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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

UNC5CL Gene

protein-coding   GIFtS: 49
GCID: GC06M040994

unc-5 homolog C (C. elegans)-like

 Explore 4 diseases affiliated with
UNC5CL via our new
 Human Malady Compendium 
Biological research products
for UNC5CL
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Unc-5 Homolog C (C. Elegans)-Like1 2     MUXA2
ZUD1 2 3     UNC5C-Like Protein2
Protein Unc-5 Homolog C-Like2 3     ZU5 And Death Domain Containing2
MGC347631     ZU5 And Death Domain-Containing Protein3

External Ids:    HGNC: 212031   Entrez Gene: 2226432   Ensembl: ENSG000001246027   UniProtKB: Q8IV453   

Export aliases for UNC5CL gene to outside databases

Previous GC identifers: GC06M040996 GC06M041042 GC06M041043 GC06M041102 GC06M040712


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45
Function: Inhibits NF-kappa-B-dependent transcription by impairing NF-kappa-B binding to its targets




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_007592.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the UNC5CL gene promoter:
         HOXA9B   Bach2   AP-4   CUTL1   Roaz   GATA-1   NF-kappaB1   AP-2alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUNC5CL promoter sequence
   Search SABiosciences Chromatin IP Primers for UNC5CL

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UNC5CL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.1   Ensembl cytogenetic band:  6p21.1   HGNC cytogenetic band: 6p21.1

UNC5CL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
UNC5CL gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M040994:  view genomic region     (about GC identifiers)

Start:
40,994,640 bp from pter      End:
41,006,938 bp from pter
Size:
12,299 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 (See protein sequence)
Recommended Name: UNC5C-like protein  
Size: 518 amino acids; 57818 Da
Subunit: Interacts with p65/RELA and NFKB1
Subcellular location: Membrane; Single-pass type III membrane protein (Potential). Cytoplasm
Secondary accessions: Q5TGU1

Explore the universe of human proteins at neXtProt for UNC5CL: NX_Q8IV45

UNC5CL Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_775832.2  
ENSEMBL proteins: 
 ENSP00000362258   ENSP00000244565  

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Uscn Proteins for UNC5CL

Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IEA--
GO:0016021integral to membrane IEA--


UNC5CL for ontologies           About GeneDecksing



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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

UNC5CL for domains           About GeneDecksing

3 InterPro domains/families:
 IPR011029 DEATH-like_dom
 IPR000488 Death_domain
 IPR000906 ZU5

Graphical View of Domain Structure for InterPro Entry Q8IV45

ProtoNet protein and cluster: Q8IV45

1 Blocks protein family: IPB000488 Death domain

UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45
Similarity: Belongs to the unc-5 family
Similarity: Contains 1 death domain
Similarity: Contains 1 ZU5 domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

     UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45
Function: Inhibits NF-kappa-B-dependent transcription by impairing NF-kappa-B binding to its targets

miRNA
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2 QIAGEN miScript miRNA Assays for microRNAs that regulate UNC5CL:
hsa-miR-1539 hsa-miR-454*
SwitchGear 3'UTR luciferase reporter plasmidUNC5CL 3' UTR sequence
Inhib. RNA
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Netrin Signaling
Netrin Signaling1.00
2TNF-alpha/NF-kB Signaling Pathway
TNF-alpha/NF-kB Signaling Pathway1.00

1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for UNC5CL
    Netrin Signaling

1 BioSystems Pathway for UNC5CL 
    TNF-alpha/NF-kB Signaling Pathway


Interactions:

    SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UNC5CL

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for UNC5CL (Q8IV453 ENSP000002445654) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
NFKB1P198383, ENSP000002265744I2D: score=1 STRING: ENSP00000226574
RELAQ042063, ENSP000003842734I2D: score=1 STRING: ENSP00000384273
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007165signal transduction IEA--


UNC5CL for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for UNC5CL
Search CenterWatch for drugs/clinical trials and news about UNC5CL / UN5CL 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for UNC5CL gene: 
NM_173561.2  

Unigene Cluster for UNC5CL:

Unc-5 homolog C (C. elegans)-like
Hs.158357  [show with all ESTs]
Unigene Representative Sequence: JF681947
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000373164 ENST00000470102 ENST00000244565(uc003opi.3)

miRNA
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2 QIAGEN miScript miRNA Assays for microRNAs that regulate UNC5CL:
hsa-miR-1539 hsa-miR-454*
SwitchGear 3'UTR luciferase reporter plasmidUNC5CL 3' UTR sequence
Inhib. RNA
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Clone
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UNC5CL

Additional cDNA sequence: 

AY510109.1 BC035284.1 JF681947.1 

3 DOTS entries:

DT.405954  DT.97799912  DT.121305296 

24/34 AceView cDNA sequences (see all 34):

AI732663 BM023340 AY510109 AI283772 AW771149 AA593410 AI733001 BI963073 
BC035284 CR616692 AI791395 AA865842 NM_173561 CK821802 BG564282 AI915867 
AW341040 BI762014 AW300448 BX390655 BQ029052 BM311474 BX400199 CK821803 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

UNC5CL expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AATGGGCTGG

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)

About this image

UNC5CL expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
9 LifeMap In Vivo Development Anatomical Compartments/Cells 
Tissue Anatomical Compartment CellCategory (developmental path)
KidneyProximal TubuleProximal Tubule CellsKidney
BoneEndochondral Facial BonesBone
BoneStylopod Long BoneBone
BoneThoracic RibBone
BoneZeugopod Long BoneBone
CartilageMeckel's CartilageCartilage
KidneyEpithelial TubuleKidney
KidneyProximal TubuleKidney
Reproductive SystemMesonephrosReproductive System
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

See UNC5CL Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for UNC5CL

SOURCE GeneReport for Unigene cluster: Hs.158357

UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45
Tissue specificity: Expressed in pancreas, liver and kidney

    SABiosciences Custom PCR Arrays for UNC5CL
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UNC5CL

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for UNC5CL gene from 3/12 species (see all 12)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
zebrafish
(Danio rerio)
Actinopterygii si:ch211-80e15.16
si:ch211-80e15.1

1 ↔ 1
16(40288171-40353969)
honey bee
(Apis mellifera)
Insecta --
--

1 ↔ 1
Group10.40(32917-34456)
worm
(Caenorhabditis elegans)
Secernentea mig-216
Protein MIG-21
7(a)
1 ↔ 1
III(5877123-5878221)


ENSEMBL Gene Tree for UNC5CL (if available)
TreeFam Gene Tree for UNC5CL (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for UNC5CL gene
UNC5B2  BAI12  UNC5C2  UNC5A2  CFP2  BAI32  BAI22  UNC5D2  
1 SIMAP similar gene for UNC5CL using alignment to 1 protein entry:     UN5CL_HUMAN:
MUXA

UNC5CL for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/255 NCBI SNPs in UNC5CL are shown (see all 255    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1405709601,2
--40994281(+) CCTGAA/GCTAAG 1 -- ds50010--------
rs1821624701,2
--40994299(+) GGAAAA/TGTCCG 1 -- ds50010--------
rs101556631,2
C,F,A,--40994301(+) AAAAGT/GCCGGG 1 -- ds50018Minor allele frequency- G:0.28NA WA EA 368
rs1867015281,2
--40994319(+) TCTGGC/TGTGAC 1 -- ds50010--------
rs1434190001,2
--40994336(+) CACCCA/GATGGG 1 -- ds50010--------
rs1926241971,2
--40994472(+) CATGCA/GGGACC 1 -- ds50010--------
rs1455629081,2
--40994638(+) ATTTTA/CTCATT 1 -- ds50010--------
rs1855179491,2
--40994720(+) TGCCTA/GCCTTT 1 -- ut310--------
rs1888478321,2
--40994721(+) GCCTGA/CCTTTG 1 -- ut310--------
rs1928109321,2
--40994895(+) ATCCCC/TATCCT 1 -- ut310--------

HapMap Linkage Disequilibrium report for UNC5CL (40994640 - 41006938 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for UNC5CL: --
Human Gene Mutation Database (HGMD): UNC5CL

SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UNC5CL
DNA2.0 Custom Variant and Variant Library Synthesis for UNC5CL

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

UNC5CL for disorders           About GeneDecksing

4 diseases for UNC5CL:    About MalaCards
esophageal squamous cell carcinoma    squamous cell carcinoma    esophagitis    carcinoma


Export disorders for UNC5CL gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for UNC5CL gene integrated from 9 sources:
(articles sorted by number of sources associating them with UNC5CL)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of a ZU5 and death domain-containing inhibitor of NF- kappaB. (PubMed id 14769797)1, 2, 3, 9 Zhang J.... Shu H.-B. (2004)
  2. The death domain-containing protein Unc5CL is a novel MyD88-independent activator of the pro-inflammatory IRAK signaling cascade. (PubMed id 22158417)1 Heinz L.X....Tschopp J. (2012)
  3. Genome-wide association study identifies three new su sceptibility loci for esophageal squamous-cell carcinoma in Chinese populations . (PubMed id 21642993)1 Wu C....Lin D. (2011)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  5. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 222643 HGNC: 21203 AceView: UNC5CL Ensembl:ENSG00000124602 euGenes: HUgn222643
ECgene: UNC5CL H-InvDB: UNC5CL

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for UNC5CL Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for UNC5CL gene:
Search GeneIP for patents involving UNC5CL

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section

 
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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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