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Aliases for UPK3BP1 Gene

Aliases for UPK3BP1 Gene

  • Uroplakin 3B Pseudogene 1 2 3 5

External Ids for UPK3BP1 Gene

Previous GeneCards Identifiers for UPK3BP1 Gene

  • GC00U933905
  • GC07P076634

Summaries for UPK3BP1 Gene

GeneCards Summary for UPK3BP1 Gene

UPK3BP1 (Uroplakin 3B Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPK3BP1 Gene

Genomics for UPK3BP1 Gene

Regulatory Elements for UPK3BP1 Gene

Enhancers for UPK3BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F077007 0.6 ENCODE 23.1 +3.4 3384 0.7 SCRT1 MAZ ATF1 ESRRA NFIA CEBPB MNT NR3C1 ATF2 YY1 UPK3BP1 ZP3 PMS2P11
GH07F076975 0.7 ENCODE 17.5 -29.4 -29424 0.2 ZNF146 UPK3BP1 LOC105375361 FDPSP7
GH07F077009 1 Ensembl ENCODE 13.9 +5.6 5646 1.0 RFX1 FOS TCF7L2 UPK3BP1 SPDYE18 PMS2P9 PMS2P11
GH07F077006 0.2 Ensembl 12.2 +1.7 1747 0.8 UPK3BP1 PMS2P11
GH07F076912 0.5 Ensembl 10 -92.3 -92261 0.8 SOX13 SOX5 IRF1 UPK3BP1 LOC105375358 GC07M076948 GC07M076950
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UPK3BP1 Gene

Chromosome:
7
Start:
77,004,662 bp from pter
End:
77,005,774 bp from pter
Size:
1,113 bases
Orientation:
Plus strand

Genomic View for UPK3BP1 Gene

Genes around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPK3BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPK3BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPK3BP1 Gene

Proteins for UPK3BP1 Gene

Post-translational modifications for UPK3BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPK3BP1 Gene

Domains & Families for UPK3BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPK3BP1 Gene

Function for UPK3BP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPK3BP1 Gene

Localization for UPK3BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPK3BP1 Gene

Pathways & Interactions for UPK3BP1 Gene

SuperPathways for UPK3BP1 Gene

No Data Available

Interacting Proteins for UPK3BP1 Gene

Gene Ontology (GO) - Biological Process for UPK3BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPK3BP1 Gene

Transcripts for UPK3BP1 Gene

mRNA/cDNA for UPK3BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPK3BP1 Gene

No ASD Table

Relevant External Links for UPK3BP1 Gene

GeneLoc Exon Structure for
UPK3BP1
ECgene alternative splicing isoforms for
UPK3BP1

Expression for UPK3BP1 Gene

mRNA expression in normal human tissues for UPK3BP1 Gene

mRNA differential expression in normal tissues according to GTEx for UPK3BP1 Gene

This gene is overexpressed in Esophagus - Mucosa (x5.3), Bladder (x4.9), and Adipose - Visceral (Omentum) (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of UPK3BP1 Gene:

UPK3BP1
genes like me logo Genes that share expression patterns with UPK3BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UPK3BP1 Gene

Orthologs for UPK3BP1 Gene

Evolution for UPK3BP1 Gene

ENSEMBL:
Gene Tree for UPK3BP1 (if available)
TreeFam:
Gene Tree for UPK3BP1 (if available)

No data available for Orthologs for UPK3BP1 Gene

Paralogs for UPK3BP1 Gene

No data available for Paralogs for UPK3BP1 Gene

Variants for UPK3BP1 Gene

Relevant External Links for UPK3BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPK3BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPK3BP1 Gene

Disorders for UPK3BP1 Gene

No disorders were found for UPK3BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPK3BP1 Gene

Publications for UPK3BP1 Gene

No publications were found for UPK3BP1 Gene.

Products for UPK3BP1 Gene

Sources for UPK3BP1 Gene

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