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Aliases for UPF3AP2 Gene

Subcategory (RNA class) for UPF3AP2 Gene

lncRNA

Aliases for UPF3AP2 Gene

  • UPF3A Pseudogene 2 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 2 2

External Ids for UPF3AP2 Gene

ORGUL Members for UPF3AP2 Gene

Previous GeneCards Identifiers for UPF3AP2 Gene

  • GC17M020278

Summaries for UPF3AP2 Gene

GeneCards Summary for UPF3AP2 Gene

UPF3AP2 (UPF3A Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP2 Gene

Genomics for UPF3AP2 Gene

Regulatory Elements for UPF3AP2 Gene

Enhancers for UPF3AP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G021039 1.8 FANTOM5 ENCODE dbSUPER 11 -665.4 -665431 5.5 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZNF610 CCDC144NL-AS1 USP22 MEIS3P2 DHRS7B UPF3AP2 RPL21P120 USP32P3 PIR42715
GH17G020063 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12 +312.1 312143 3.2 GTF2F1 TBP ESRRA TAF1 SREBF2 JUN MAX SIN3A ZNF664 ZFHX2 SPECC1 LGALS9B ENSG00000261033 UPF3AP2 AKAP10 ENSG00000225681 LOC105371579
GH17G021322 1.3 Ensembl ENCODE 11 -946.4 -946361 1.2 HDGF ATF1 CREB3L1 ARNT ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 UPF3AP2 KCNJ12 MAP2K3 MEIS3P2 PIR55402 GC17M021294
GH17G021345 0.9 ENCODE 10.2 -970.8 -970750 4.0 HDGF PKNOX1 ZBTB7B GLIS2 FOS REST ZNF623 TBX21 SMARCA4 GLIS1 KCNJ12 UPF3AP2 GC17M021334 GC17P024175
GH17G020380 0.8 Ensembl ENCODE 0.7 -4.3 -4293 1.3 CTCF ZNF654 ZNF316 ZNF211 ZNF143 REST RAD21 UPF3AP2 USP32P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000092356 40 401 SMARCA4 POLR2A ZNF512

Genomic Location for UPF3AP2 Gene

Chromosome:
17
Start:
20,374,816 bp from pter
End:
20,376,840 bp from pter
Size:
2,025 bases
Orientation:
Minus strand

Genomic View for UPF3AP2 Gene

Genes around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP2 Gene

Proteins for UPF3AP2 Gene

Post-translational modifications for UPF3AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP2 Gene

Domains & Families for UPF3AP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP2 Gene

Function for UPF3AP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP2 Gene

Localization for UPF3AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPF3AP2 Gene

Pathways & Interactions for UPF3AP2 Gene

SuperPathways for UPF3AP2 Gene

No Data Available

Interacting Proteins for UPF3AP2 Gene

Gene Ontology (GO) - Biological Process for UPF3AP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPF3AP2 Gene

Drugs & Compounds for UPF3AP2 Gene

No Compound Related Data Available

Transcripts for UPF3AP2 Gene

mRNA/cDNA for UPF3AP2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP2 Gene

No ASD Table

Relevant External Links for UPF3AP2 Gene

GeneLoc Exon Structure for
UPF3AP2
ECgene alternative splicing isoforms for
UPF3AP2

Expression for UPF3AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP2 Gene:

UPF3AP2
genes like me logo Genes that share expression patterns with UPF3AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP2 Gene

Orthologs for UPF3AP2 Gene

Evolution for UPF3AP2 Gene

ENSEMBL:
Gene Tree for UPF3AP2 (if available)
TreeFam:
Gene Tree for UPF3AP2 (if available)

No data available for Orthologs for UPF3AP2 Gene

Paralogs for UPF3AP2 Gene

No data available for Paralogs for UPF3AP2 Gene

Variants for UPF3AP2 Gene

Relevant External Links for UPF3AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPF3AP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP2 Gene

Disorders for UPF3AP2 Gene

No disorders were found for UPF3AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP2 Gene

Publications for UPF3AP2 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64

Products for UPF3AP2 Gene

Sources for UPF3AP2 Gene

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