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Aliases for UPK3BP1 Gene

Aliases for UPK3BP1 Gene

  • Uroplakin 3B Pseudogene 1 2 3 5

External Ids for UPK3BP1 Gene

Previous GeneCards Identifiers for UPK3BP1 Gene

  • GC00U933905
  • GC07P076634

Summaries for UPK3BP1 Gene

GeneCards Summary for UPK3BP1 Gene

UPK3BP1 (Uroplakin 3B Pseudogene 1) is a Pseudogene.

Additional gene information for UPK3BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPK3BP1 Gene

Genomics for UPK3BP1 Gene

Regulatory Elements for UPK3BP1 Gene

Enhancers for UPK3BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H077007 1.2 Ensembl ENCODE dbSUPER 23 +3.4 3384 0 SMARCE1 MAZ ESRRA NFIB NFIA SIN3A MNT DPF2 RAD21 YY1 UPK3BP1 ZP3 PMS2P11
GH07H077009 1 Ensembl ENCODE dbSUPER 13.9 +5.6 5646 1 RFX1 FOS TCF7L2 UPK3BP1 SPDYE18 PMS2P9 PMS2P11
GH07H076939 0.5 dbSUPER 25.3 -61.8 -61753 7 IKZF1 PRDM1 IKZF2 RELA SPI1 UPK3BP1 PMS2P9 SPDYE18 GC07M076948 GC07M076950 LOC105375358
GH07H077000 0.4 dbSUPER 25.6 -0.5 -450 6 PKNOX1 POLR2A UPK3BP1 SPDYE18 PMS2P9 DTX2P1
GH07H076979 0.4 dbSUPER 25.4 -24.6 -24619 1 PKNOX1 UPK3BP1 PMS2P9 DTX2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UPK3BP1 Gene

Chromosome:
7
Start:
77,004,662 bp from pter
End:
77,005,774 bp from pter
Size:
1,113 bases
Orientation:
Plus strand

Genomic View for UPK3BP1 Gene

Genes around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPK3BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPK3BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPK3BP1 Gene

Proteins for UPK3BP1 Gene

Post-translational modifications for UPK3BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPK3BP1 Gene

Domains & Families for UPK3BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPK3BP1 Gene

Function for UPK3BP1 Gene

Phenotypes From GWAS Catalog for UPK3BP1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UPK3BP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPK3BP1 Gene

Localization for UPK3BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPK3BP1 Gene

Pathways & Interactions for UPK3BP1 Gene

SuperPathways for UPK3BP1 Gene

No Data Available

Interacting Proteins for UPK3BP1 Gene

Gene Ontology (GO) - Biological Process for UPK3BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPK3BP1 Gene

Drugs & Compounds for UPK3BP1 Gene

No Compound Related Data Available

Transcripts for UPK3BP1 Gene

mRNA/cDNA for UPK3BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UPK3BP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for UPK3BP1 Gene

No ASD Table

Relevant External Links for UPK3BP1 Gene

GeneLoc Exon Structure for
UPK3BP1
ECgene alternative splicing isoforms for
UPK3BP1

Expression for UPK3BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPK3BP1 Gene

mRNA differential expression in normal tissues according to GTEx for UPK3BP1 Gene

This gene is overexpressed in Esophagus - Mucosa (x5.3), Bladder (x4.9), and Adipose - Visceral (Omentum) (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of UPK3BP1 Gene:

UPK3BP1
genes like me logo Genes that share expression patterns with UPK3BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPK3BP1 Gene

Orthologs for UPK3BP1 Gene

Evolution for UPK3BP1 Gene

ENSEMBL:
Gene Tree for UPK3BP1 (if available)
TreeFam:
Gene Tree for UPK3BP1 (if available)

No data available for Orthologs for UPK3BP1 Gene

Paralogs for UPK3BP1 Gene

No data available for Paralogs for UPK3BP1 Gene

Variants for UPK3BP1 Gene

Relevant External Links for UPK3BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPK3BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPK3BP1 Gene

Disorders for UPK3BP1 Gene

No disorders were found for UPK3BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPK3BP1 Gene

Publications for UPK3BP1 Gene

No publications were found for UPK3BP1 Gene.

Products for UPK3BP1 Gene

Sources for UPK3BP1 Gene

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