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Aliases for UPF3AP1 Gene

Subcategory (RNA class) for UPF3AP1 Gene

antisense

Aliases for UPF3AP1 Gene

  • UPF3A Pseudogene 1 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 1 2

External Ids for UPF3AP1 Gene

ORGUL Members for UPF3AP1 Gene

Previous GeneCards Identifiers for UPF3AP1 Gene

  • GC17M016649

Summaries for UPF3AP1 Gene

GeneCards Summary for UPF3AP1 Gene

UPF3AP1 (UPF3A Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP1 Gene

Genomics for UPF3AP1 Gene

Regulatory Elements for UPF3AP1 Gene

Enhancers for UPF3AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F017708 1.7 FANTOM5 Ensembl ENCODE 11.9 -965.3 -965338 7.0 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 SLC30A9 ZNF143 FOS SP3 ZNF286B ENSG00000264885 LOC100419436 RAI1 UPF3AP1 SREBF1 MIR33B MYO15A TOM1L2 TOP3A
GH17F017590 1.4 FANTOM5 ENCODE 14.3 -845.2 -845207 3.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC100419436 FAM106A SMCR8 LOC644422 DRG2 ACTG1P24 UPF3AP1 PEMT MPRIP-AS1 USP32P2
GH17F017027 1.3 Ensembl ENCODE 14.3 -283.2 -283239 5.9 HDGF ATF1 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 KLF7 FOS UPF3AP1 FLCN LOC100419436 MPRIP PLD6 ENSG00000260328
GH17F017415 1.7 FANTOM5 Ensembl ENCODE 10.4 -671.5 -671539 6.2 PKNOX1 MLX ARID4B DMAP1 YY1 ZNF143 FOS KLF13 ZNF263 SP3 DRG2 FLCN LLGL1 UPF3AP1 LOC100419436 SMCR5 LOC644909 RPL13P12
GH17F017689 1.8 FANTOM5 Ensembl ENCODE 9.8 -949.9 -949856 14.6 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ZNF286B SREBF1 ENSG00000264885 USP32P2 LOC100419436 DRG2 MIR33B FLCN SMCR5 UPF3AP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805474 261 600 HIC1 MAZ GLIS2 ZNF341 GLIS1 ZIC2 WT1 ZBTB26 ZNF18

Genomic Location for UPF3AP1 Gene

Chromosome:
17
Start:
16,744,740 bp from pter
End:
16,746,762 bp from pter
Size:
2,023 bases
Orientation:
Minus strand

Genomic View for UPF3AP1 Gene

Genes around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP1 Gene

Proteins for UPF3AP1 Gene

Post-translational modifications for UPF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP1 Gene

Domains & Families for UPF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP1 Gene

Function for UPF3AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP1 Gene

Localization for UPF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UPF3AP1 Gene

Pathways & Interactions for UPF3AP1 Gene

SuperPathways for UPF3AP1 Gene

No Data Available

Interacting Proteins for UPF3AP1 Gene

Gene Ontology (GO) - Biological Process for UPF3AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPF3AP1 Gene

Transcripts for UPF3AP1 Gene

mRNA/cDNA for UPF3AP1 Gene

(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP1 Gene

No ASD Table

Relevant External Links for UPF3AP1 Gene

GeneLoc Exon Structure for
UPF3AP1
ECgene alternative splicing isoforms for
UPF3AP1

Expression for UPF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UPF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP1 Gene:

UPF3AP1
genes like me logo Genes that share expression patterns with UPF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UPF3AP1 Gene

Orthologs for UPF3AP1 Gene

Evolution for UPF3AP1 Gene

ENSEMBL:
Gene Tree for UPF3AP1 (if available)
TreeFam:
Gene Tree for UPF3AP1 (if available)

No data available for Orthologs for UPF3AP1 Gene

Paralogs for UPF3AP1 Gene

No data available for Paralogs for UPF3AP1 Gene

Variants for UPF3AP1 Gene

Relevant External Links for UPF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPF3AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP1 Gene

Disorders for UPF3AP1 Gene

No disorders were found for UPF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP1 Gene

Publications for UPF3AP1 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64

Products for UPF3AP1 Gene

Sources for UPF3AP1 Gene

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