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Aliases for UPF3AP1 Gene

Subcategory (RNA class) for UPF3AP1 Gene

antisense

Aliases for UPF3AP1 Gene

  • UPF3A Pseudogene 1 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 1 2

External Ids for UPF3AP1 Gene

ORGUL Members for UPF3AP1 Gene

Previous GeneCards Identifiers for UPF3AP1 Gene

  • GC17M016649

Summaries for UPF3AP1 Gene

GeneCards Summary for UPF3AP1 Gene

UPF3AP1 (UPF3A Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP1 Gene

Genomics for UPF3AP1 Gene

Regulatory Elements for UPF3AP1 Gene

Enhancers for UPF3AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G017689 2 FANTOM5 Ensembl ENCODE dbSUPER 18.4 -948.6 -948629 12.1 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF286B ENSG00000264885 LOC100419436 UPF3AP1 SREBF1 FOXO3B FAM106A USP32P2 ENSG00000273018 DRG2
GH17G016406 1.9 FANTOM5 Ensembl ENCODE dbSUPER 18.8 +339.1 339052 2.2 HDGF ZFP64 SIN3A FEZF1 YBX1 ZNF207 ZNF548 SP3 JUNB REST ENSG00000266538 LOC649873 MPRIP-AS1 MEIS3P1 ENSG00000265519 UPF3AP1 FLCN LRRC75A-AS1 LRRC75A TRPV2
GH17G017035 1.3 Ensembl ENCODE dbSUPER 26.1 -289.8 -289752 1.9 CTCF HDGF ZNF473 ZNF266 MAX ZNF195 SALL2 ZIC2 ZNF366 POLR2A UPF3AP1 LOC100419436 MPRIP-AS1 SMCR5 ZNF624 MPRIP ENSG00000260328
GH17G017590 1.7 FANTOM5 ENCODE dbSUPER 14.3 -845.2 -845207 3.7 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 USP32P2 SMCR5 ENSG00000273018 UPF3AP1 PEMT MPRIP-AS1 LOC100419436 TOP3A RASD1 SREBF1
GH17G017027 1.5 Ensembl ENCODE dbSUPER 14.3 -283.2 -283239 5.9 HDGF PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 FOS KLF7 UPF3AP1 FLCN LOC100419436 MPRIP PLD6 ENSG00000260328
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091799 62 201 MAZ ZNF394 ZNF398 ZIC2 GLIS2 ZNF341 GLIS1 ZBTB26 WT1 ZNF18

Genomic Location for UPF3AP1 Gene

Chromosome:
17
Start:
16,744,740 bp from pter
End:
16,746,762 bp from pter
Size:
2,023 bases
Orientation:
Minus strand

Genomic View for UPF3AP1 Gene

Genes around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP1 Gene

Proteins for UPF3AP1 Gene

Post-translational modifications for UPF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP1 Gene

Domains & Families for UPF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP1 Gene

Function for UPF3AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP1 Gene

Localization for UPF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPF3AP1 Gene

Pathways & Interactions for UPF3AP1 Gene

SuperPathways for UPF3AP1 Gene

No Data Available

Interacting Proteins for UPF3AP1 Gene

Gene Ontology (GO) - Biological Process for UPF3AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPF3AP1 Gene

Transcripts for UPF3AP1 Gene

mRNA/cDNA for UPF3AP1 Gene

(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP1 Gene

No ASD Table

Relevant External Links for UPF3AP1 Gene

GeneLoc Exon Structure for
UPF3AP1
ECgene alternative splicing isoforms for
UPF3AP1

Expression for UPF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP1 Gene:

UPF3AP1
genes like me logo Genes that share expression patterns with UPF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP1 Gene

Orthologs for UPF3AP1 Gene

Evolution for UPF3AP1 Gene

ENSEMBL:
Gene Tree for UPF3AP1 (if available)
TreeFam:
Gene Tree for UPF3AP1 (if available)

No data available for Orthologs for UPF3AP1 Gene

Paralogs for UPF3AP1 Gene

No data available for Paralogs for UPF3AP1 Gene

Variants for UPF3AP1 Gene

Relevant External Links for UPF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPF3AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP1 Gene

Disorders for UPF3AP1 Gene

No disorders were found for UPF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP1 Gene

Publications for UPF3AP1 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64

Products for UPF3AP1 Gene

Sources for UPF3AP1 Gene

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