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Aliases for USF1P1 Gene

Subcategory (RNA class) for USF1P1 Gene

lncRNA

Aliases for USF1P1 Gene

  • Upstream Transcription Factor 1 Pseudogene 1 2 3 5
  • Upstream Transcription Factor 1 Pseudogene 2
  • USF1P 3

External Ids for USF1P1 Gene

ORGUL Members for USF1P1 Gene

Previous HGNC Symbols for USF1P1 Gene

  • USF1P

Previous GeneCards Identifiers for USF1P1 Gene

  • GC21P034707

Summaries for USF1P1 Gene

GeneCards Summary for USF1P1 Gene

USF1P1 (Upstream Transcription Factor 1 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for USF1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USF1P1 Gene

Genomics for USF1P1 Gene

Regulatory Elements for USF1P1 Gene

Enhancers for USF1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H033330 1 ENCODE dbSUPER 0.7 -2.8 -2849 2.5 PKNOX1 TAL1 CHAMP1 CC2D1A TCF12 POLR2A NCOR1 TRIM24 RUNX3 SOX6 IFNAR1 TMEM50B USF1P1
GH21H033323 1.4 ENCODE dbSUPER 0.4 -9.4 -9395 2.4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 PAXBP1 SON TMEM50B EVA1C GART LINC01548 ENSG00000226433 ENSG00000238220 OR7E23P IFNAR1
GH21H033359 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.9 26907 3.1 HDGF ARID4B ZNF48 ZNF2 YY1 ZNF143 ZNF207 FOS ATF7 RUNX3 IFNGR2 IFNAR2 SON DONSON IFNAR1 IL10RB GART OLIG1 GC21P033366 USF1P1
GH21H033339 0.8 Ensembl dbSUPER 0.4 +5.4 5430 0.4 ZNF362 CEBPG RUNX3 PRDM1 ATF2 USF1P1 GC21P033366
GH21H033346 0.6 FANTOM5 dbSUPER 0.4 +11.9 11918 0.4 PRDM1 ENSG00000249624 IFNAR2 LINC01548 ENSG00000231355 RPS5P3 TMEM50B OLIG1 OLIG2 USF1P1 GC21P033366
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around USF1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for USF1P1 Gene

Genomic Locations for USF1P1 Gene
chr21:33,334,571-33,335,100
(GRCh38/hg38)
Size:
530 bases
Orientation:
Plus strand
chr21:34,706,877-34,707,406
(GRCh37/hg19)

Genomic View for USF1P1 Gene

Genes around USF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USF1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USF1P1 Gene

Proteins for USF1P1 Gene

Post-translational modifications for USF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USF1P1 Gene

Domains & Families for USF1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USF1P1 Gene

Function for USF1P1 Gene

Phenotypes From GWAS Catalog for USF1P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USF1P1 Gene

Localization for USF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USF1P1 Gene

Pathways & Interactions for USF1P1 Gene

SuperPathways for USF1P1 Gene

No Data Available

Interacting Proteins for USF1P1 Gene

Gene Ontology (GO) - Biological Process for USF1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USF1P1 Gene

Drugs & Compounds for USF1P1 Gene

No Compound Related Data Available

Transcripts for USF1P1 Gene

mRNA/cDNA for USF1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for USF1P1 Gene

No ASD Table

Relevant External Links for USF1P1 Gene

GeneLoc Exon Structure for
USF1P1
ECgene alternative splicing isoforms for
USF1P1

Expression for USF1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USF1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of USF1P1 Gene:

USF1P1
genes like me logo Genes that share expression patterns with USF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USF1P1 Gene

Orthologs for USF1P1 Gene

Evolution for USF1P1 Gene

ENSEMBL:
Gene Tree for USF1P1 (if available)
TreeFam:
Gene Tree for USF1P1 (if available)

No data available for Orthologs for USF1P1 Gene

Paralogs for USF1P1 Gene

No data available for Paralogs for USF1P1 Gene

Variants for USF1P1 Gene

Relevant External Links for USF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for USF1P1 Gene

Disorders for USF1P1 Gene

No disorders were found for USF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for USF1P1 Gene

Publications for USF1P1 Gene

No publications were found for USF1P1 Gene.

Products for USF1P1 Gene

Sources for USF1P1 Gene

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