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Aliases for UPF3AP2 Gene

Subcategory (RNA class) for UPF3AP2 Gene

lncRNA

Aliases for UPF3AP2 Gene

  • UPF3A Pseudogene 2 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 2 2

External Ids for UPF3AP2 Gene

ORGUL Members for UPF3AP2 Gene

Previous GeneCards Identifiers for UPF3AP2 Gene

  • GC17M020278

Summaries for UPF3AP2 Gene

GeneCards Summary for UPF3AP2 Gene

UPF3AP2 (UPF3A Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP2 Gene

Genomics for UPF3AP2 Gene

Regulatory Elements for UPF3AP2 Gene

Enhancers for UPF3AP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019456 1.7 FANTOM5 Ensembl ENCODE 11.6 +915.7 915654 9.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF286B ENSG00000235979 ENSG00000264885 MFAP4 MAPK7 B9D1 UPF3AP2 ENSG00000227078 EPN2 SLC47A1
GH17F021039 1.5 FANTOM5 ENCODE 11.6 -665.4 -665431 5.5 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CCDC144NL-AS1 USP22 MEIS3P2 UPF3AP2 DHRS7B USP32P3 PIR42715
GH17F020063 1.4 FANTOM5 Ensembl ENCODE 12 +312.0 311990 3.5 GTF2F1 TBP ESRRA TAF1 JUN MAX SIN3A ZNF664 ZFHX2 ZNF366 SPECC1 LGALS9B ENSG00000261033 UPF3AP2 AKAP10 ENSG00000225681 LOC105371579
GH17F019506 1.4 Ensembl ENCODE 10.6 +869.0 869004 2.6 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 ZNF207 FOS KLF13 DEK TVP23B ENSG00000264885 ENSG00000264932 ENSG00000262202 UPF3AP2 FAM106A SLC47A1 LOC102724624 ENSG00000235979 SNORD3B-1
GH17F019992 1.2 Ensembl ENCODE 11.6 +383.8 383794 0.7 SIN3A FEZF1 ZNF48 ZNF2 ZNF121 GLIS2 DEK ZNF263 REST ATF4 UPF3AP2 GC17P019998 AKAP10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805839 139 600 POLR2A SMARCA4 ZNF512

Genomic Location for UPF3AP2 Gene

Chromosome:
17
Start:
20,374,816 bp from pter
End:
20,376,840 bp from pter
Size:
2,025 bases
Orientation:
Minus strand

Genomic View for UPF3AP2 Gene

Genes around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP2 Gene

Proteins for UPF3AP2 Gene

Post-translational modifications for UPF3AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP2 Gene

Domains & Families for UPF3AP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP2 Gene

Function for UPF3AP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP2 Gene

Localization for UPF3AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPF3AP2 Gene

Pathways & Interactions for UPF3AP2 Gene

SuperPathways for UPF3AP2 Gene

No Data Available

Interacting Proteins for UPF3AP2 Gene

Gene Ontology (GO) - Biological Process for UPF3AP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPF3AP2 Gene

Transcripts for UPF3AP2 Gene

mRNA/cDNA for UPF3AP2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP2 Gene

No ASD Table

Relevant External Links for UPF3AP2 Gene

GeneLoc Exon Structure for
UPF3AP2
ECgene alternative splicing isoforms for
UPF3AP2

Expression for UPF3AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UPF3AP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP2 Gene:

UPF3AP2
genes like me logo Genes that share expression patterns with UPF3AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UPF3AP2 Gene

Orthologs for UPF3AP2 Gene

Evolution for UPF3AP2 Gene

ENSEMBL:
Gene Tree for UPF3AP2 (if available)
TreeFam:
Gene Tree for UPF3AP2 (if available)

No data available for Orthologs for UPF3AP2 Gene

Paralogs for UPF3AP2 Gene

No data available for Paralogs for UPF3AP2 Gene

Variants for UPF3AP2 Gene

Relevant External Links for UPF3AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPF3AP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP2 Gene

Disorders for UPF3AP2 Gene

No disorders were found for UPF3AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP2 Gene

Publications for UPF3AP2 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64

Products for UPF3AP2 Gene

Sources for UPF3AP2 Gene

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