UNC5CL Gene
protein-coding GIFtS : 49
GCID: GC06 M040994
unc-5 homolog C (C. elegans)-like
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Aliasesfor UNC5CL gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Unc-5 Homolog C (C. Elegans)-Like 1 2 MUXA2 ZUD1 2 3 UNC5C-Like Protein2 Protein Unc-5 Homolog C-Like2 3 ZU5 And Death Domain Containing2 MGC347631 ZU5 And Death Domain-Containing Protein3
Export aliases for UNC5CL gene to outside databases Previous GC identifers: GC06M040996 GC06M041042 GC06M041043 GC06M041102 GC06M040712
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Summariesfor UNC5CL gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 Function : Inhibits NF-kappa-B-dependent transcription by impairing NF-kappa-B binding to its targets
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Genomic Viewsfor UNC5CL gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_007592.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UNC5CL gene promoter: HOXA9B Bach2 AP-4 CUTL1 Roaz GATA-1 NF-kappaB1 AP-2alpha Other transcription factors Search SABiosciences Chromatin IP Primers for UNC5CL Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UNC5CL
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1 UNC5CL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M040994: view genomic region
(about GC identifiers )
Start:
40,994,640 bp from pter
End:
41,006,938 bp from pter
Size:
12,299 bases
Orientation:
minus strand
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Proteinsfor UNC5CL gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 (See
protein sequence )Recommended Name: UNC5C-like protein Size : 518 amino acids; 57818 Da
Subunit : Interacts with p65/RELA and NFKB1
Subcellular location : Membrane; Single-pass type III membrane protein (Potential). Cytoplasm
Secondary accessions : Q5TGU1Explore the universe of human proteins at neXtProt for UNC5CL: NX_Q8IV45 UNC5CL Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_775832.2 ENSEMBL proteins: ENSP00000362258 ENSP00000244565 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA -- GO:0016021 integral to membrane
IEA --
UNC5CL for ontologies About GeneDecksing UNC5CL Antibody Products: Assay Products for UNC5CL:
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Protein
Domains / Familiesfor UNC5CL gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
UNC5CL for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IV45 ProtoNet protein and cluster: Q8IV45
1 Blocks protein family : IPB000488 Death domain UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 Similarity : Belongs to the unc-5 familySimilarity : Contains 1 death domainSimilarity : Contains 1 ZU5 domain
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Functionfor UNC5CL gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 Function : Inhibits NF-kappa-B-dependent transcription by impairing NF-kappa-B binding to its targets
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CL (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CLOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: UNC5CL (NM_173561 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UNC5CL Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UNC5CL
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UNC5CL
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Pathways & Interactionsfor UNC5CL gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Netrin Signaling 2 TNF-alpha/NF-kB Signaling Pathway
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for UNC5CL 1 BioSystems Pathway for UNC5CL Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UNC5CL STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for UNC5CL (Q8IV45 3 ENSP00000244565 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007165 signal transduction
IEA --
UNC5CL for ontologies About GeneDecksing
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Drugs & Compoundsfor UNC5CL gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for UNC5CL Search CenterWatch for drugs/clinical trials and news about UNC5CL / UN5CL
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Transcriptsfor UNC5CL gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for UNC5CL gene: NM_173561.2 Unigene Cluster for UNC5CL:
Unc-5 homolog C (C. elegans)-like Hs.158357 [show with all ESTs ] Unigene Representative Sequence: JF681947 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000373164 ENST00000470102 ENST00000244565 (uc003opi.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CL (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CLOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: UNC5CL (NM_173561 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UNC5CL Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UNC5CL
Additional cDNA sequence: AY510109.1 BC035284.1 JF681947.1
3 DOTS entries : DT.405954 DT.97799912
DT.121305296 24/34 AceView cDNA sequences (see all 34 ):
AI732663 BM023340 AY510109 AI283772 AW771149 AA593410 AI733001 BI963073 BC035284 CR616692 AI791395 AA865842 NM_173561 CK821802 BG564282 AI915867 AW341040 BI762014 AW300448 BX390655 BQ029052 BM311474 BX400199 CK821803 GeneLoc Exon Structure
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Expression for UNC5CL gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section UNC5CL expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AATGGGCTGG
About this image UNC5CL expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See UNC5CL Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for UNC5CL SOURCE GeneReport for Unigene cluster: Hs.158357 UniProtKB/Swiss-Prot: UN5CL_HUMAN, Q8IV45 Tissue specificity : Expressed in pancreas, liver and kidney SABiosciences Custom PCR Arrays for UNC5CL Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for UNC5CLBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat UNC5CL QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UNC5CL QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UNC5CL In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UNC5CL
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Orthologsfor UNC5CL gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for UNC5CL gene from 3/12 species (see all 12 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
zebrafish (Danio rerio)
Actinopterygii
si:ch211-80e15.16
si:ch211-80e15.1
1 ↔ 1
16(40288171-40353969)
honey bee (Apis mellifera)
Insecta
--
--
1 ↔ 1
Group10.40(32917-34456)
worm (Caenorhabditis elegans)
Secernentea
mig-216
Protein MIG-21
7(a)
1 ↔ 1
III(5877123-5878221)
ENSEMBL Gene Tree for UNC5CL (if available)TreeFam Gene Tree for UNC5CL (if available)
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Paralogsfor UNC5CL gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for UNC5CL gene UNC5B 2 BAI1 2 UNC5C 2 UNC5A 2 CFP 2 BAI3 2 BAI2 2 UNC5D 2 1 SIMAP similar gene for UNC5CL using alignment to 1 protein entry: UN5CL_HUMAN :MUXA
UNC5CL for paralogs About GeneDecksing
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Genomic Variantsfor UNC5CL gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for UNC5CL (40994640 - 41006938 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for UNC5CL: -- Human Gene Mutation Database (HGMD) : UNC5CL SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UNC5CL
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Disorders
/ Diseasesfor UNC5CL gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
UNC5CL for disorders About GeneDecksing 4 diseases for UNC5CL : About MalaCards esophageal squamous cell carcinoma squamous cell carcinoma esophagitis carcinoma Export disorders for UNC5CL gene to outside databases
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Publicationsfor UNC5CL gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for UNC5CL gene integrated from 9 sources : (articles sorted by number of sources associating them with UNC5CL) Utopia : connect your pdf to the dynamic world of online information
Identification of a ZU5 and death domain-containing inhibitor of NF- kappaB. (PubMed id 14769797) 1 , 2 , 3, 9 Zhang J.... Shu H.-B. (2004) The death domain-containing protein Unc5CL is a novel MyD88-independent activator of the pro-inflammatory IRAK signaling cascade. (PubMed id 22158417) 1 Heinz L.X....Tschopp J. (2012) Genome-wide association study identifies three new su sceptibility loci for esophageal squamous-cell carcinoma in Chinese populations . (PubMed id 21642993) 1 Wu C....Lin D. (2011) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 2 Mungall A.J.... Beck S. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for UNC5CL gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UNC5CL gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing UNC5CL gene
(According to HUGE )
About This Section --
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Specialized Databases showing UNC5CL gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for UNC5CL Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for UNC5CL gene: Search GeneIP for patents involving UNC5CL GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor UNC5CL gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for UNC5CL OriGene shRNA RFP for UNC5CL OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for UNC5CL OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for UNC5CL OriGene Protein Over-expression Lysate for UNC5CL Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for UNC5CL OriGene 3'-UTR Clone for UNC5CL OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CL OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UNC5CL Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for UNC5CL OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for UNC5CL OriGene Custom Protein Services for UNC5CL OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat UNC5CL QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UNC5CL QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UNC5CL QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat UNC5CL QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UNC5CL QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UNC5CL
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UNC5CL Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UNC5CL
ThermoFisher Antibodies for UNC5CL
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UNC5CL
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