UPK2 Gene
protein-coding GIFtS: 50
GCID: GC11P118795
|
|
uroplakin 2
| |
Aliases
for UPK2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Uroplakin 21 2 | | UP21 2 3 5 | | UPII1 2 3 5 | | Uroplakin II2 3 | | MGC1385981 | | Uroplakin-21 |
Export aliases for UPK2 gene to outside databasesPrevious GC identifers: GC11P134018 GC11P120338 GC11P118829 GC11P118364 GC11P118332 GC11P114766 |
Summaries
for UPK2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for UPK2:
This gene encodes one of the proteins of the highly conserved urothelium-specific integral membrane proteins of theasymmetric unit membrane which forms urothelium apical plaques in mammals. The asymmetric unit membrane is believed tostrengthen the urothelium by preventing cell rupture during bladder distention. The encoded protein is expressed inthe peripheral blood of bladder cancer patients with transitional cell carcinomas.(provided by RefSeq, Sep 2009)
UniProtKB/Swiss-Prot: UPK2_HUMAN, O00526Function: Component of the asymmetric unit membrane (AUM); a highly specialized biomembrane elaborated by terminallydifferentiated urothelial cells. May play an important role in regulating the assembly of the AUM (By similarity)
Gene Wiki entry for UPK2
|
Genomic Views
for UPK2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_033899.8
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the UPK2 gene promoter:
Spz1 AML1a MAZR p53 CUTL1 RelA NF-kappaB S8 Pax-4a NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for UPK2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UPK2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q23 Ensembl cytogenetic band: 11q23.3 HGNC cytogenetic band: 11q23UPK2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P118795: view genomic region
(about GC identifiers)
Start:
|
118,795,873 bp from pter |
End:
|
118,829,269 bp from pter |
Size:
|
33,397 bases |
Orientation:
|
plus strand |
|
Proteins
for UPK2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: UPK2_HUMAN, O00526 (See
protein sequence)Recommended Name: Uroplakin-2 precursor Size: 184 amino acids; 19438 Da
Subunit: Interacts with uroplakin-1a (UPK1A) (By similarity)
Subcellular location: Cell membrane; Single-pass type I membrane protein (Potential). Note=Heterodimer formation withUPK1A is a prerequisite to exit out of the endoplasmic reticulum (ER) (By similarity)
Secondary accessions: B0YJ92 O00457 Q53YV0Explore the universe of human proteins at neXtProt for UPK2: NX_O00526
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O00526
UPK2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_006751.1
ENSEMBL proteins: ENSP00000264031
Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005887 | integral to plasma membrane |
TAS | 8175808 | | GO:0016324 | apical plasma membrane |
IEA | -- | | GO:0030176 | integral to endoplasmic reticulum membrane |
IEA | -- |
UPK2 for ontologies About GeneDecksing
UPK2 Antibody Products:
Assay Products for UPK2: |
Protein
Domains /
Families
for UPK2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
UPK2 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry O00526ProtoNet protein and cluster: O00526 1 Blocks protein family: IPB009952 Uroplakin II
UniProtKB/Swiss-Prot: UPK2_HUMAN, O00526Similarity: Belongs to the uroplakin-2 family |
Function
for UPK2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: UPK2_HUMAN, O00526Function: Component of the asymmetric unit membrane (AUM); a highly specialized biomembrane elaborated by terminallydifferentiated urothelial cells. May play an important role in regulating the assembly of the AUM (By similarity) Genatlas biochemistry entry for UPK2:uroplakin 2,urothelium specific transmembrane protein forming 12nm protein particles in association with other UPKs,atthe asymetric unit membrane of the bladder epithelium,strenghthening and stabilizing the urothelial epithelial surfacetrough its interactions with the underlying cytoskeleton,continuously expressed by the majority of transitional cellcarcinoma of the bladder (TCC), in a region of partial synteny to chromosome 11
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UPK2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UPK2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UPK2 |
Animal Models:
Mouse knock-out Upk2tm1Tsun for UPK2
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Upk2):
UPK2 for phenotypes About GeneDecksing
|
Pathways & Interactions
for UPK2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for UPK2
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
2 Interacting proteins for UPK2 (O005263 ENSP000002640314) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
UPK2 for ontologies About GeneDecksing
|
Drugs & Compounds
for UPK2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
UPK2 for compounds About GeneDecksing
 Browse Tocris compounds for UPK2
1 Novoseek chemical compound relationship for UPK2 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| troglitazone |
47.2 |
3 |
15054105 (1), 16105033 (1) |
Search CenterWatch for drugs/clinical trials and news about UPK2
|
Transcripts
for UPK2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for UPK2 gene: NM_006760.3 Unigene Cluster for UPK2: Uroplakin 2 Hs.379613 [show with all ESTs]Unigene Representative Sequence: AK1281812 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000534788 ENST00000264031(uc001puh.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UPK2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UPK2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: UPK2 (NM_006760) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UPK2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UPK2 |
Additional cDNA sequence: AB009454.1 AF000562.1 AK128181.1 AY455312.1 BC113900.1 Y13645.1 2 DOTS entries: DT.92416886 DT.101972424 9 AceView cDNA sequences: AY455312 AB009454 NM_006760 BG489265 Y13645 BX283541 CD556028 BQ640714 AF000562
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for UPK2 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 |
|---|
|
| SP1: | | | | | | | | | - | | | | | | |
| SP2: | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for UPK2
|
Expression
for UPK2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| UPK2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTCCTGCTGG
About this image
See UPK2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for UPK2
SOURCE GeneReport for Unigene cluster: Hs.379613
UniProtKB/Swiss-Prot: UPK2_HUMAN, O00526Tissue specificity: Expressed in ureter
SABiosciences Custom PCR Arrays for UPK2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UPK2
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UPK2 |
Orthologs
for UPK2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of human and mouse.
Orthologs for UPK2 gene from 1/6 species (see all 6) About this table
ENSEMBL Gene Tree for UPK2 (if available)
TreeFam Gene Tree for UPK2 (if available) |
Paralogs
for UPK2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for UPK2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for UPK2 (118795873 - 118829269 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for UPK2
1 CNV: 58497 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UPK2 |
|
Disorders
/ Diseases
for UPK2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
UPK2 for disorders About GeneDecksing
OMIM gene information: 611558
OMIM disorders: --
11  diseases for UPK2: About MalaCardstransitional cell carcinoma carcinoma ovarian brenner tumor vesicoureteral reflux
urinary bladder cancer bladder squamous cell carcinoma squamous cell carcinoma bladder carcinoma in situ
cystitis bladder carcinoma prostatitis
5 diseases from the University of Copenhagen DISEASES database for UPK2:Urinary bladder cancer Transitional cell carcinoma Bladder carcinoma in situ Cystitis
Vesicoureteral reflux 8 Novoseek disease relationships for UPK2 gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bladder cancer |
74.3 |
26 |
12624658 (4), 10458411 (3), 15059347 (3), 18440837 (2) (see all 9) |
| carcinoma transitional cell |
70.9 |
6 |
9846985 (1), 10458411 (1), 19513619 (1), 12474225 (1) (see all 5) |
| metastasis |
39.1 |
3 |
10458411 (1), 12474225 (1), 16280744 (1) |
| carcinoma |
37.4 |
1 |
16619260 (1) |
| cancer |
23.9 |
10 |
15059347 (3), 12792753 (2), 15017198 (1), 10955799 (1) |
| primary tumor |
23 |
2 |
11410485 (1) |
| tumors |
21.7 |
6 |
14963492 (1), 11297251 (1), 18696039 (1) |
| cancer lung |
0 |
1 |
15059347 (1) |
Export disorders for UPK2 gene to outside databases
|
Publications
for UPK2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for UPK2 gene, integrated from 9 sources (see all 45):
(articles sorted by number of sources associating them with UPK2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Uroplakin gene expression by normal and neoplastic human urothelium. (PubMed id 9846985)1, 2, 3, 9 Lobban E.D.... Southgate J. (1998)
- Genetic detection for hematogenous micrometastasis in patients with various types of malignant tumors using Uroplakin II derived primers in polymerase chain reaction. (PubMed id 12792753)1, 2, 9 Hirata H....Kanamaru T. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Uroplakin II gene is expressed in transitional cell carcinoma but not in bilharzial bladder squamous cell carcinoma: alternative pathways of bladder epithelial differentiation and tumor formation. (PubMed id 9515818)1, 3 Wu R.L....Sun T.T. (1998)
- Mutation analyses of Uroplakin II in children with renal tract malformations. (PubMed id 17012268)1, 9 Jenkins D....Woolf A.S. (2006)
- Prostate stem cell antigen enhancer and uroplakin II promoter based bladder cancer targeted tissue-specific vector. (PubMed id 18440837)1, 9 Wang D....Rodriguez R. (2010)
- Detection of circulating uroplakin-positive cells in patients with transitional cell carcinoma of the bladder. (PubMed id 10458411)1, 9 Li S.M....Wu X.R. (1999)
- Expression of transitional cell-specific genes, uroplakin Ia and II, in bladder cancer: detection of circulating cancer cells in the peripheral blood of metastatic patients. (PubMed id 10404304)1, 9 Yuasa T....Okada Y. (1999)
- Selective interactions of UPIa and UPIb, two members of the transmembrane 4 superfamily, with distinct single transmembrane-domained proteins in differentiated urothelial cells. (PubMed id 8530366)1, 9 Wu X.R....Sun T.T. (1995)
- Cloning of human uroplakin II gene from Chinese transitional cell carcinoma of bladder and construction of its eukaryotic expression vector. (PubMed id 16116969)1, 9 Chen F....Lu G. (2005)
|
External Searches for UPK2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing UPK2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing UPK2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UPK2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for UPK2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for UPK2 gene:
Search GeneIP for patents involving UPK2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for UPK2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat UPK2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UPK2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UPK2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat UPK2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UPK2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat UPK2 |
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| |  |  |  |  | | | | |
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 | | | UPK2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UPK2 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UPK2 |
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