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Aliases for UPF3AP1 Gene

Subcategory (RNA class) for UPF3AP1 Gene


Aliases for UPF3AP1 Gene

  • UPF3A Pseudogene 1 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 1 2

External Ids for UPF3AP1 Gene

ORGUL Members for UPF3AP1 Gene

Previous GeneCards Identifiers for UPF3AP1 Gene

  • GC17M016649

Summaries for UPF3AP1 Gene

GeneCards Summary for UPF3AP1 Gene

UPF3AP1 (UPF3A Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP1 Gene

Genomics for UPF3AP1 Gene

Regulatory Elements for UPF3AP1 Gene

Enhancers for UPF3AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F017027 0.9 Ensembl ENCODE 14.3 -283.2 -283239 5.9 HDGF ATF1 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 KLF7 FOS UPF3AP1 FLCN LOC100419436 MPRIP PLD6 ENSG00000260328
GH17F017590 0.8 FANTOM5 ENCODE 14.3 -845.2 -845207 3.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC100419436 FAM106A SMCR8 LOC644422 DRG2 ACTG1P24 UPF3AP1 PEMT MPRIP-AS1 USP32P2
GH17F017234 0.6 ENCODE 14.3 -490.0 -489996 3.5 ARNT MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FLCN NT5M UPF3AP1 LOC644422 LOC100419436 PLD6 ENSG00000264187 ENSG00000266498
GH17F016652 0.2 ENCODE 12.1 +93.2 93196 1.9 CREB3L1 ARID4B SIN3A GLI4 DMAP1 ZNF48 ZNF2 ETS1 YY1 SLC30A9 UPF3AP1 ZNF624 NEK4P2 ENSG00000264765 GC17P016634
GH17F016363 1 Ensembl ENCODE 12 +382.6 382560 1.2 ZNF133 DNMT3B ZNF2 RAD21 RFX5 SLC30A9 ZNF143 MIXL1 EGR2 ZNF654 UPF3AP1 CDRT4 LOC649873 MEIS3P1 GC17M016363 CENPV
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805474 261 600 HIC1 MAZ GLIS2 ZNF341 GLIS1 ZIC2 WT1 ZBTB26 ZNF18

Genomic Location for UPF3AP1 Gene

16,744,740 bp from pter
16,746,762 bp from pter
2,023 bases
Minus strand

Genomic View for UPF3AP1 Gene

Genes around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP1 Gene

Proteins for UPF3AP1 Gene

Post-translational modifications for UPF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP1 Gene

Domains & Families for UPF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP1 Gene

Function for UPF3AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP1 Gene

Localization for UPF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPF3AP1 Gene

Pathways & Interactions for UPF3AP1 Gene

SuperPathways for UPF3AP1 Gene

No Data Available

Interacting Proteins for UPF3AP1 Gene

Gene Ontology (GO) - Biological Process for UPF3AP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for UPF3AP1 Gene

Transcripts for UPF3AP1 Gene

mRNA/cDNA for UPF3AP1 Gene

(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP1 Gene

No ASD Table

Relevant External Links for UPF3AP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UPF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UPF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP1 Gene:

genes like me logo Genes that share expression patterns with UPF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UPF3AP1 Gene

Orthologs for UPF3AP1 Gene

Evolution for UPF3AP1 Gene

Gene Tree for UPF3AP1 (if available)
Gene Tree for UPF3AP1 (if available)

No data available for Orthologs for UPF3AP1 Gene

Paralogs for UPF3AP1 Gene

No data available for Paralogs for UPF3AP1 Gene

Variants for UPF3AP1 Gene

Relevant External Links for UPF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP1 Gene

Disorders for UPF3AP1 Gene

No disorders were found for UPF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP1 Gene

Publications for UPF3AP1 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64

Products for UPF3AP1 Gene

Sources for UPF3AP1 Gene

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