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Aliases for UMODL1-AS1 Gene

Subcategory (RNA class) for UMODL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UMODL1-AS1 Gene

  • UMODL1 Antisense RNA 1 2 3 4 5
  • C21orf128 3 4
  • Chromosome 21 Open Reading Frame 128 2
  • UMODL1 Antisense Gene Protein 1 4

External Ids for UMODL1-AS1 Gene

Previous HGNC Symbols for UMODL1-AS1 Gene

  • C21orf128

Summaries for UMODL1-AS1 Gene

GeneCards Summary for UMODL1-AS1 Gene

UMODL1-AS1 (UMODL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UMODL1-AS1 Gene

Genomics for UMODL1-AS1 Gene

Regulatory Elements for UMODL1-AS1 Gene

Enhancers for UMODL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G042107 1 Ensembl ENCODE 60.3 +0.6 571 1.7 GTF2F1 CTCF RB1 SIN3A ZIC2 ZNF48 RAD21 ZNF143 SMC3 ZNF600 UMODL1-AS1 UMODL1
GH21G042096 1.7 FANTOM5 Ensembl ENCODE dbSUPER 31.7 +10.7 10731 2.5 PKNOX1 ARNT FEZF1 RFX5 ZNF366 SMARCC2 RCOR1 FOS SMARCC1 CEBPB UMODL1-AS1 ZBTB21 ZNF295-AS1 UMODL1 C2CD2 ABCG1
GH21G042113 1 Ensembl ENCODE 42 -5.8 -5801 1.0 SOX13 CTCF PKNOX1 SAP130 SUZ12 JUN SIN3A MAX CEBPG ZIC2 UMODL1-AS1 ABCG1
GH21G042101 0.6 ENCODE 43.9 +5.8 5782 3.3 MTA2 BHLHE40 NR2F1 TBX21 EP300 IKZF1 RELB IKZF2 UMODL1-AS1 UMODL1 ZBTB21 ZNF295-AS1 C2CD2
GH21G042093 0.9 ENCODE dbSUPER 29.2 +14.3 14260 1.5 TBP CTCF CBX3 RFX1 ZNF280D CEBPB E2F1 JUND MAFF KDM1A UMODL1-AS1 UMODL1 ZBTB21 ZNF295-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UMODL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UMODL1-AS1 Gene

Chromosome:
21
Start:
42,102,134 bp from pter
End:
42,108,534 bp from pter
Size:
6,401 bases
Orientation:
Minus strand

Genomic View for UMODL1-AS1 Gene

Genes around UMODL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UMODL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UMODL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UMODL1-AS1 Gene

Proteins for UMODL1-AS1 Gene

  • Protein details for UMODL1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N2C9-UMAS1_HUMAN
    Recommended name:
    Uncharacterized protein UMODL1-AS1
    Protein Accession:
    Q8N2C9

    Protein attributes for UMODL1-AS1 Gene

    Size:
    162 amino acids
    Molecular mass:
    18019 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UMODL1-AS1 Gene

Post-translational modifications for UMODL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UMODL1-AS1 Gene

Domains & Families for UMODL1-AS1 Gene

Protein Domains for UMODL1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with UMODL1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UMODL1-AS1 Gene

Function for UMODL1-AS1 Gene

Phenotypes for UMODL1-AS1 Gene

genes like me logo Genes that share phenotypes with UMODL1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UMODL1-AS1 Gene

Localization for UMODL1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UMODL1-AS1 gene
Compartment Confidence
nucleus 3
cytosol 3
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for UMODL1-AS1 Gene

Pathways & Interactions for UMODL1-AS1 Gene

SuperPathways for UMODL1-AS1 Gene

No Data Available

Interacting Proteins for UMODL1-AS1 Gene

Gene Ontology (GO) - Biological Process for UMODL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UMODL1-AS1 Gene

Drugs & Compounds for UMODL1-AS1 Gene

No Compound Related Data Available

Transcripts for UMODL1-AS1 Gene

mRNA/cDNA for UMODL1-AS1 Gene

(1) REFSEQ mRNAs :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UMODL1-AS1 Gene

No ASD Table

Relevant External Links for UMODL1-AS1 Gene

GeneLoc Exon Structure for
UMODL1-AS1
ECgene alternative splicing isoforms for
UMODL1-AS1

Expression for UMODL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UMODL1-AS1 Gene

genes like me logo Genes that share expression patterns with UMODL1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UMODL1-AS1 Gene

Orthologs for UMODL1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for UMODL1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C21orf128 35
  • 93 (a)
OneToOne
Species where no ortholog for UMODL1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for UMODL1-AS1 Gene

ENSEMBL:
Gene Tree for UMODL1-AS1 (if available)
TreeFam:
Gene Tree for UMODL1-AS1 (if available)

Paralogs for UMODL1-AS1 Gene

No data available for Paralogs for UMODL1-AS1 Gene

Variants for UMODL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for UMODL1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000397050 -- 42,106,525(+) AGGTT(A/G)TCGTG intron-variant
rs1000555442 -- 42,104,745(+) GCGCC(C/T)GGCCT intron-variant
rs1000639937 -- 42,107,290(+) CCACC(A/G)GCATC intron-variant
rs1000793756 -- 42,102,442(+) TAGTC(A/G)AAAGC intron-variant, nc-transcript-variant
rs1001135631 -- 42,107,470(+) GGGCC(A/G)TGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UMODL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1062246 CNV loss 25217958
nsv587624 CNV loss 21841781

Variation tolerance for UMODL1-AS1 Gene

Gene Damage Index Score: 3.73; 57.67% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UMODL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UMODL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UMODL1-AS1 Gene

Disorders for UMODL1-AS1 Gene

Relevant External Links for UMODL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UMODL1-AS1

No disorders were found for UMODL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UMODL1-AS1 Gene

Publications for UMODL1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for UMODL1-AS1 Gene

Sources for UMODL1-AS1 Gene

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