Free for academic non-profit institutions. Other users need a Commercial license

Aliases for UNC50 Gene

Aliases for UNC50 Gene

  • Unc-50 Homolog (C. Elegans) 2 3
  • Periodontal Ligament-Specific Protein 22 3 4
  • Uncoordinated-Like Protein 3 4
  • Protein GMH1 Homolog 3 4
  • PDLs22 3 4
  • HGMH1 3 4
  • UNCL 3 4
  • Geal-6 Membrane-Associated High-Copy Suppressor 1 3
  • Protein Unc-50 Homolog 3
  • Unc-50 Related 3
  • HSD23 3
  • GMH1 3
  • URP 3

External Ids for UNC50 Gene

Summaries for UNC50 Gene

GeneCards Summary for UNC50 Gene

UNC50 (Unc-50 Homolog (C. Elegans)) is a Protein Coding gene. GO annotations related to this gene include RNA binding.

UniProtKB/Swiss-Prot for UNC50 Gene

  • May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UNC50 Gene

Genomics for UNC50 Gene

Genomic Location for UNC50 Gene

Start:
98,608,571 bp from pter
End:
98,618,515 bp from pter
Size:
9,945 bases
Orientation:
Plus strand

Genomic View for UNC50 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for UNC50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UNC50 Gene

Regulatory Elements for UNC50 Gene

Proteins for UNC50 Gene

  • Protein details for UNC50 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53HI1-UNC50_HUMAN
    Recommended name:
    Protein unc-50 homolog
    Protein Accession:
    Q53HI1
    Secondary Accessions:
    • D3DVH4
    • Q53S98
    • Q53TD6
    • Q5U5U2
    • Q6X7B9
    • Q9UQF4
    • Q9Y4S6

    Protein attributes for UNC50 Gene

    Size:
    259 amino acids
    Molecular mass:
    30373 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UNC50 Gene

Proteomics data for UNC50 Gene at MOPED

Post-translational modifications for UNC50 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UNC50 Gene

No data available for DME Specific Peptides for UNC50 Gene

Domains for UNC50 Gene

Protein Domains for UNC50 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

UNC50_HUMAN
Family:
  • Belongs to the unc-50 family.:
    • Q53HI1
genes like me logo Genes that share domains with UNC50: view

No data available for Gene Families for UNC50 Gene

Function for UNC50 Gene

Molecular function for UNC50 Gene

UniProtKB/Swiss-Prot Function: May be involved in cell surface expression of neuronal nicotinic receptors. Binds RNA (By similarity).

Gene Ontology (GO) - Molecular Function for UNC50 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with UNC50: view

miRNA for UNC50 Gene

miRTarBase miRNAs that target UNC50

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for UNC50 Gene

Localization for UNC50 Gene

Subcellular locations from UniProtKB/Swiss-Prot for UNC50 Gene

Nucleus inner membrane; Multi-pass membrane protein. Golgi apparatus membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for UNC50 Gene COMPARTMENTS Subcellular localization image for UNC50 gene
Compartment Confidence
golgi apparatus 5
nucleus 5
plasma membrane 3
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for UNC50 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane --
GO:0005637 nuclear inner membrane IEA --
GO:0005794 Golgi apparatus --
GO:0016021 integral component of membrane --
GO:0030173 integral component of Golgi membrane IBA --
genes like me logo Genes that share ontologies with UNC50: view

Pathways for UNC50 Gene

SuperPathways for UNC50 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UNC50 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IBA --
GO:0007166 cell surface receptor signaling pathway IEA --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with UNC50: view

No data available for Pathways by source for UNC50 Gene

Transcripts for UNC50 Gene

Unigene Clusters for UNC50 Gene

Unc-50 homolog (C. elegans):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UNC50 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1: - - - - -
SP2: - -
SP3: - - -
SP4: - -
SP5:
SP6:

Relevant External Links for UNC50 Gene

GeneLoc Exon Structure for
UNC50
ECgene alternative splicing isoforms for
UNC50

Expression for UNC50 Gene

mRNA expression in normal human tissues for UNC50 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for UNC50 Gene

SOURCE GeneReport for Unigene cluster for UNC50 Gene Hs.13370

mRNA Expression by UniProt/SwissProt for UNC50 Gene

Q53HI1-UNC50_HUMAN
Tissue specificity: Present in periodontal ligament fibroblasts (at protein level).
genes like me logo Genes that share expressions with UNC50: view

Orthologs for UNC50 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for UNC50 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UNC50 36
  • 99.87 (n)
  • 100 (a)
UNC50 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia UNC50 36
  • 89.32 (n)
  • 97.68 (a)
UNC50 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia UNC50 36
  • 92.28 (n)
  • 98.84 (a)
mouse
(Mus musculus)
Mammalia Unc50 36
  • 86.62 (n)
  • 95.75 (a)
Unc50 16
Unc50 37
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia UNC50 37
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia UNC50 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Unc50 36
  • 87.39 (n)
  • 96.14 (a)
chicken
(Gallus gallus)
Aves UNC50 36
  • 77.86 (n)
  • 86.1 (a)
UNC50 37
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia UNC50 37
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.32171 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.16401 36
unc50 36
  • 76.71 (n)
  • 83.78 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10827 36
zebrafish
(Danio rerio)
Actinopterygii unc50 36
  • 73.02 (n)
  • 80.16 (a)
unc50 37
  • 80 (a)
OneToOne
zgc56114 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002901 36
  • 58.96 (n)
  • 58.4 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG9773 36
  • 56.73 (n)
  • 54.9 (a)
CG9773 37
  • 50 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea unc-50 36
  • 53.78 (n)
  • 49 (a)
unc-50 37
  • 40 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR073C 36
  • 46.88 (n)
  • 38.81 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GMH1 36
  • 48.4 (n)
  • 38.8 (a)
GMH1 37
  • 35 (a)
OneToOne
GMH1 39
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F21230g 36
  • 47.18 (n)
  • 38.81 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G15240 36
  • 49.64 (n)
  • 39.91 (a)
rice
(Oryza sativa)
Liliopsida Os09g0109500 36
  • 49.72 (n)
  • 42.15 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes mug16 36
  • 52.78 (n)
  • 47.06 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.650 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5619 37
  • 53 (a)
OneToOne
Species with no ortholog for UNC50:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for UNC50 Gene

ENSEMBL:
Gene Tree for UNC50 (if available)
TreeFam:
Gene Tree for UNC50 (if available)

Paralogs for UNC50 Gene

No data available for Paralogs for UNC50 Gene

Variants for UNC50 Gene

Sequence variations from dbSNP and Humsavar for UNC50 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs14841 -- 98,618,383(-) TGATA(A/G)TTTAT utr-variant-3-prime
rs1044918 -- 98,618,138(+) ttttt(A/T)aaatC intron-variant
rs1516085 -- 98,615,849(-) TGAAG(C/T)CAGAA intron-variant
rs3769698 -- 98,617,431(-) AATTC(A/G)TTAGA intron-variant
rs3820941 -- 98,617,318(-) GAACC(A/G)GGGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UNC50 Gene

Variant ID Type Subtype PubMed ID
esv2585417 CNV Deletion 19546169

Relevant External Links for UNC50 Gene

HapMap Linkage Disequilibrium report
UNC50

Disorders for UNC50 Gene

No disorders were found for UNC50 Gene.

No data available for UniProtKB/Swiss-Prot for UNC50 Gene

Publications for UNC50 Gene

  1. UNCL, the mammalian homologue of UNC-50, is an inner nuclear membrane RNA-binding protein. (PMID: 10980252) Fitzgerald J. … Forsayeth J.R. (Brain Res. 2000) 2 3 4
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3 4
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  4. Expression of UNCL during development of periodontal tissue and response of periodontal ligament fibroblasts to mechanical stress in vivo and in vitro. (PMID: 17004066) Kim H.-J. … Park J.-C. (Cell Tissue Res. 2007) 3 4
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for UNC50 Gene

Sources for UNC50 Gene

Back to Top

Content