889 AceView: USMG5 Ensembl:ENSG00000173915 euGenes: HUgn84833
    ECgene: USMG5 H-InvDB: USMG5

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for USMG5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for USMG5 gene:
    Search GeneIP for patents involving USMG5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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