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Aliases for UPRT Gene

Aliases for UPRT Gene

  • Uracil Phosphoribosyltransferase Homolog 2 3 5
  • Uracil Phosphoribosyltransferase (FUR1) Homolog (S. Cerevisiae) 2
  • Uracil Phosphoribosyltransferase (FUR1) Homolog 3
  • UMP Pyrophosphorylase 3
  • RP11-311P8.3 3
  • EC 2.4.2.9 61
  • EC 2.4.2 61
  • UPRTase 3
  • FUR1 3
  • UPP 3

External Ids for UPRT Gene

Previous GeneCards Identifiers for UPRT Gene

  • GC0XP074411
  • GC0XP074412
  • GC0XP074493
  • GC0XP068128

Summaries for UPRT Gene

Entrez Gene Summary for UPRT Gene

  • This gene encodes uracil phosphoribosyltransferase, which catalyzes the conversion of uracil and 5-phosphoribosyl-1-R-diphosphate to uridine monophosphate (UMP). This reaction is an important part of nucleotide metabolism, specifically the pyrimidine salvage pathway. The enzyme localizes to the nucleus and cytoplasm. The protein is a potential target for rational design of drugs to treat parasitic infections and cancer. [provided by RefSeq, Nov 2009]

GeneCards Summary for UPRT Gene

UPRT (Uracil Phosphoribosyltransferase Homolog) is a Protein Coding gene. Among its related pathways are Purine metabolism (KEGG) and Metabolism.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPRT Gene

Genomics for UPRT Gene

Regulatory Elements for UPRT Gene

Enhancers for UPRT Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG075273 1 ENCODE 9.1 +0.5 502 3.0 PKNOX1 ATF1 SIN3A YY1 ELK1 FOS SP3 NFYC MBD2 RFX3 UPRT ABCB7 GC0XP075324
GH0XG075522 0.7 ENCODE 8.6 +249.1 249141 2.0 MXI1 HCFC1 BHLHE40 RBBP5 EBF1 EP300 POLR2A ZNF143 NBN MLLT1 ZDHHC15 UPRT PIR41146
GH0XG074612 1 ENCODE 3.8 -659.9 -659861 3.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 YY1 GLIS2 ELK1 ZNF143 UPRT RLIM PABPC1P3
GH0XG075546 0.2 ENCODE 4.3 +273.3 273277 2.0 UPRT PCNPP4 BRAFP1
GH0XG075278 0.4 ENCODE 0.4 +5.0 5018 1.3 GATA3 HNF4A ZDHHC15 UPRT GC0XP075324
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPRT on UCSC Golden Path with GeneCards custom track

Promoters for UPRT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000247287 642 2599 PKNOX1 ATF1 SIN3A YY1 FOS SP3 NFYC MBD2 RFX3 PBX2

Genomic Location for UPRT Gene

Chromosome:
X
Start:
75,274,059 bp from pter
End:
75,304,897 bp from pter
Size:
30,839 bases
Orientation:
Plus strand

Genomic View for UPRT Gene

Genes around UPRT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPRT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPRT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPRT Gene

Proteins for UPRT Gene

  • Protein details for UPRT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BW1-UPP_HUMAN
    Recommended name:
    Uracil phosphoribosyltransferase homolog
    Protein Accession:
    Q96BW1
    Secondary Accessions:
    • Q5JRL1
    • Q5JRL3
    • Q68DN0
    • Q96MW2

    Protein attributes for UPRT Gene

    Size:
    309 amino acids
    Molecular mass:
    33786 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for UPRT Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for UPRT Gene

Selected DME Specific Peptides for UPRT Gene

Q96BW1:
  • RRKVLLMYPILSTGNTVIEAV
  • CGVSIMR
  • VAPTHFGQ
  • EAMEQGL
  • DRLIRLVVE
  • MEQGLRDCCRS
  • NDQIRELQTIIRDKT
  • AKVYYAKFPPDI
  • ITILTTEVH
  • IILLSLFSTPHGA

Post-translational modifications for UPRT Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UPRT Gene

Antibody Products

  • Abcam antibodies for UPRT

Domains & Families for UPRT Gene

Protein Domains for UPRT Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for UPRT Gene

Graphical View of Domain Structure for InterPro Entry

Q96BW1

UniProtKB/Swiss-Prot:

UPP_HUMAN :
  • Belongs to the UPRTase family.
Family:
  • Belongs to the UPRTase family.
genes like me logo Genes that share domains with UPRT: view

No data available for Gene Families for UPRT Gene

Function for UPRT Gene

Enzyme Numbers (IUBMB) for UPRT Gene

Gene Ontology (GO) - Molecular Function for UPRT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004849 uridine kinase activity IBA --
GO:0005515 protein binding IPI 16189514
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with UPRT: view
genes like me logo Genes that share phenotypes with UPRT: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPRT Gene

Localization for UPRT Gene

Subcellular locations from UniProtKB/Swiss-Prot for UPRT Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UPRT gene
Compartment Confidence
cytosol 5
nucleus 4

Gene Ontology (GO) - Cellular Components for UPRT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IBA --
genes like me logo Genes that share ontologies with UPRT: view

Pathways & Interactions for UPRT Gene

genes like me logo Genes that share pathways with UPRT: view

Pathways by source for UPRT Gene

2 KEGG pathways for UPRT Gene

Gene Ontology (GO) - Biological Process for UPRT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006206 pyrimidine nucleobase metabolic process IBA --
GO:0006222 UMP biosynthetic process IEA --
GO:0007565 female pregnancy IEA --
GO:0007595 lactation IEA --
GO:0009116 nucleoside metabolic process IEA --
genes like me logo Genes that share ontologies with UPRT: view

No data available for SIGNOR curated interactions for UPRT Gene

Drugs & Compounds for UPRT Gene

(2) Drugs for UPRT Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Uracil Experimental Pharma 0
Uridine-5'-Monophosphate Experimental Pharma 0

(2) Additional Compounds for UPRT Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphoribosyl pyrophosphate
  • 5-Phospho-a-D-ribose-1-diphosphate
  • 5-Phospho-a-D-ribosyl pyrophosphate
  • 5-Phospho-alpha-D-ribose 1-diphosphate
  • 5-Phospho-alpha-D-ribose-1-diphosphate
  • 5-Phospho-alpha-D-ribosyl pyrophosphate
7540-64-9
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
genes like me logo Genes that share compounds with UPRT: view

Transcripts for UPRT Gene

Unigene Clusters for UPRT Gene

Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPRT Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c ^ 12a · 12b · 12c · 12d · 12e
SP1: - -
SP2: - - - - -
SP3: - - - - -
SP4: - - - - - - -
SP5: - - - - - -
SP6: - -
SP7: - - - -
SP8: - - - - -
SP9: - - - - - -
SP10:

Relevant External Links for UPRT Gene

GeneLoc Exon Structure for
UPRT
ECgene alternative splicing isoforms for
UPRT

Expression for UPRT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPRT Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for UPRT Gene

This gene is overexpressed in Urine (49.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UPRT Gene



NURSA nuclear receptor signaling pathways regulating expression of UPRT Gene:

UPRT

SOURCE GeneReport for Unigene cluster for UPRT Gene:

Hs.91612

mRNA Expression by UniProt/SwissProt for UPRT Gene:

Q96BW1-UPP_HUMAN
Tissue specificity: Highly expressed in leukocytes, liver, spleen and thymus, with lower expression in brain, lung and skeletal muscle.

Evidence on tissue expression from TISSUES for UPRT Gene

  • Nervous system(4.7)
genes like me logo Genes that share expression patterns with UPRT: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPRT Gene

Orthologs for UPRT Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for UPRT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UPRT 34 35
  • 99.46 (n)
cow
(Bos Taurus)
Mammalia UPRT 34 35
  • 91.72 (n)
dog
(Canis familiaris)
Mammalia UPRT 34 35
  • 90.43 (n)
mouse
(Mus musculus)
Mammalia Uprt 34 16 35
  • 88.67 (n)
rat
(Rattus norvegicus)
Mammalia Uprt 34
  • 88.35 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia UPRT 35
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia UPRT 35
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves UPRT 34 35
  • 76.93 (n)
lizard
(Anolis carolinensis)
Reptilia UPRT 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia uprt 34
  • 78.16 (n)
Str.4444 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.31769 34
zebrafish
(Danio rerio)
Actinopterygii uprt 34 35
  • 70.43 (n)
Dr.11713 34
fruit fly
(Drosophila melanogaster)
Insecta CG5537 34 35
  • 60.29 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007111 34
  • 58.95 (n)
worm
(Caenorhabditis elegans)
Secernentea C47B2.2 34 35
  • 55.11 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FUR1 34 35
  • 55.68 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR052C 34
  • 53.51 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E22903g 34
  • 51.66 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3454 35
  • 61 (a)
OneToOne
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC1B3.01c 34
  • 55.56 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU01446 34
  • 55.14 (n)
Species where no ortholog for UPRT was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for UPRT Gene

ENSEMBL:
Gene Tree for UPRT (if available)
TreeFam:
Gene Tree for UPRT (if available)

Paralogs for UPRT Gene

(2) SIMAP similar genes for UPRT Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with UPRT: view

No data available for Paralogs for UPRT Gene

Variants for UPRT Gene

Sequence variations from dbSNP and Humsavar for UPRT Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000581615 -- 75,295,442(+) GAAGT(A/G)AGTAT intron-variant, utr-variant-3-prime
rs1001048930 -- 75,280,328(+) TTTGT(A/G)TTCCT intron-variant
rs1001168909 -- 75,281,497(+) GAATG(C/T)TTTTT intron-variant
rs1001275614 -- 75,274,367(+) GGACC(A/T)CGCAG nc-transcript-variant, reference, missense
rs1001472023 -- 75,286,091(+) AAAAG(A/C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UPRT Gene

Variant ID Type Subtype PubMed ID
esv25282 CNV gain 19812545

Variation tolerance for UPRT Gene

Residual Variation Intolerance Score: 27.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.12; 2.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UPRT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPRT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UPRT Gene

Disorders for UPRT Gene

Relevant External Links for UPRT

Genetic Association Database (GAD)
UPRT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UPRT

No disorders were found for UPRT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UPRT Gene

Publications for UPRT Gene

  1. UPRT, a suicide-gene therapy candidate in higher eukaryotes, is required for Drosophila larval growth and normal adult lifespan. (PMID: 26271729) Ghosh A.C. … O'Connor M.B. (Sci Rep 2015) 2 3 64
  2. Identification and characterization of human uracil phosphoribosyltransferase (UPRTase). (PMID: 17384901) Li J. … Mao Y. (J. Hum. Genet. 2007) 3 4 64
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for UPRT Gene

Sources for UPRT Gene

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