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Aliases for UPF3AP2 Gene

Subcategory (RNA class) for UPF3AP2 Gene


Aliases for UPF3AP2 Gene

  • UPF3A Pseudogene 2 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 2 2

External Ids for UPF3AP2 Gene

ORGUL Members for UPF3AP2 Gene

Previous GeneCards Identifiers for UPF3AP2 Gene

  • GC17M020278

Summaries for UPF3AP2 Gene

GeneCards Summary for UPF3AP2 Gene

UPF3AP2 (UPF3A Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for UPF3AP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP2 Gene

Genomics for UPF3AP2 Gene

Regulatory Elements for UPF3AP2 Gene

Enhancers for UPF3AP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H021039 1.7 FANTOM5 ENCODE dbSUPER 30.7 -665.4 -665431 5.5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MEIS3P2 UPF3AP2 CCDC144NL-AS1 USP22 ENSG00000266050 DHRS7B ENSG00000244582 USP32P3 PIR42715
GH17H019506 1.4 Ensembl ENCODE 31.8 +869.0 869004 2.6 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 ZNF207 FOS DEK SP3 UPF3AP2 TVP23B ENSG00000264885 ZNF286B MAPK7 FAM106A PRPSAP2 ENSG00000264932 ENSG00000273018 USP32P2
GH17H019726 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.5 +649.0 649020 3.1 FOXA2 NFIB RAD21 YY1 ZNF23 RCOR1 ATF7 EGR2 ZNF362 USF2 UPF3AP2 ENSG00000252349 ALDH3A2 SLC47A1 PRPSAP2 B9D1 SLC47A2 ALDH3A1 MAPK7 ENSG00000264785
GH17H019456 1.4 FANTOM5 Ensembl ENCODE 11.6 +916.1 916054 8.8 HDGF PKNOX1 RB1 BACH1 MAX ZNF766 POLR2A ZNF143 ATF7 ETV6 ZNF286B ENSG00000235979 ENSG00000264885 MFAP4 B9D1 MAPK7 UPF3AP2 LINC02094 EPN2 SLC47A1
GH17H021322 1.3 Ensembl ENCODE 11 -946.4 -946361 1.2 HDGF ATF1 ARNT ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 ETS1 RNFT1P3 ENSG00000263729 ENSG00000244456 SCDP1 ENSG00000265916 COTL1P2 LOC729334 LINC02088 TBC1D3P3 ENSG00000266925
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000092356 40 401 ZNF512

Genomic Locations for UPF3AP2 Gene

Genomic Locations for UPF3AP2 Gene
2,025 bases
Minus strand

Genomic View for UPF3AP2 Gene

Genes around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP2 Gene

Proteins for UPF3AP2 Gene

Post-translational modifications for UPF3AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP2 Gene

Domains & Families for UPF3AP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP2 Gene

Function for UPF3AP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP2 Gene

Localization for UPF3AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPF3AP2 Gene

Pathways & Interactions for UPF3AP2 Gene

SuperPathways for UPF3AP2 Gene

No Data Available

Interacting Proteins for UPF3AP2 Gene

Gene Ontology (GO) - Biological Process for UPF3AP2 Gene


No data available for Pathways by source and SIGNOR curated interactions for UPF3AP2 Gene

Drugs & Compounds for UPF3AP2 Gene

No Compound Related Data Available

Transcripts for UPF3AP2 Gene

mRNA/cDNA for UPF3AP2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP2 Gene

No ASD Table

Relevant External Links for UPF3AP2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UPF3AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP2 Gene:

genes like me logo Genes that share expression patterns with UPF3AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP2 Gene

Orthologs for UPF3AP2 Gene

Evolution for UPF3AP2 Gene

Gene Tree for UPF3AP2 (if available)
Gene Tree for UPF3AP2 (if available)

No data available for Orthologs for UPF3AP2 Gene

Paralogs for UPF3AP2 Gene

No data available for Paralogs for UPF3AP2 Gene

Variants for UPF3AP2 Gene

Relevant External Links for UPF3AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP2 Gene

Disorders for UPF3AP2 Gene

No disorders were found for UPF3AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP2 Gene

Publications for UPF3AP2 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 2 3 60

Products for UPF3AP2 Gene

Sources for UPF3AP2 Gene

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