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Aliases for UMPS Gene

Aliases for UMPS Gene

  • Uridine Monophosphate Synthetase 2 3 5
  • UMP Synthase 3 4
  • Orotate Phosphoribosyl Transferase And Orotidine-5-Decarboxylase 2
  • Orotidine 5-Phosphate Decarboxylase 3
  • Orotate Phosphoribosyltransferase 3
  • Uridine 5-Monophosphate Synthase 3
  • OMPdecase 3
  • OPRTase 3
  • OPRT 3

External Ids for UMPS Gene

Previous GeneCards Identifiers for UMPS Gene

  • GC03P121158
  • GC03P124466
  • GC03P125731
  • GC03P125770
  • GC03P125931
  • GC03P121823
  • GC03P124449

Summaries for UMPS Gene

Entrez Gene Summary for UMPS Gene

  • This gene encodes a uridine 5'-monophosphate synthase. The encoded protein is a bifunctional enzyme that catalyzes the final two steps of the de novo pyrimidine biosynthetic pathway. The first reaction is carried out by the N-terminal enzyme orotate phosphoribosyltransferase which converts orotic acid to orotidine-5'-monophosphate. The terminal reaction is carried out by the C-terminal enzyme OMP decarboxylase which converts orotidine-5'-monophosphate to uridine monophosphate. Defects in this gene are the cause of hereditary orotic aciduria. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]

GeneCards Summary for UMPS Gene

UMPS (Uridine Monophosphate Synthetase) is a Protein Coding gene. Diseases associated with UMPS include Orotic Aciduria and Pyrimidine Metabolic Disorder. Among its related pathways are Pyrimidine metabolism and Porphyrin and chlorophyll metabolism. GO annotations related to this gene include transferase activity and orotidine-5-phosphate decarboxylase activity.

Gene Wiki entry for UMPS Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UMPS Gene

Genomics for UMPS Gene

Regulatory Elements for UMPS Gene

Enhancers for UMPS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G124769 1.5 Ensembl ENCODE dbSUPER 18.3 +42.6 42647 6.5 PKNOX1 ARNT SIN3A ZNF766 ZNF207 FOS ZNF263 MXD4 REST TBX21 UMPS ITGB5 GC03M124772 PIR43599
GH03G125050 1.7 FANTOM5 ENCODE dbSUPER 14.8 +324.1 324078 7.7 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 SLC30A9 ZNF766 UMPS SLC12A8 LOC101927056 HEG1 PIR63061
GH03G125010 1.4 ENCODE dbSUPER 11.9 +280.8 280751 2.1 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 UMPS ZNF148 SLC12A8 HEG1 PIR63061 MUC13
GH03G123960 1 ENCODE 13.9 -769.3 -769343 1.9 PKNOX1 ARNT ARID4B E2F7 SIN3A DMAP1 ZNF48 YY1 GTF3C2 GLIS2 ROPN1 UMPS SEC22A CCDC14 MYLK
GH03G124032 1.3 Ensembl ENCODE 10.3 -696.8 -696814 2.9 PKNOX1 FOXA2 MLX SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143 KALRN ROPN1 UMPS MIR5002
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UMPS on UCSC Golden Path with GeneCards custom track

Promoters for UMPS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157634 235 1600 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143

Genomic Location for UMPS Gene

Chromosome:
3
Start:
124,730,366 bp from pter
End:
124,749,273 bp from pter
Size:
18,908 bases
Orientation:
Plus strand

Genomic View for UMPS Gene

Genes around UMPS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UMPS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UMPS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UMPS Gene

Proteins for UMPS Gene

  • Protein details for UMPS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11172-UMPS_HUMAN
    Recommended name:
    Uridine 5-monophosphate synthase
    Protein Accession:
    P11172
    Secondary Accessions:
    • B5LY68
    • B5LY72
    • O00758
    • O00759
    • O00760
    • Q16862
    • Q9H3Q2
    • Q9UG49

    Protein attributes for UMPS Gene

    Size:
    480 amino acids
    Molecular mass:
    52222 Da
    Quaternary structure:
    • Homodimer.
    SequenceCaution:
    • Sequence=CAB45710.3; Type=Erroneous termination; Positions=430; Note=Translated as Gln.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for UMPS Gene

    Alternative splice isoforms for UMPS Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for UMPS Gene

Post-translational modifications for UMPS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for UMPS Gene

Domains & Families for UMPS Gene

Graphical View of Domain Structure for InterPro Entry

P11172

UniProtKB/Swiss-Prot:

UMPS_HUMAN :
  • In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
Family:
  • In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
  • In the C-terminal section; belongs to the OMP decarboxylase family.
genes like me logo Genes that share domains with UMPS: view

No data available for Gene Families for UMPS Gene

Function for UMPS Gene

Molecular function for UMPS Gene

GENATLAS Biochemistry:
uridine monophosphate synthase,pyrimidine de novo biosynthesis (see ODC,OPRT)
UniProtKB/Swiss-Prot CatalyticActivity:
Orotidine 5-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate.
UniProtKB/Swiss-Prot CatalyticActivity:
Orotidine 5-phosphate = UMP + CO(2).

Gene Ontology (GO) - Molecular Function for UMPS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004588 orotate phosphoribosyltransferase activity IEA,TAS --
GO:0004590 orotidine-5-phosphate decarboxylase activity TAS,IEA --
GO:0016740 transferase activity IEA --
GO:0016757 transferase activity, transferring glycosyl groups IEA --
GO:0016829 lyase activity IEA --
genes like me logo Genes that share ontologies with UMPS: view
genes like me logo Genes that share phenotypes with UMPS: view

Human Phenotype Ontology for UMPS Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for UMPS

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for UMPS Gene

Localization for UMPS Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UMPS gene
Compartment Confidence
nucleus 5
cytosol 5
mitochondrion 2
extracellular 1
cytoskeleton 1
peroxisome 1
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for UMPS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 15890648
GO:0005737 cytoplasm IDA 15890648
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with UMPS: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for UMPS Gene

Pathways & Interactions for UMPS Gene

genes like me logo Genes that share pathways with UMPS: view

UniProtKB/Swiss-Prot P11172-UMPS_HUMAN

  • Pathway: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.
  • Pathway: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.

Gene Ontology (GO) - Biological Process for UMPS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006207 de novo pyrimidine nucleobase biosynthetic process IEA --
GO:0006221 pyrimidine nucleotide biosynthetic process IEA --
GO:0006222 UMP biosynthetic process IDA 6893554
GO:0007565 female pregnancy IEA --
GO:0007595 lactation IEA --
genes like me logo Genes that share ontologies with UMPS: view

No data available for SIGNOR curated interactions for UMPS Gene

Drugs & Compounds for UMPS Gene

(13) Drugs for UMPS Gene - From: DrugBank, PharmGKB, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Fluorouracil Approved Pharma Enzyme, substrate RNA processing inhibitor and thymidylate synthase inhibitor 1856
Tegafur Approved Pharma 96
Capecitabine Approved, Investigational Pharma RNA processing inhibitor and thymidylate synthase inhibitor, F-pyrimidines 1342
leucovorin Approved Nutra 3235,1128
Carbon dioxide Approved, Vet_approved Pharma 0

(24) Additional Compounds for UMPS Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
5-Fluorouridine monophosphate
Orotidylic acid
  • 1,2,3,6-Tetrahydro-2,6-dioxo-3-(5-O-phosphono-b-D-ribofuranosyl)-4-Pyrimidinecarboxylate
  • 1,2,3,6-Tetrahydro-2,6-dioxo-3-(5-O-phosphono-b-D-ribofuranosyl)-4-Pyrimidinecarboxylic acid
  • 1,2,3,6-Tetrahydro-2,6-dioxo-3-(5-O-phosphono-beta-delta-ribofuranosyl)-4-Pyrimidinecarboxylate
  • 1,2,3,6-Tetrahydro-2,6-dioxo-3-(5-O-phosphono-beta-delta-ribofuranosyl)-4-Pyrimidinecarboxylic acid
  • 2,6-Dioxo-3-(5-O-phosphono-beta-D-ribofuranosyl)-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid
2149-82-8
Phosphoribosyl pyrophosphate
  • 5-Phospho-a-D-ribose-1-diphosphate
  • 5-Phospho-a-D-ribosyl pyrophosphate
  • 5-Phospho-alpha-D-ribose 1-diphosphate
  • 5-Phospho-alpha-D-ribose-1-diphosphate
  • 5-Phospho-alpha-D-ribosyl pyrophosphate
7540-64-9
thiosulfate
  • Hyposulfite
  • S-Hydril
  • Sodium hyposulfite
  • Sodium oxide sulfide (Na2S2O3)
  • Sodium thiosulfate
14383-50-7
genes like me logo Genes that share compounds with UMPS: view

Transcripts for UMPS Gene

Unigene Clusters for UMPS Gene

Uridine monophosphate synthetase:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for UMPS

Alternative Splicing Database (ASD) splice patterns (SP) for UMPS Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b
SP1: - - -
SP2: -
SP3:
SP4: -
SP5: - - -

Relevant External Links for UMPS Gene

GeneLoc Exon Structure for
UMPS
ECgene alternative splicing isoforms for
UMPS

Expression for UMPS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UMPS Gene

Protein differential expression in normal tissues from HIPED for UMPS Gene

This gene is overexpressed in Tonsil (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UMPS Gene



Protein tissue co-expression partners for UMPS Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of UMPS Gene:

UMPS

SOURCE GeneReport for Unigene cluster for UMPS Gene:

Hs.2057

Evidence on tissue expression from TISSUES for UMPS Gene

  • Nervous system(4.5)
  • Blood(4.4)
  • Liver(4.4)
  • Muscle(4.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for UMPS Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • immune
  • integumentary
  • lymphatic
  • nervous
  • respiratory
  • skeleton
  • urinary
Organs:
Head and neck:
  • brain
  • ear
  • eye
  • eyelid
  • face
  • head
  • nose
  • outer ear
  • skull
Thorax:
  • heart
Abdomen:
  • kidney
  • spleen
Pelvis:
  • pelvis
Limb:
  • digit
  • foot
  • hip
  • lower limb
  • nail
  • toe
General:
  • blood
  • blood vessel
  • bone marrow
  • red blood cell
  • skin
genes like me logo Genes that share expression patterns with UMPS: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for UMPS Gene

Orthologs for UMPS Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for UMPS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UMPS 34 35
  • 99.17 (n)
dog
(Canis familiaris)
Mammalia UMPS 34 35
  • 90.62 (n)
cow
(Bos Taurus)
Mammalia UMPS 34 35
  • 86.87 (n)
rat
(Rattus norvegicus)
Mammalia Umps 34
  • 84.51 (n)
mouse
(Mus musculus)
Mammalia Umps 34 16 35
  • 83.54 (n)
oppossum
(Monodelphis domestica)
Mammalia UMPS 35
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia UMPS 35
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves UMPS 34 35
  • 73.31 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 71 (a)
OneToMany
-- 35
  • 70 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia umps 34
  • 67.55 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.15949 34
zebrafish
(Danio rerio)
Actinopterygii umps 34 35
  • 62.85 (n)
zgc55723 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5453 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004175 34
  • 54.62 (n)
fruit fly
(Drosophila melanogaster)
Insecta r-l 36 34 35
  • 52.82 (n)
worm
(Caenorhabditis elegans)
Secernentea R12E2.11 36 35
  • 46 (a)
umps-1 35
  • 36 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes URA3 35 37
  • 49 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G54470 34
  • 57.46 (n)
soybean
(Glycine max)
eudicotyledons Gma.5031 34
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.6709 34
rice
(Oryza sativa)
Liliopsida Os01g0951200 34
  • 55.98 (n)
Os.4468 34
barley
(Hordeum vulgare)
Liliopsida Hv.9017 34
wheat
(Triticum aestivum)
Liliopsida Ta.27185 34
corn
(Zea mays)
Liliopsida Zm.6787 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9304 35
  • 52 (a)
OneToOne
Species where no ortholog for UMPS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for UMPS Gene

ENSEMBL:
Gene Tree for UMPS (if available)
TreeFam:
Gene Tree for UMPS (if available)

Paralogs for UMPS Gene

No data available for Paralogs for UMPS Gene

Variants for UMPS Gene

Sequence variations from dbSNP and Humsavar for UMPS Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs121917890 Pathogenic, Orotic aciduria 1 (ORAC1) [MIM:258900] 124,735,222(+) TTATT(A/G)GAAGG intron-variant, nc-transcript-variant, reference, missense
rs121917891 Pathogenic, Orotic aciduria 1 (ORAC1) [MIM:258900] 124,743,926(+) ATCTT(C/G)GCCAA nc-transcript-variant, reference, missense
rs121917892 Pathogenic, Orotic aciduria 1 (ORAC1) [MIM:258900] 124,737,583(+) TCTTG(G/T)AGAAG nc-transcript-variant, reference, missense
rs1801019 drug-response 124,737,895(+) TAATG(C/G)TTCTC nc-transcript-variant, reference, missense
rs111966656 Likely benign 124,747,816(+) TCTCC(C/T)AGCGA nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for UMPS Gene

Variant ID Type Subtype PubMed ID
nsv1001677 CNV loss 25217958
nsv1012242 CNV gain 25217958
nsv1160974 CNV duplication 26073780

Variation tolerance for UMPS Gene

Residual Variation Intolerance Score: 69.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.38; 71.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UMPS Gene

Human Gene Mutation Database (HGMD)
UMPS
SNPedia medical, phenotypic, and genealogical associations of SNPs for
UMPS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UMPS Gene

Disorders for UMPS Gene

MalaCards: The human disease database

(7) MalaCards diseases for UMPS Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
orotic aciduria
  • orotic aciduria type 1
pyrimidine metabolic disorder
  • pyrimidine metabolism disorder
colorectal cancer 5
  • colorectal cancer, susceptibility to, 5
adenine phosphoribosyltransferase deficiency
  • 2,8-dihydroxyadenine urolithiasis
dihydropyrimidine dehydrogenase deficiency
  • dihydropyrimidinuria
- elite association - COSMIC cancer census association via MalaCards
Search UMPS in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

UMPS_HUMAN
  • Orotic aciduria 1 (ORAC1) [MIM:258900]: A disorder of pyrimidine metabolism resulting in megaloblastic anemia and orotic acid crystalluria that is frequently associated with some degree of physical and mental retardation. A minority of cases have additional features, particularly congenital malformations and immune deficiencies. {ECO:0000269 PubMed:9042911}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Genatlas disease for UMPS Gene

orotic aciduria I (O5D & OPT deficiency)

Relevant External Links for UMPS

Genetic Association Database (GAD)
UMPS
Human Genome Epidemiology (HuGE) Navigator
UMPS
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UMPS
genes like me logo Genes that share disorders with UMPS: view

Publications for UMPS Gene

  1. Structures of the human orotidine-5'-monophosphate decarboxylase support a covalent mechanism and provide a framework for drug design. (PMID: 18184586) Wittmann J.G. … Rudolph M.G. (Structure 2008) 3 4 22 64
  2. The relationship between 5-fluorouracil sensitivity and single nucleotide polymorphisms of the orotate phosphoribosyl transferase gene in colorectal cancer. (PMID: 16328050) Kitajima M. … Ochiai T. (Oncol. Rep. 2006) 3 22 46 64
  3. Molecular cloning of the human UMP synthase gene and characterization of point mutations in two hereditary orotic aciduria families. (PMID: 9042911) Suchi M. … Wada Y. (Am. J. Hum. Genet. 1997) 3 4 22 64
  4. A Large-scale genetic association study of esophageal adenocarcinoma risk. (PMID: 20453000) Liu C.Y. … Christiani D.C. (Carcinogenesis 2010) 3 46 64
  5. Value of gene polymorphisms as markers of 5-FU therapy response in stage III colon carcinoma: a pilot study. (PMID: 20665215) FariA+a-Sarasqueta A. … van den Brule A.J. (Cancer Chemother. Pharmacol. 2010) 3 46 64

Products for UMPS Gene

  • Addgene plasmids for UMPS

Sources for UMPS Gene

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