UNCX Gene
protein-coding GIFtS : 36
GCID: GC07 P001272
UNC homeobox
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Aliasesfor UNCX gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases UNC Homeobox 1 2 Homeobox Protein Uncx4.12 3 UNCX4.12 3 Uncx4.11 Homeobox Protein Unc-4 Homolog2 Unc4.1 Homeobox2
Export aliases for UNCX gene to outside databases Previous GC identifers: GC07P001241 GC07P001189
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Summariesfor UNCX gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: UNC4_HUMAN, A6NJT0 Function : Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance anddifferentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions (By similarity)
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Genomic Viewsfor UNCX gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UNCX gene promoter: SREBP-1c CUTL1 NF-kappaB SREBP-1b N-Myc SREBP-1a NF-kappaB2 STAT3 NF-kappaB1 MRF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for UNCX Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat UNCX
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p22.3 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22.3 UNCX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P001272: view genomic region
(about GC identifiers )
Start:
1,272,543 bp from pter
End:
1,276,954 bp from pter
Size:
4,412 bases
Orientation:
plus strand
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Proteinsfor UNCX gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: UNC4_HUMAN, A6NJT0 (See
protein sequence )Recommended Name: Homeobox protein unc-4 homolog Size : 531 amino acids; 53690 Da
Subcellular location : Nucleus (By similarity)
Secondary accessions : A4D221Explore the universe of human proteins at neXtProt for UNCX: NX_A6NJT0 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_A6NJT0 UNCX Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_001073930.1 ENSEMBL proteins: ENSP00000314480 Human Recombinant Protein Products for UNCX: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
UNCX for ontologies About GeneDecksing UNCX Antibody Products: Assay Products for UNCX:
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Protein
Domains / Familiesfor UNCX gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
UNCX for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry A6NJT0 ProtoNet protein and cluster: A6NJT0
UniProtKB/Swiss-Prot: UNC4_HUMAN, A6NJT0 Similarity : Belongs to the paired homeobox family. Unc-4 subfamilySimilarity : Contains 1 homeobox DNA-binding domain
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Functionfor UNCX gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: UNC4_HUMAN, A6NJT0 Function : Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance anddifferentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions (By similarity)
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
UNCX for ontologies About GeneDecksing Phenotypes: 6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Uncx) :
UNCX for phenotypes About GeneDecksing Animal Models: Mouse knock-out Uncx tm1Akis for UNCXClone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNCX (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNCXOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: UNCX (NM_001080461 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UNCX Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat UNCX
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Pathways & Interactionsfor UNCX gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for UNCX Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001502 cartilage condensation
IEA -- GO:0006351 transcription, DNA-dependent
IEA -- GO:0007389 pattern specification process
IEA -- GO:0021516 dorsal spinal cord development
IEA -- GO:0021889 olfactory bulb interneuron differentiation
IEA --
UNCX for ontologies About GeneDecksing
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Drugs & Compoundsfor UNCX gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for UNCX Search CenterWatch for drugs/clinical trials and news about UNCX / UNC4
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Transcriptsfor UNCX gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for UNCX gene: NM_001080461.1 Unigene Cluster for UNCX:
UNC homeobox Hs.232272 Unigene Representative Sequence: NM_001080461 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000316333 (uc011jvw.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNCX (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNCXOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: UNCX (NM_001080461 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UNCX Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat UNCX
1 DOTS entry : DT.99931508
GeneLoc Exon Structure
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Expression for UNCX gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section UNCX expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GACCCGGAGGAbout this image UNCX expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
10/20 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 20 ) Tissue Anatomical Compartment
Cell Category (developmental path) Somite Cervical Mesenchymal Sclerotome Cervical Sclerotome Cells Bone, Cartilage, Tendons & Ligaments Somite Cervical Somites Cervical Somite Cells Somite Somite Lumbar Mesenchymal Sclerotome Lumbar Sclerotome Cells Bone, Cartilage, Tendons & Ligaments Somite Lumbar Somites Lumbar Somite Cells Smooth Muscle, Somite Somite Sacral Somites Sacral Somite Cells Smooth Muscle, Somite Somite Somites Somite Cells Smooth Muscle, Somite Somite Thoracic Distal Rib Prechondrocytic Mesenchymal Cells Bone, Cartilage Somite Thoracic Mesenchymal Sclerotome Thoracic Sclerotome Cells Bone, Cartilage, Tendons & Ligaments Somite Thoracic Somites Thoracic Somite Cells Smooth Muscle, Somite Paraxial Mesoderm Paraxial Mesoderm Paraxial Mesoderm Cells Mesoderm Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell Name Category Sclerotome cells (Primary Cell)Bone, Cartilage, Somite
See UNCX Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.232272 SABiosciences Custom PCR Arrays for UNCX Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for UNCXBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat UNCX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UNCX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UNCX
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Orthologsfor UNCX gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for UNCX gene from 4/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for UNCX (if available)TreeFam Gene Tree for UNCX (if available)
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Paralogsfor UNCX gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for UNCX gene ENSG00000258518 2 SHOX 2 OTP 2 SHOX2 2 2 SIMAP similar genes for UNCX using alignment to 1 protein entry: UNC4_HUMAN :NKX6-1 RAX2
UNCX for paralogs About GeneDecksing
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Genomic Variantsfor UNCX gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for UNCX (1272543 - 1276954 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for UNCX 3 CNVs : 3660 4519 30248 1 Indel : 69752
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UNCX
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Disorders
/ Diseasesfor UNCX gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
UNCX for disorders About GeneDecksing 4 diseases for UNCX : About MalaCards double outlet right ventricle spina bifida pharyngitis neuronitis 2 diseases from the University of Copenhagen DISEASES database for UNCX :Ventricular septal defect Spina bifida Export disorders for UNCX gene to outside databases
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Publicationsfor UNCX gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for UNCX gene integrated from 9 sources : (articles sorted by number of sources associating them with UNCX) Utopia : connect your pdf to the dynamic world of online information
Human chromosome 7: DNA sequence and biology. (PubMed id 12690205) 1 , 2 Scherer S.W.... Tsui L.-C. (2003) The DNA sequence of human chromosome 7. (PubMed id 12853948) 1 , 2 Hillier L.W.... Wilson R.K. (2003) Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PubMed id 22797727) 1 Okada Y....Tanaka T. (2012) The sequence of the human genome. (PubMed id 11181995) 1 Venter J.C.... Zhu X. (2001)
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External Searches for UNCX gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UNCX gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing UNCX gene
(According to HUGE )
About This Section --
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Specialized Databases showing UNCX gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for UNCX Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for UNCX gene: Search GeneIP for patents involving UNCX GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor UNCX gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for UNCX OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for UNCX OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for UNCX OriGene Protein Over-expression Lysate for UNCX Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for UNCX Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNCX OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNCX Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for UNCX OriGene Custom Protein Services for UNCX OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat UNCX QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UNCX QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat UNCX QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat UNCX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UNCX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UNCX
Search Tocris compounds for UNCX
UNCX Proteins, Antibodies, CLIAs, and ELISAs
Search ThermoFisher Antibodies for UNCX
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat UNCX
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Aliases for UNCX
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Expression for UNCX
Function for UNCX
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