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Aliases for UPK1A-AS1 Gene

Subcategory (RNA class) for UPK1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UPK1A-AS1 Gene

  • UPK1A Antisense RNA 1 2 3 5
  • UPK1A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UPK1A-AS1 Gene

Previous GeneCards Identifiers for UPK1A-AS1 Gene

  • GC19M036160
  • GC19M036283
  • GC19M036541
  • GC19M037059
  • GC19M035770
  • GC19M035927
  • GC19M035952
  • GC19M036822

Summaries for UPK1A-AS1 Gene

GeneCards Summary for UPK1A-AS1 Gene

UPK1A-AS1 (UPK1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPK1A-AS1 Gene

Genomics for UPK1A-AS1 Gene

Regulatory Elements for UPK1A-AS1 Gene

Enhancers for UPK1A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F035693 0.5 ENCODE 11.5 -20.7 -20663 0.2 PKNOX1 WRNIP1 ARID4B SIN3A YBX1 ZNF2 SLC30A9 ZNF207 ZNF143 ZNF548 TMEM147-AS1 ZNF792 RBM42 ZNF567 KMT2B HAUS5 LRFN3 LOC101927572 ENSG00000267049 UPK1A
GH19F035533 1.1 Ensembl ENCODE 4.3 +139.3 139291 1.2 ELF3 KLF1 ATF1 TBL1XR1 HIC1 GLIS2 POLR2A NR2F6 CREM EGR2 TMEM147 ATP4A UPK1A-AS1 GAPDHS
GH19F035672 0.2 ENCODE 0.8 +0.0 21 1.1 ATF1 SAP130 ZMYM3 SIN3A ZNF121 ZFHX2 GLIS2 POLR2A PATZ1 PRDM10 LINC01529 UPK1A UPK1A-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UPK1A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UPK1A-AS1 Gene

Chromosome:
19
Start:
35,667,948 bp from pter
End:
35,673,291 bp from pter
Size:
5,344 bases
Orientation:
Minus strand

Genomic View for UPK1A-AS1 Gene

Genes around UPK1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPK1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPK1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPK1A-AS1 Gene

Proteins for UPK1A-AS1 Gene

Post-translational modifications for UPK1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPK1A-AS1 Gene

Domains & Families for UPK1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPK1A-AS1 Gene

Function for UPK1A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPK1A-AS1 Gene

Localization for UPK1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPK1A-AS1 Gene

Pathways & Interactions for UPK1A-AS1 Gene

SuperPathways for UPK1A-AS1 Gene

No Data Available

Interacting Proteins for UPK1A-AS1 Gene

Gene Ontology (GO) - Biological Process for UPK1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPK1A-AS1 Gene

Transcripts for UPK1A-AS1 Gene

mRNA/cDNA for UPK1A-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UPK1A-AS1 Gene

UPK1A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UPK1A-AS1 Gene

No ASD Table

Relevant External Links for UPK1A-AS1 Gene

GeneLoc Exon Structure for
UPK1A-AS1
ECgene alternative splicing isoforms for
UPK1A-AS1

Expression for UPK1A-AS1 Gene

mRNA expression in normal human tissues for UPK1A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UPK1A-AS1 Gene

This gene is overexpressed in Bladder (x36.5) and Vagina (x5.0).

SOURCE GeneReport for Unigene cluster for UPK1A-AS1 Gene:

Hs.569952
genes like me logo Genes that share expression patterns with UPK1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UPK1A-AS1 Gene

Orthologs for UPK1A-AS1 Gene

Evolution for UPK1A-AS1 Gene

ENSEMBL:
Gene Tree for UPK1A-AS1 (if available)
TreeFam:
Gene Tree for UPK1A-AS1 (if available)

No data available for Orthologs for UPK1A-AS1 Gene

Paralogs for UPK1A-AS1 Gene

No data available for Paralogs for UPK1A-AS1 Gene

Variants for UPK1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for UPK1A-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401695 -- 35,669,932(+) gctac(A/G)tgctg intron-variant
rs10413518 -- 35,668,468(+) CTGTC(C/T)CTGTT nc-transcript-variant, reference, synonymous-codon
rs10424849 -- 35,674,914(+) gtgtg(C/T)gcctg intron-variant, upstream-variant-2KB
rs111275297 -- 35,668,638(+) CCGCC(A/G)GTCCA nc-transcript-variant, reference, missense
rs111312132 -- 35,670,641(+) GGGTA(C/T)GATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UPK1A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv659e214 CNV loss 21293372
esv2666558 CNV deletion 23128226
esv3644241 CNV gain 21293372
nsv1118827 CNV deletion 24896259
nsv526166 CNV loss 19592680
nsv579422 CNV loss 21841781
nsv817832 CNV loss 17921354

Relevant External Links for UPK1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPK1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UPK1A-AS1 Gene

Disorders for UPK1A-AS1 Gene

Relevant External Links for UPK1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UPK1A-AS1

No disorders were found for UPK1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UPK1A-AS1 Gene

Publications for UPK1A-AS1 Gene

  1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for UPK1A-AS1 Gene

Sources for UPK1A-AS1 Gene

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