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Aliases for UPF3AP1 Gene

Subcategory (RNA class) for UPF3AP1 Gene


Aliases for UPF3AP1 Gene

  • UPF3A Pseudogene 1 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 1 2

External Ids for UPF3AP1 Gene

ORGUL Members for UPF3AP1 Gene

Previous GeneCards Identifiers for UPF3AP1 Gene

  • GC17M016649

Summaries for UPF3AP1 Gene

GeneCards Summary for UPF3AP1 Gene

UPF3AP1 (UPF3A Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for UPF3AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP1 Gene

Genomics for UPF3AP1 Gene

Regulatory Elements for UPF3AP1 Gene

Enhancers for UPF3AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H016406 1.9 FANTOM5 Ensembl ENCODE dbSUPER 18.8 +339.1 339052 2.2 HDGF ZNF493 ZFP64 SIN3A FEZF1 YBX1 ZNF121 GLIS2 ZNF207 KLF7 PIGL PPIAP53 NCOR1 ENSG00000266538 TVP23C MPRIP-AS1 LOC644422 ZNF286A ENSG00000264729 MEIS3P1
GH17H017708 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -965.2 -965198 6.7 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B SLC30A9 ZNF207 RAI1 ENSG00000264885 ZNF286B FOXO3B LOC100419436 UPF3AP1 DRG2 MPRIP-AS1 SREBF1 MIR33B
GH17H017689 2 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -948.6 -948629 12.1 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 DRC3 SREBF1 RAI1 ENSG00000264885 ZNF286B LOC100419436 DRG2 MIR33B FLCN MYO15A
GH17H016212 1.4 Ensembl ENCODE 13.4 +531.2 531235 5.9 MLX DMAP1 YY1 ZNF143 SP3 ZC3H11A ZFP41 MEF2D SSRP1 GLIS1 ZSWIM7 PIGL MPRIP-AS1 PPIAP53 UPF3AP1 ZNF286A TVP23C ENSG00000266538 LRRC75A-AS1 TEKT3
GH17H017415 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -670.5 -670459 3.6 FOXA2 MLX ARID4B DMAP1 YY1 ZNF766 ZNF143 FOS SP3 ZHX2 MPRIP-AS1 DRG2 FLII LOC644422 LOC100419436 UPF3AP1 FLCN LOC644909 RPL13P12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Promoters for UPF3AP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091799 62 201 MAZ ZNF398 ZIC2 GLIS2 GLIS1 ZNF341 ZBTB26 WT1 ZNF18

Genomic Locations for UPF3AP1 Gene

Genomic Locations for UPF3AP1 Gene
2,023 bases
Minus strand

Genomic View for UPF3AP1 Gene

Genes around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP1 Gene

Proteins for UPF3AP1 Gene

Post-translational modifications for UPF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP1 Gene

Domains & Families for UPF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP1 Gene

Function for UPF3AP1 Gene

Phenotypes From GWAS Catalog for UPF3AP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP1 Gene

Localization for UPF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPF3AP1 Gene

Pathways & Interactions for UPF3AP1 Gene

SuperPathways for UPF3AP1 Gene

No Data Available

Interacting Proteins for UPF3AP1 Gene

Gene Ontology (GO) - Biological Process for UPF3AP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for UPF3AP1 Gene

Drugs & Compounds for UPF3AP1 Gene

No Compound Related Data Available

Transcripts for UPF3AP1 Gene

mRNA/cDNA for UPF3AP1 Gene

(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP1 Gene

No ASD Table

Relevant External Links for UPF3AP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UPF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP1 Gene:

genes like me logo Genes that share expression patterns with UPF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP1 Gene

Orthologs for UPF3AP1 Gene

Evolution for UPF3AP1 Gene

Gene Tree for UPF3AP1 (if available)
Gene Tree for UPF3AP1 (if available)

No data available for Orthologs for UPF3AP1 Gene

Paralogs for UPF3AP1 Gene

No data available for Paralogs for UPF3AP1 Gene

Variants for UPF3AP1 Gene

Relevant External Links for UPF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP1 Gene

Disorders for UPF3AP1 Gene

No disorders were found for UPF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP1 Gene

Publications for UPF3AP1 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 2 3 60

Products for UPF3AP1 Gene

Sources for UPF3AP1 Gene

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